Strain Fitness in Escherichia coli ECOR27 around NOLOHH_19280

Experiment: Control_ECOR27

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrlhA and sutR are separated by 72 nucleotidessutR and ydcO are separated by 91 nucleotides NOLOHH_19275: rlhA - 23S rRNA 5-hydroxycytidine C2501 synthase, at 3,797,304 to 3,799,265 rlhA NOLOHH_19280: sutR - DNA-binding transcriptional regulator SutR, at 3,799,338 to 3,799,874 sutR NOLOHH_19285: ydcO - BenE family transporter YdcO, at 3,799,966 to 3,801,141 ydcO Position (kb) 3799 3800Strain fitness (log2 ratio) -2 -1 0 1 2at 3798.507 kb on - strand, within rlhAat 3798.518 kb on - strand, within rlhAat 3798.918 kb on - strand, within rlhAat 3799.115 kb on + strandat 3799.171 kb on + strandat 3799.197 kb on - strandat 3799.234 kb on - strandat 3799.404 kb on - strand, within sutRat 3799.446 kb on - strand, within sutRat 3799.839 kb on - strandat 3800.021 kb on + strandat 3800.424 kb on + strand, within ydcOat 3800.567 kb on - strand, within ydcOat 3800.784 kb on + strand, within ydcOat 3800.857 kb on + strand, within ydcO

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECOR27
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3,798,507 - rlhA NOLOHH_19275 0.61 -0.4
3,798,518 - rlhA NOLOHH_19275 0.62 -1.0
3,798,918 - rlhA NOLOHH_19275 0.82 +0.1
3,799,115 + +2.2
3,799,171 + +0.1
3,799,197 - +0.9
3,799,234 - -0.9
3,799,404 - sutR NOLOHH_19280 0.12 -0.4
3,799,446 - sutR NOLOHH_19280 0.20 -1.9
3,799,839 - -2.1
3,800,021 + -0.0
3,800,424 + ydcO NOLOHH_19285 0.39 +0.7
3,800,567 - ydcO NOLOHH_19285 0.51 -0.7
3,800,784 + ydcO NOLOHH_19285 0.70 +0.6
3,800,857 + ydcO NOLOHH_19285 0.76 -1.4

Or see this region's nucleotide sequence