Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS05095 and HMPREF1058_RS05090 are separated by 18 nucleotides HMPREF1058_RS05090 and HMPREF1058_RS05085 are separated by 11 nucleotides HMPREF1058_RS05085 and HMPREF1058_RS05080 are separated by 7 nucleotides
HMPREF1058_RS05095: HMPREF1058_RS05095 - hypothetical protein, at 247,341 to 248,552
_RS05095
HMPREF1058_RS05090: HMPREF1058_RS05090 - WG repeat-containing protein, at 248,571 to 250,418
_RS05090
HMPREF1058_RS05085: HMPREF1058_RS05085 - hypothetical protein, at 250,430 to 251,365
_RS05085
HMPREF1058_RS05080: HMPREF1058_RS05080 - hypothetical protein, at 251,373 to 252,323
_RS05080
Position (kb) 248
249
250
251 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 247.588 kb on + strand, within HMPREF1058_RS05095 at 247.589 kb on - strand, within HMPREF1058_RS05095 at 247.663 kb on - strand, within HMPREF1058_RS05095 at 247.665 kb on - strand, within HMPREF1058_RS05095 at 247.725 kb on - strand, within HMPREF1058_RS05095 at 247.746 kb on - strand, within HMPREF1058_RS05095 at 247.757 kb on + strand, within HMPREF1058_RS05095 at 247.758 kb on - strand, within HMPREF1058_RS05095 at 247.774 kb on + strand, within HMPREF1058_RS05095 at 247.794 kb on - strand, within HMPREF1058_RS05095 at 247.843 kb on + strand, within HMPREF1058_RS05095 at 247.847 kb on - strand, within HMPREF1058_RS05095 at 247.900 kb on + strand, within HMPREF1058_RS05095 at 247.901 kb on - strand, within HMPREF1058_RS05095 at 247.901 kb on - strand, within HMPREF1058_RS05095 at 247.901 kb on - strand, within HMPREF1058_RS05095 at 247.905 kb on - strand, within HMPREF1058_RS05095 at 247.905 kb on - strand, within HMPREF1058_RS05095 at 247.905 kb on - strand, within HMPREF1058_RS05095 at 247.911 kb on - strand, within HMPREF1058_RS05095 at 247.928 kb on + strand, within HMPREF1058_RS05095 at 247.930 kb on + strand, within HMPREF1058_RS05095 at 247.943 kb on + strand, within HMPREF1058_RS05095 at 247.973 kb on - strand, within HMPREF1058_RS05095 at 247.973 kb on - strand, within HMPREF1058_RS05095 at 247.990 kb on + strand, within HMPREF1058_RS05095 at 248.230 kb on + strand, within HMPREF1058_RS05095 at 248.254 kb on - strand, within HMPREF1058_RS05095 at 248.270 kb on + strand, within HMPREF1058_RS05095 at 248.335 kb on + strand, within HMPREF1058_RS05095 at 248.352 kb on + strand, within HMPREF1058_RS05095 at 248.353 kb on - strand, within HMPREF1058_RS05095 at 248.450 kb on + strand at 248.536 kb on - strand at 248.536 kb on - strand at 248.573 kb on - strand at 248.607 kb on + strand at 248.618 kb on + strand at 248.618 kb on + strand at 248.618 kb on + strand at 248.696 kb on + strand at 248.696 kb on + strand at 248.696 kb on + strand at 248.697 kb on - strand at 248.697 kb on - strand at 248.699 kb on - strand at 248.751 kb on + strand at 248.875 kb on + strand, within HMPREF1058_RS05090 at 248.926 kb on - strand, within HMPREF1058_RS05090 at 249.046 kb on + strand, within HMPREF1058_RS05090 at 249.047 kb on - strand, within HMPREF1058_RS05090 at 249.146 kb on + strand, within HMPREF1058_RS05090 at 249.146 kb on + strand, within HMPREF1058_RS05090 at 249.147 kb on - strand, within HMPREF1058_RS05090 at 249.148 kb on + strand, within HMPREF1058_RS05090 at 249.231 kb on - strand, within HMPREF1058_RS05090 at 249.278 kb on + strand, within HMPREF1058_RS05090 at 249.278 kb on + strand, within HMPREF1058_RS05090 at 249.282 kb on + strand, within HMPREF1058_RS05090 at 249.289 kb on + strand, within HMPREF1058_RS05090 at 249.397 kb on + strand, within HMPREF1058_RS05090 at 249.397 kb on + strand, within HMPREF1058_RS05090 at 249.404 kb on + strand, within HMPREF1058_RS05090 at 249.408 kb on + strand, within HMPREF1058_RS05090 at 249.443 kb on + strand, within HMPREF1058_RS05090 at 249.489 kb on - strand, within HMPREF1058_RS05090 at 249.492 kb on - strand, within HMPREF1058_RS05090 at 249.492 kb on - strand, within HMPREF1058_RS05090 at 249.494 kb on + strand, within HMPREF1058_RS05090 at 249.510 kb on + strand, within HMPREF1058_RS05090 at 249.510 kb on + strand, within HMPREF1058_RS05090 at 249.542 kb on - strand, within HMPREF1058_RS05090 at 249.613 kb on - strand, within HMPREF1058_RS05090 at 249.659 kb on - strand, within HMPREF1058_RS05090 at 249.731 kb on - strand, within HMPREF1058_RS05090 at 249.876 kb on - strand, within HMPREF1058_RS05090 at 249.937 kb on + strand, within HMPREF1058_RS05090 at 249.938 kb on - strand, within HMPREF1058_RS05090 at 249.938 kb on - strand, within HMPREF1058_RS05090 at 250.034 kb on + strand, within HMPREF1058_RS05090 at 250.034 kb on + strand, within HMPREF1058_RS05090 at 250.142 kb on - strand, within HMPREF1058_RS05090 at 250.142 kb on - strand, within HMPREF1058_RS05090 at 250.145 kb on + strand, within HMPREF1058_RS05090 at 250.147 kb on + strand, within HMPREF1058_RS05090 at 250.238 kb on + strand at 250.260 kb on + strand at 250.368 kb on + strand at 250.374 kb on + strand at 250.431 kb on + strand at 250.450 kb on + strand at 250.451 kb on - strand at 250.451 kb on - strand at 250.453 kb on + strand at 250.453 kb on + strand at 250.453 kb on + strand at 250.490 kb on + strand at 250.491 kb on - strand at 250.540 kb on + strand, within HMPREF1058_RS05085 at 250.735 kb on + strand, within HMPREF1058_RS05085 at 250.736 kb on - strand, within HMPREF1058_RS05085 at 250.737 kb on + strand, within HMPREF1058_RS05085 at 250.753 kb on + strand, within HMPREF1058_RS05085 at 250.758 kb on + strand, within HMPREF1058_RS05085 at 250.759 kb on - strand, within HMPREF1058_RS05085 at 250.777 kb on + strand, within HMPREF1058_RS05085 at 250.817 kb on - strand, within HMPREF1058_RS05085 at 250.822 kb on - strand, within HMPREF1058_RS05085 at 250.822 kb on - strand, within HMPREF1058_RS05085 at 250.824 kb on + strand, within HMPREF1058_RS05085 at 250.824 kb on + strand, within HMPREF1058_RS05085 at 250.840 kb on - strand, within HMPREF1058_RS05085 at 250.840 kb on - strand, within HMPREF1058_RS05085 at 250.877 kb on + strand, within HMPREF1058_RS05085 at 250.887 kb on + strand, within HMPREF1058_RS05085 at 250.892 kb on - strand, within HMPREF1058_RS05085 at 250.899 kb on + strand, within HMPREF1058_RS05085 at 250.943 kb on + strand, within HMPREF1058_RS05085 at 250.985 kb on - strand, within HMPREF1058_RS05085 at 250.987 kb on - strand, within HMPREF1058_RS05085 at 251.002 kb on + strand, within HMPREF1058_RS05085 at 251.009 kb on + strand, within HMPREF1058_RS05085 at 251.009 kb on + strand, within HMPREF1058_RS05085 at 251.035 kb on + strand, within HMPREF1058_RS05085 at 251.066 kb on + strand, within HMPREF1058_RS05085 at 251.070 kb on + strand, within HMPREF1058_RS05085 at 251.070 kb on + strand, within HMPREF1058_RS05085 at 251.098 kb on + strand, within HMPREF1058_RS05085 at 251.128 kb on + strand, within HMPREF1058_RS05085 at 251.237 kb on + strand, within HMPREF1058_RS05085 at 251.237 kb on + strand, within HMPREF1058_RS05085 at 251.272 kb on + strand at 251.272 kb on + strand at 251.272 kb on + strand at 251.272 kb on + strand at 251.273 kb on - strand at 251.277 kb on - strand at 251.282 kb on - strand at 251.346 kb on - strand at 251.346 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day7 remove 247,588 + HMPREF1058_RS05095 0.20 +0.8 247,589 - HMPREF1058_RS05095 0.20 -0.1 247,663 - HMPREF1058_RS05095 0.27 +0.6 247,665 - HMPREF1058_RS05095 0.27 +0.1 247,725 - HMPREF1058_RS05095 0.32 -1.1 247,746 - HMPREF1058_RS05095 0.33 -1.0 247,757 + HMPREF1058_RS05095 0.34 -1.1 247,758 - HMPREF1058_RS05095 0.34 -0.1 247,774 + HMPREF1058_RS05095 0.36 +1.8 247,794 - HMPREF1058_RS05095 0.37 +2.1 247,843 + HMPREF1058_RS05095 0.41 -0.2 247,847 - HMPREF1058_RS05095 0.42 -2.1 247,900 + HMPREF1058_RS05095 0.46 -0.6 247,901 - HMPREF1058_RS05095 0.46 -1.2 247,901 - HMPREF1058_RS05095 0.46 -1.8 247,901 - HMPREF1058_RS05095 0.46 -1.8 247,905 - HMPREF1058_RS05095 0.47 -1.6 247,905 - HMPREF1058_RS05095 0.47 +0.6 247,905 - HMPREF1058_RS05095 0.47 +0.7 247,911 - HMPREF1058_RS05095 0.47 -2.6 247,928 + HMPREF1058_RS05095 0.48 -2.4 247,930 + HMPREF1058_RS05095 0.49 -0.9 247,943 + HMPREF1058_RS05095 0.50 +1.5 247,973 - HMPREF1058_RS05095 0.52 -3.5 247,973 - HMPREF1058_RS05095 0.52 -1.1 247,990 + HMPREF1058_RS05095 0.54 -2.7 248,230 + HMPREF1058_RS05095 0.73 +1.0 248,254 - HMPREF1058_RS05095 0.75 -0.6 248,270 + HMPREF1058_RS05095 0.77 -0.3 248,335 + HMPREF1058_RS05095 0.82 -1.3 248,352 + HMPREF1058_RS05095 0.83 -1.4 248,353 - HMPREF1058_RS05095 0.83 +0.4 248,450 + -0.4 248,536 - +0.2 248,536 - -0.6 248,573 - +0.5 248,607 + -1.9 248,618 + +0.2 248,618 + -0.6 248,618 + -0.3 248,696 + +2.0 248,696 + +0.2 248,696 + +0.1 248,697 - -0.6 248,697 - -1.6 248,699 - -0.5 248,751 + +0.4 248,875 + HMPREF1058_RS05090 0.16 -1.5 248,926 - HMPREF1058_RS05090 0.19 -2.2 249,046 + HMPREF1058_RS05090 0.26 +0.7 249,047 - HMPREF1058_RS05090 0.26 -1.9 249,146 + HMPREF1058_RS05090 0.31 +1.1 249,146 + HMPREF1058_RS05090 0.31 +1.5 249,147 - HMPREF1058_RS05090 0.31 -0.6 249,148 + HMPREF1058_RS05090 0.31 +1.4 249,231 - HMPREF1058_RS05090 0.36 +0.1 249,278 + HMPREF1058_RS05090 0.38 +0.2 249,278 + HMPREF1058_RS05090 0.38 -2.4 249,282 + HMPREF1058_RS05090 0.38 -1.0 249,289 + HMPREF1058_RS05090 0.39 -2.2 249,397 + HMPREF1058_RS05090 0.45 +1.4 249,397 + HMPREF1058_RS05090 0.45 +1.7 249,404 + HMPREF1058_RS05090 0.45 -1.1 249,408 + HMPREF1058_RS05090 0.45 +0.5 249,443 + HMPREF1058_RS05090 0.47 -0.2 249,489 - HMPREF1058_RS05090 0.50 +1.2 249,492 - HMPREF1058_RS05090 0.50 -1.9 249,492 - HMPREF1058_RS05090 0.50 -0.2 249,494 + HMPREF1058_RS05090 0.50 -0.8 249,510 + HMPREF1058_RS05090 0.51 +0.2 249,510 + HMPREF1058_RS05090 0.51 -0.0 249,542 - HMPREF1058_RS05090 0.53 -0.8 249,613 - HMPREF1058_RS05090 0.56 +1.3 249,659 - HMPREF1058_RS05090 0.59 +0.7 249,731 - HMPREF1058_RS05090 0.63 -2.6 249,876 - HMPREF1058_RS05090 0.71 -1.3 249,937 + HMPREF1058_RS05090 0.74 -3.7 249,938 - HMPREF1058_RS05090 0.74 -0.2 249,938 - HMPREF1058_RS05090 0.74 -0.4 250,034 + HMPREF1058_RS05090 0.79 +0.4 250,034 + HMPREF1058_RS05090 0.79 +0.3 250,142 - HMPREF1058_RS05090 0.85 -0.1 250,142 - HMPREF1058_RS05090 0.85 +0.2 250,145 + HMPREF1058_RS05090 0.85 -0.7 250,147 + HMPREF1058_RS05090 0.85 +0.1 250,238 + -0.3 250,260 + +0.4 250,368 + -3.1 250,374 + +0.3 250,431 + +0.8 250,450 + -1.2 250,451 - -2.1 250,451 - -1.0 250,453 + +0.4 250,453 + -1.3 250,453 + -0.1 250,490 + +0.3 250,491 - -0.8 250,540 + HMPREF1058_RS05085 0.12 -2.4 250,735 + HMPREF1058_RS05085 0.33 +1.6 250,736 - HMPREF1058_RS05085 0.33 +0.8 250,737 + HMPREF1058_RS05085 0.33 +0.1 250,753 + HMPREF1058_RS05085 0.35 -1.1 250,758 + HMPREF1058_RS05085 0.35 +1.2 250,759 - HMPREF1058_RS05085 0.35 +1.2 250,777 + HMPREF1058_RS05085 0.37 +0.1 250,817 - HMPREF1058_RS05085 0.41 -0.8 250,822 - HMPREF1058_RS05085 0.42 -2.5 250,822 - HMPREF1058_RS05085 0.42 -2.6 250,824 + HMPREF1058_RS05085 0.42 +0.3 250,824 + HMPREF1058_RS05085 0.42 -1.6 250,840 - HMPREF1058_RS05085 0.44 -2.8 250,840 - HMPREF1058_RS05085 0.44 -0.6 250,877 + HMPREF1058_RS05085 0.48 -0.3 250,887 + HMPREF1058_RS05085 0.49 -0.8 250,892 - HMPREF1058_RS05085 0.49 +1.2 250,899 + HMPREF1058_RS05085 0.50 -1.8 250,943 + HMPREF1058_RS05085 0.55 +0.6 250,985 - HMPREF1058_RS05085 0.59 +1.2 250,987 - HMPREF1058_RS05085 0.60 +0.3 251,002 + HMPREF1058_RS05085 0.61 -1.1 251,009 + HMPREF1058_RS05085 0.62 -2.0 251,009 + HMPREF1058_RS05085 0.62 +0.6 251,035 + HMPREF1058_RS05085 0.65 +1.3 251,066 + HMPREF1058_RS05085 0.68 -0.8 251,070 + HMPREF1058_RS05085 0.68 -2.0 251,070 + HMPREF1058_RS05085 0.68 +0.9 251,098 + HMPREF1058_RS05085 0.71 -0.8 251,128 + HMPREF1058_RS05085 0.75 -0.3 251,237 + HMPREF1058_RS05085 0.86 -0.3 251,237 + HMPREF1058_RS05085 0.86 -0.8 251,272 + -0.9 251,272 + +1.8 251,272 + -1.2 251,272 + +0.6 251,273 - -0.2 251,277 - -1.1 251,282 - -0.8 251,346 - -0.0 251,346 - -0.8
Or see this region's nucleotide sequence