Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS18920 and HMPREF1058_RS18915 are separated by 23 nucleotides HMPREF1058_RS18915 and HMPREF1058_RS0119260 overlap by 16 nucleotides HMPREF1058_RS0119260 and HMPREF1058_RS18910 are separated by 265 nucleotides
HMPREF1058_RS18920: HMPREF1058_RS18920 - hypothetical protein, at 47,765 to 48,406
_RS18920
HMPREF1058_RS18915: HMPREF1058_RS18915 - recombination protein NinG, at 48,430 to 48,909
_RS18915
HMPREF1058_RS0119260: HMPREF1058_RS0119260 - hypothetical protein, at 48,894 to 49,088
_RS0119260
HMPREF1058_RS18910: HMPREF1058_RS18910 - hypothetical protein, at 49,354 to 50,091
_RS18910
HMPREF1058_RS18905: HMPREF1058_RS18905 - hypothetical protein, at 50,088 to 50,519
_RS18905
Position (kb) 48
49
50 Strain fitness (log2 ratio) -2
-1
0
1
2 at 47.908 kb on + strand, within HMPREF1058_RS18920 at 47.912 kb on + strand, within HMPREF1058_RS18920 at 47.912 kb on + strand, within HMPREF1058_RS18920 at 47.914 kb on + strand, within HMPREF1058_RS18920 at 47.914 kb on + strand, within HMPREF1058_RS18920 at 47.914 kb on + strand, within HMPREF1058_RS18920 at 47.926 kb on + strand, within HMPREF1058_RS18920 at 47.993 kb on + strand, within HMPREF1058_RS18920 at 48.088 kb on + strand, within HMPREF1058_RS18920 at 48.088 kb on + strand, within HMPREF1058_RS18920 at 48.325 kb on + strand, within HMPREF1058_RS18920 at 48.325 kb on + strand, within HMPREF1058_RS18920 at 48.325 kb on + strand, within HMPREF1058_RS18920 at 48.365 kb on + strand at 48.412 kb on + strand at 48.519 kb on + strand, within HMPREF1058_RS18915 at 48.675 kb on + strand, within HMPREF1058_RS18915 at 48.686 kb on + strand, within HMPREF1058_RS18915 at 49.044 kb on + strand, within HMPREF1058_RS0119260 at 49.099 kb on + strand at 49.140 kb on + strand at 49.196 kb on + strand at 49.196 kb on + strand at 49.217 kb on + strand at 49.246 kb on + strand at 49.246 kb on + strand at 49.369 kb on + strand at 49.598 kb on + strand, within HMPREF1058_RS18910 at 49.692 kb on + strand, within HMPREF1058_RS18910 at 49.838 kb on + strand, within HMPREF1058_RS18910 at 50.029 kb on + strand at 50.051 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day9 remove 47,908 + HMPREF1058_RS18920 0.22 -0.1 47,912 + HMPREF1058_RS18920 0.23 -0.9 47,912 + HMPREF1058_RS18920 0.23 -0.8 47,914 + HMPREF1058_RS18920 0.23 -0.5 47,914 + HMPREF1058_RS18920 0.23 +0.4 47,914 + HMPREF1058_RS18920 0.23 +0.1 47,926 + HMPREF1058_RS18920 0.25 +0.5 47,993 + HMPREF1058_RS18920 0.36 -0.4 48,088 + HMPREF1058_RS18920 0.50 -1.4 48,088 + HMPREF1058_RS18920 0.50 +0.6 48,325 + HMPREF1058_RS18920 0.87 -0.5 48,325 + HMPREF1058_RS18920 0.87 +0.4 48,325 + HMPREF1058_RS18920 0.87 +0.4 48,365 + -1.3 48,412 + +2.5 48,519 + HMPREF1058_RS18915 0.19 -1.6 48,675 + HMPREF1058_RS18915 0.51 -0.1 48,686 + HMPREF1058_RS18915 0.53 +0.4 49,044 + HMPREF1058_RS0119260 0.77 +2.3 49,099 + -2.4 49,140 + +0.4 49,196 + +1.4 49,196 + +0.8 49,217 + +0.5 49,246 + -1.7 49,246 + +1.2 49,369 + -0.8 49,598 + HMPREF1058_RS18910 0.33 -0.6 49,692 + HMPREF1058_RS18910 0.46 -0.3 49,838 + HMPREF1058_RS18910 0.66 +0.1 50,029 + -1.2 50,051 + +0.8
Or see this region's nucleotide sequence