Experiment: Control_ECOR27
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt solA and yceO are separated by 47 nucleotides yceO and yceJ are separated by 260 nucleotides yceJ and yceI are separated by 3 nucleotides yceI and trhO are separated by 41 nucleotides
NOLOHH_21275: solA - N-methyl-L-tryptophan oxidase, at 4,183,467 to 4,184,585
solA
NOLOHH_21280: yceO - Uncharacterized protein YceO, at 4,184,633 to 4,184,746
yceO
NOLOHH_21285: yceJ - Cytochrome b561-like protein, at 4,185,007 to 4,185,573
yceJ
NOLOHH_21290: yceI - YceI family protein, at 4,185,577 to 4,186,152
yceI
NOLOHH_21295: trhO - rhodanese-related sulfurtransferase, at 4,186,194 to 4,187,246
trhO
Position (kb) 4185
4186
4187 Strain fitness (log2 ratio) -1
0
1
2
3 at 4184.663 kb on - strand, within yceO at 4185.006 kb on + strand at 4185.042 kb on + strand at 4185.075 kb on + strand, within yceJ at 4185.298 kb on + strand, within yceJ at 4185.298 kb on + strand, within yceJ at 4185.302 kb on + strand, within yceJ at 4185.464 kb on + strand, within yceJ at 4185.464 kb on + strand, within yceJ at 4185.467 kb on + strand, within yceJ at 4185.711 kb on + strand, within yceI at 4186.059 kb on + strand, within yceI at 4186.248 kb on - strand at 4186.248 kb on - strand at 4186.248 kb on - strand at 4186.248 kb on - strand at 4186.260 kb on - strand at 4186.416 kb on - strand, within trhO at 4186.473 kb on - strand, within trhO at 4186.473 kb on - strand, within trhO at 4186.473 kb on - strand, within trhO at 4186.473 kb on - strand, within trhO at 4186.515 kb on - strand, within trhO at 4186.652 kb on - strand, within trhO at 4186.652 kb on - strand, within trhO at 4186.652 kb on - strand, within trhO at 4186.652 kb on - strand, within trhO at 4186.766 kb on - strand, within trhO at 4186.766 kb on - strand, within trhO at 4186.791 kb on - strand, within trhO at 4186.795 kb on - strand, within trhO at 4186.795 kb on - strand, within trhO at 4186.844 kb on - strand, within trhO at 4187.071 kb on + strand, within trhO at 4187.072 kb on - strand, within trhO at 4187.072 kb on - strand, within trhO at 4187.111 kb on - strand, within trhO at 4187.113 kb on - strand, within trhO at 4187.113 kb on - strand, within trhO at 4187.113 kb on - strand, within trhO
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECOR27 remove 4,184,663 - yceO NOLOHH_21280 0.26 +0.0 4,185,006 + +3.4 4,185,042 + -0.8 4,185,075 + yceJ NOLOHH_21285 0.12 +0.7 4,185,298 + yceJ NOLOHH_21285 0.51 -1.1 4,185,298 + yceJ NOLOHH_21285 0.51 +1.4 4,185,302 + yceJ NOLOHH_21285 0.52 -0.9 4,185,464 + yceJ NOLOHH_21285 0.81 +0.5 4,185,464 + yceJ NOLOHH_21285 0.81 -1.1 4,185,467 + yceJ NOLOHH_21285 0.81 +0.5 4,185,711 + yceI NOLOHH_21290 0.23 -1.1 4,186,059 + yceI NOLOHH_21290 0.84 -0.9 4,186,248 - +0.0 4,186,248 - -0.1 4,186,248 - -0.2 4,186,248 - -0.1 4,186,260 - -0.6 4,186,416 - trhO NOLOHH_21295 0.21 +1.1 4,186,473 - trhO NOLOHH_21295 0.26 +1.2 4,186,473 - trhO NOLOHH_21295 0.26 -0.8 4,186,473 - trhO NOLOHH_21295 0.26 +0.1 4,186,473 - trhO NOLOHH_21295 0.26 -1.1 4,186,515 - trhO NOLOHH_21295 0.30 +0.2 4,186,652 - trhO NOLOHH_21295 0.43 +0.3 4,186,652 - trhO NOLOHH_21295 0.43 +2.5 4,186,652 - trhO NOLOHH_21295 0.43 -0.3 4,186,652 - trhO NOLOHH_21295 0.43 +0.3 4,186,766 - trhO NOLOHH_21295 0.54 -1.6 4,186,766 - trhO NOLOHH_21295 0.54 -0.3 4,186,791 - trhO NOLOHH_21295 0.57 +0.5 4,186,795 - trhO NOLOHH_21295 0.57 -0.8 4,186,795 - trhO NOLOHH_21295 0.57 +0.2 4,186,844 - trhO NOLOHH_21295 0.62 +1.8 4,187,071 + trhO NOLOHH_21295 0.83 -1.3 4,187,072 - trhO NOLOHH_21295 0.83 +1.4 4,187,072 - trhO NOLOHH_21295 0.83 +1.4 4,187,111 - trhO NOLOHH_21295 0.87 -0.6 4,187,113 - trhO NOLOHH_21295 0.87 +0.3 4,187,113 - trhO NOLOHH_21295 0.87 -0.6 4,187,113 - trhO NOLOHH_21295 0.87 +0.2
Or see this region's nucleotide sequence