Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse15; day7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS00630 and HMPREF1058_RS00625 are separated by 27 nucleotides HMPREF1058_RS00625 and HMPREF1058_RS00620 are separated by 15 nucleotides
HMPREF1058_RS00630: HMPREF1058_RS00630 - carbohydrate kinase, at 29,238 to 30,125
_RS00630
HMPREF1058_RS00625: HMPREF1058_RS00625 - MFS transporter, at 30,153 to 31,313
_RS00625
HMPREF1058_RS00620: HMPREF1058_RS00620 - GH32 C-terminal domain-containing protein, at 31,329 to 33,212
_RS00620
Position (kb) 30
31
32 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 29.158 kb on - strand at 29.298 kb on + strand at 29.298 kb on + strand at 29.299 kb on - strand at 29.299 kb on - strand at 29.299 kb on - strand at 29.299 kb on - strand at 29.302 kb on + strand at 29.303 kb on - strand at 29.327 kb on + strand, within HMPREF1058_RS00630 at 29.465 kb on - strand, within HMPREF1058_RS00630 at 29.510 kb on - strand, within HMPREF1058_RS00630 at 29.534 kb on + strand, within HMPREF1058_RS00630 at 29.567 kb on + strand, within HMPREF1058_RS00630 at 29.609 kb on + strand, within HMPREF1058_RS00630 at 29.649 kb on - strand, within HMPREF1058_RS00630 at 29.775 kb on + strand, within HMPREF1058_RS00630 at 29.825 kb on + strand, within HMPREF1058_RS00630 at 29.850 kb on + strand, within HMPREF1058_RS00630 at 29.857 kb on + strand, within HMPREF1058_RS00630 at 29.858 kb on - strand, within HMPREF1058_RS00630 at 29.861 kb on + strand at 29.861 kb on + strand, within HMPREF1058_RS00630 at 29.862 kb on - strand, within HMPREF1058_RS00630 at 29.862 kb on - strand, within HMPREF1058_RS00630 at 29.862 kb on - strand, within HMPREF1058_RS00630 at 29.862 kb on - strand, within HMPREF1058_RS00630 at 29.862 kb on - strand, within HMPREF1058_RS00630 at 29.862 kb on - strand, within HMPREF1058_RS00630 at 30.131 kb on + strand at 30.131 kb on + strand at 30.175 kb on + strand at 30.175 kb on + strand at 30.176 kb on - strand at 30.176 kb on - strand at 30.188 kb on - strand at 30.268 kb on - strand at 30.356 kb on + strand, within HMPREF1058_RS00625 at 30.357 kb on - strand, within HMPREF1058_RS00625 at 30.357 kb on - strand, within HMPREF1058_RS00625 at 30.432 kb on + strand, within HMPREF1058_RS00625 at 30.506 kb on + strand, within HMPREF1058_RS00625 at 30.678 kb on - strand, within HMPREF1058_RS00625 at 30.791 kb on + strand, within HMPREF1058_RS00625 at 30.792 kb on - strand, within HMPREF1058_RS00625 at 30.794 kb on - strand, within HMPREF1058_RS00625 at 30.804 kb on + strand, within HMPREF1058_RS00625 at 30.804 kb on + strand, within HMPREF1058_RS00625 at 30.805 kb on - strand, within HMPREF1058_RS00625 at 30.865 kb on + strand, within HMPREF1058_RS00625 at 30.941 kb on + strand, within HMPREF1058_RS00625 at 30.944 kb on + strand, within HMPREF1058_RS00625 at 31.104 kb on + strand, within HMPREF1058_RS00625 at 31.109 kb on + strand, within HMPREF1058_RS00625 at 31.109 kb on + strand, within HMPREF1058_RS00625 at 31.109 kb on + strand, within HMPREF1058_RS00625 at 31.121 kb on + strand, within HMPREF1058_RS00625 at 31.122 kb on - strand at 31.127 kb on + strand, within HMPREF1058_RS00625 at 31.173 kb on + strand, within HMPREF1058_RS00625 at 31.174 kb on - strand, within HMPREF1058_RS00625 at 31.243 kb on - strand at 31.292 kb on - strand at 31.320 kb on - strand at 31.338 kb on + strand at 31.344 kb on - strand at 31.346 kb on - strand at 31.347 kb on + strand at 31.405 kb on + strand at 31.431 kb on - strand at 31.574 kb on + strand, within HMPREF1058_RS00620 at 31.585 kb on + strand, within HMPREF1058_RS00620 at 31.969 kb on - strand, within HMPREF1058_RS00620 at 31.971 kb on - strand, within HMPREF1058_RS00620 at 31.976 kb on + strand at 31.976 kb on + strand, within HMPREF1058_RS00620 at 31.979 kb on - strand, within HMPREF1058_RS00620 at 31.979 kb on - strand, within HMPREF1058_RS00620 at 31.982 kb on + strand, within HMPREF1058_RS00620 at 31.983 kb on - strand, within HMPREF1058_RS00620 at 32.007 kb on - strand, within HMPREF1058_RS00620 at 32.109 kb on + strand, within HMPREF1058_RS00620 at 32.110 kb on - strand, within HMPREF1058_RS00620 at 32.110 kb on - strand, within HMPREF1058_RS00620 at 32.139 kb on - strand, within HMPREF1058_RS00620 at 32.144 kb on - strand, within HMPREF1058_RS00620 at 32.144 kb on - strand, within HMPREF1058_RS00620 at 32.144 kb on - strand, within HMPREF1058_RS00620 at 32.226 kb on + strand, within HMPREF1058_RS00620 at 32.302 kb on + strand, within HMPREF1058_RS00620 at 32.303 kb on - strand, within HMPREF1058_RS00620
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse15; day7 remove 29,158 - +3.1 29,298 + -0.1 29,298 + -1.0 29,299 - -1.6 29,299 - -1.8 29,299 - -0.2 29,299 - -1.9 29,302 + -3.7 29,303 - -2.5 29,327 + HMPREF1058_RS00630 0.10 -3.6 29,465 - HMPREF1058_RS00630 0.26 -2.8 29,510 - HMPREF1058_RS00630 0.31 -4.2 29,534 + HMPREF1058_RS00630 0.33 -2.9 29,567 + HMPREF1058_RS00630 0.37 -3.3 29,609 + HMPREF1058_RS00630 0.42 -2.0 29,649 - HMPREF1058_RS00630 0.46 -0.9 29,775 + HMPREF1058_RS00630 0.60 -3.0 29,825 + HMPREF1058_RS00630 0.66 +1.0 29,850 + HMPREF1058_RS00630 0.69 -1.9 29,857 + HMPREF1058_RS00630 0.70 -3.3 29,858 - HMPREF1058_RS00630 0.70 -2.7 29,861 + +0.2 29,861 + HMPREF1058_RS00630 0.70 -2.5 29,862 - HMPREF1058_RS00630 0.70 -1.8 29,862 - HMPREF1058_RS00630 0.70 -1.2 29,862 - HMPREF1058_RS00630 0.70 -1.7 29,862 - HMPREF1058_RS00630 0.70 -0.0 29,862 - HMPREF1058_RS00630 0.70 -2.5 29,862 - HMPREF1058_RS00630 0.70 -2.0 30,131 + -3.5 30,131 + -2.9 30,175 + +0.2 30,175 + -2.0 30,176 - -3.4 30,176 - -1.3 30,188 - -3.3 30,268 - -3.0 30,356 + HMPREF1058_RS00625 0.17 -3.6 30,357 - HMPREF1058_RS00625 0.18 -2.3 30,357 - HMPREF1058_RS00625 0.18 -1.9 30,432 + HMPREF1058_RS00625 0.24 -0.4 30,506 + HMPREF1058_RS00625 0.30 -1.1 30,678 - HMPREF1058_RS00625 0.45 -3.3 30,791 + HMPREF1058_RS00625 0.55 -4.5 30,792 - HMPREF1058_RS00625 0.55 -2.8 30,794 - HMPREF1058_RS00625 0.55 -3.5 30,804 + HMPREF1058_RS00625 0.56 -3.6 30,804 + HMPREF1058_RS00625 0.56 -2.5 30,805 - HMPREF1058_RS00625 0.56 -1.2 30,865 + HMPREF1058_RS00625 0.61 -3.8 30,941 + HMPREF1058_RS00625 0.68 -2.5 30,944 + HMPREF1058_RS00625 0.68 -2.1 31,104 + HMPREF1058_RS00625 0.82 -4.0 31,109 + HMPREF1058_RS00625 0.82 -0.9 31,109 + HMPREF1058_RS00625 0.82 -1.8 31,109 + HMPREF1058_RS00625 0.82 -1.7 31,121 + HMPREF1058_RS00625 0.83 -1.6 31,122 - +2.6 31,127 + HMPREF1058_RS00625 0.84 -1.6 31,173 + HMPREF1058_RS00625 0.88 +1.0 31,174 - HMPREF1058_RS00625 0.88 -4.1 31,243 - -5.0 31,292 - -2.0 31,320 - -4.2 31,338 + -5.0 31,344 - +4.4 31,346 - -2.9 31,347 + -1.0 31,405 + -3.7 31,431 - -2.3 31,574 + HMPREF1058_RS00620 0.13 -3.5 31,585 + HMPREF1058_RS00620 0.14 -0.4 31,969 - HMPREF1058_RS00620 0.34 -1.8 31,971 - HMPREF1058_RS00620 0.34 -3.5 31,976 + +1.0 31,976 + HMPREF1058_RS00620 0.34 -2.4 31,979 - HMPREF1058_RS00620 0.35 -3.2 31,979 - HMPREF1058_RS00620 0.35 -0.0 31,982 + HMPREF1058_RS00620 0.35 -3.1 31,983 - HMPREF1058_RS00620 0.35 -3.8 32,007 - HMPREF1058_RS00620 0.36 -2.8 32,109 + HMPREF1058_RS00620 0.41 -2.3 32,110 - HMPREF1058_RS00620 0.41 -5.3 32,110 - HMPREF1058_RS00620 0.41 -3.8 32,139 - HMPREF1058_RS00620 0.43 -4.9 32,144 - HMPREF1058_RS00620 0.43 -0.4 32,144 - HMPREF1058_RS00620 0.43 -3.8 32,144 - HMPREF1058_RS00620 0.43 -3.7 32,226 + HMPREF1058_RS00620 0.48 -0.4 32,302 + HMPREF1058_RS00620 0.52 -3.4 32,303 - HMPREF1058_RS00620 0.52 -2.8
Or see this region's nucleotide sequence