Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse16; day7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS05020 and HMPREF1058_RS05015 are separated by 6 nucleotides HMPREF1058_RS05015 and HMPREF1058_RS05010 are separated by 147 nucleotides HMPREF1058_RS05010 and HMPREF1058_RS05005 are separated by 133 nucleotides HMPREF1058_RS05005 and HMPREF1058_RS05000 are separated by 77 nucleotides
HMPREF1058_RS05020: HMPREF1058_RS05020 - twin-arginine translocase subunit TatC, at 267,370 to 268,200
_RS05020
HMPREF1058_RS05015: HMPREF1058_RS05015 - twin-arginine translocase TatA/TatE family subunit, at 268,207 to 268,410
_RS05015
HMPREF1058_RS05010: HMPREF1058_RS05010 - hypothetical protein, at 268,558 to 269,067
_RS05010
HMPREF1058_RS05005: HMPREF1058_RS05005 - hypothetical protein, at 269,201 to 269,683
_RS05005
HMPREF1058_RS05000: HMPREF1058_RS05000 - DUF4010 domain-containing protein, at 269,761 to 271,050
_RS05000
Position (kb) 268
269
270 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 267.579 kb on + strand, within HMPREF1058_RS05020 at 267.664 kb on - strand, within HMPREF1058_RS05020 at 267.672 kb on - strand, within HMPREF1058_RS05020 at 267.684 kb on + strand, within HMPREF1058_RS05020 at 267.738 kb on + strand, within HMPREF1058_RS05020 at 267.738 kb on + strand, within HMPREF1058_RS05020 at 267.739 kb on - strand, within HMPREF1058_RS05020 at 267.802 kb on + strand, within HMPREF1058_RS05020 at 267.838 kb on + strand, within HMPREF1058_RS05020 at 267.869 kb on + strand, within HMPREF1058_RS05020 at 267.997 kb on - strand, within HMPREF1058_RS05020 at 268.180 kb on + strand at 268.181 kb on - strand at 268.230 kb on + strand at 268.243 kb on + strand, within HMPREF1058_RS05015 at 268.243 kb on + strand, within HMPREF1058_RS05015 at 268.244 kb on - strand, within HMPREF1058_RS05015 at 268.367 kb on - strand, within HMPREF1058_RS05015 at 268.421 kb on - strand at 268.421 kb on - strand at 268.679 kb on - strand, within HMPREF1058_RS05010 at 268.734 kb on + strand, within HMPREF1058_RS05010 at 268.758 kb on + strand, within HMPREF1058_RS05010 at 268.759 kb on - strand, within HMPREF1058_RS05010 at 268.760 kb on + strand, within HMPREF1058_RS05010 at 268.792 kb on + strand, within HMPREF1058_RS05010 at 268.793 kb on - strand, within HMPREF1058_RS05010 at 268.800 kb on + strand, within HMPREF1058_RS05010 at 268.801 kb on - strand, within HMPREF1058_RS05010 at 268.811 kb on - strand, within HMPREF1058_RS05010 at 268.842 kb on + strand, within HMPREF1058_RS05010 at 268.892 kb on + strand, within HMPREF1058_RS05010 at 268.896 kb on + strand, within HMPREF1058_RS05010 at 268.897 kb on - strand, within HMPREF1058_RS05010 at 268.897 kb on - strand, within HMPREF1058_RS05010 at 268.899 kb on - strand, within HMPREF1058_RS05010 at 268.906 kb on + strand, within HMPREF1058_RS05010 at 268.910 kb on - strand at 268.935 kb on + strand, within HMPREF1058_RS05010 at 268.935 kb on + strand, within HMPREF1058_RS05010 at 268.987 kb on - strand, within HMPREF1058_RS05010 at 269.072 kb on - strand at 269.072 kb on - strand at 269.072 kb on - strand at 269.086 kb on + strand at 269.087 kb on - strand at 269.087 kb on - strand at 269.099 kb on + strand at 269.112 kb on + strand at 269.169 kb on + strand at 269.294 kb on + strand, within HMPREF1058_RS05005 at 269.513 kb on - strand, within HMPREF1058_RS05005 at 269.517 kb on + strand, within HMPREF1058_RS05005 at 269.517 kb on + strand, within HMPREF1058_RS05005 at 269.555 kb on - strand, within HMPREF1058_RS05005 at 269.745 kb on + strand at 269.799 kb on + strand at 269.908 kb on - strand, within HMPREF1058_RS05000 at 269.940 kb on + strand, within HMPREF1058_RS05000 at 269.942 kb on + strand, within HMPREF1058_RS05000 at 269.943 kb on - strand, within HMPREF1058_RS05000 at 269.943 kb on - strand, within HMPREF1058_RS05000 at 269.953 kb on - strand, within HMPREF1058_RS05000 at 269.967 kb on - strand, within HMPREF1058_RS05000 at 269.994 kb on + strand, within HMPREF1058_RS05000 at 270.013 kb on + strand, within HMPREF1058_RS05000 at 270.014 kb on - strand, within HMPREF1058_RS05000 at 270.016 kb on + strand, within HMPREF1058_RS05000
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse16; day7 remove 267,579 + HMPREF1058_RS05020 0.25 +1.6 267,664 - HMPREF1058_RS05020 0.35 -0.1 267,672 - HMPREF1058_RS05020 0.36 -1.4 267,684 + HMPREF1058_RS05020 0.38 +1.6 267,738 + HMPREF1058_RS05020 0.44 -0.5 267,738 + HMPREF1058_RS05020 0.44 +0.1 267,739 - HMPREF1058_RS05020 0.44 -2.1 267,802 + HMPREF1058_RS05020 0.52 +0.8 267,838 + HMPREF1058_RS05020 0.56 -1.7 267,869 + HMPREF1058_RS05020 0.60 +0.3 267,997 - HMPREF1058_RS05020 0.75 +0.5 268,180 + -0.3 268,181 - -0.8 268,230 + +2.3 268,243 + HMPREF1058_RS05015 0.18 -0.2 268,243 + HMPREF1058_RS05015 0.18 -1.8 268,244 - HMPREF1058_RS05015 0.18 -1.8 268,367 - HMPREF1058_RS05015 0.78 +0.6 268,421 - -0.2 268,421 - -0.5 268,679 - HMPREF1058_RS05010 0.24 -0.3 268,734 + HMPREF1058_RS05010 0.35 -1.2 268,758 + HMPREF1058_RS05010 0.39 +0.9 268,759 - HMPREF1058_RS05010 0.39 +0.3 268,760 + HMPREF1058_RS05010 0.40 -1.3 268,792 + HMPREF1058_RS05010 0.46 -1.5 268,793 - HMPREF1058_RS05010 0.46 -0.7 268,800 + HMPREF1058_RS05010 0.47 +1.3 268,801 - HMPREF1058_RS05010 0.48 -1.0 268,811 - HMPREF1058_RS05010 0.50 -0.8 268,842 + HMPREF1058_RS05010 0.56 +0.0 268,892 + HMPREF1058_RS05010 0.65 +0.3 268,896 + HMPREF1058_RS05010 0.66 +0.2 268,897 - HMPREF1058_RS05010 0.66 -1.6 268,897 - HMPREF1058_RS05010 0.66 +0.5 268,899 - HMPREF1058_RS05010 0.67 -2.3 268,906 + HMPREF1058_RS05010 0.68 -0.3 268,910 - +1.3 268,935 + HMPREF1058_RS05010 0.74 +0.7 268,935 + HMPREF1058_RS05010 0.74 +1.5 268,987 - HMPREF1058_RS05010 0.84 -0.1 269,072 - +3.5 269,072 - -1.2 269,072 - -1.0 269,086 + +0.3 269,087 - +1.2 269,087 - -0.0 269,099 + +0.9 269,112 + +2.3 269,169 + +0.7 269,294 + HMPREF1058_RS05005 0.19 -2.3 269,513 - HMPREF1058_RS05005 0.65 +0.1 269,517 + HMPREF1058_RS05005 0.65 -0.5 269,517 + HMPREF1058_RS05005 0.65 -1.0 269,555 - HMPREF1058_RS05005 0.73 -1.2 269,745 + +0.5 269,799 + -1.2 269,908 - HMPREF1058_RS05000 0.11 +0.2 269,940 + HMPREF1058_RS05000 0.14 +1.2 269,942 + HMPREF1058_RS05000 0.14 -1.3 269,943 - HMPREF1058_RS05000 0.14 -0.1 269,943 - HMPREF1058_RS05000 0.14 +0.4 269,953 - HMPREF1058_RS05000 0.15 -0.4 269,967 - HMPREF1058_RS05000 0.16 +1.1 269,994 + HMPREF1058_RS05000 0.18 -0.3 270,013 + HMPREF1058_RS05000 0.20 -0.3 270,014 - HMPREF1058_RS05000 0.20 -2.2 270,016 + HMPREF1058_RS05000 0.20 +1.0
Or see this region's nucleotide sequence