Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS10240 and HMPREF1058_RS10235 are separated by 11 nucleotides HMPREF1058_RS10235 and HMPREF1058_RS10230 overlap by 14 nucleotides HMPREF1058_RS10230 and HMPREF1058_RS10225 are separated by 103 nucleotides HMPREF1058_RS10225 and HMPREF1058_RS10220 are separated by 36 nucleotides
HMPREF1058_RS10240: HMPREF1058_RS10240 - phage portal protein, at 702,575 to 703,999
_RS10240
HMPREF1058_RS10235: HMPREF1058_RS10235 - phage portal protein, at 704,011 to 705,438
_RS10235
HMPREF1058_RS10230: HMPREF1058_RS10230 - hypothetical protein, at 705,425 to 705,892
_RS10230
HMPREF1058_RS10225: HMPREF1058_RS10225 - hypothetical protein, at 705,996 to 706,235
_RS10225
HMPREF1058_RS10220: HMPREF1058_RS10220 - hypothetical protein, at 706,272 to 706,883
_RS10220
Position (kb) 704
705
706 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 703.112 kb on + strand, within HMPREF1058_RS10240 at 703.340 kb on + strand, within HMPREF1058_RS10240 at 703.369 kb on + strand, within HMPREF1058_RS10240 at 703.395 kb on + strand, within HMPREF1058_RS10240 at 703.395 kb on + strand, within HMPREF1058_RS10240 at 703.395 kb on + strand, within HMPREF1058_RS10240 at 703.456 kb on + strand, within HMPREF1058_RS10240 at 703.604 kb on + strand, within HMPREF1058_RS10240 at 703.640 kb on + strand, within HMPREF1058_RS10240 at 703.640 kb on + strand, within HMPREF1058_RS10240 at 703.644 kb on + strand, within HMPREF1058_RS10240 at 703.659 kb on + strand, within HMPREF1058_RS10240 at 703.706 kb on + strand, within HMPREF1058_RS10240 at 703.777 kb on + strand, within HMPREF1058_RS10240 at 703.955 kb on + strand at 703.955 kb on + strand at 703.967 kb on + strand at 704.035 kb on + strand at 704.037 kb on + strand at 704.049 kb on + strand at 704.063 kb on + strand at 704.063 kb on + strand at 704.312 kb on + strand, within HMPREF1058_RS10235 at 704.344 kb on + strand, within HMPREF1058_RS10235 at 704.356 kb on + strand, within HMPREF1058_RS10235 at 704.418 kb on + strand, within HMPREF1058_RS10235 at 704.422 kb on + strand, within HMPREF1058_RS10235 at 704.571 kb on + strand, within HMPREF1058_RS10235 at 704.571 kb on + strand, within HMPREF1058_RS10235 at 704.571 kb on + strand, within HMPREF1058_RS10235 at 704.571 kb on + strand, within HMPREF1058_RS10235 at 704.573 kb on + strand, within HMPREF1058_RS10235 at 704.781 kb on + strand, within HMPREF1058_RS10235 at 704.781 kb on + strand, within HMPREF1058_RS10235 at 704.783 kb on + strand, within HMPREF1058_RS10235 at 704.783 kb on + strand, within HMPREF1058_RS10235 at 704.796 kb on + strand, within HMPREF1058_RS10235 at 704.796 kb on + strand, within HMPREF1058_RS10235 at 704.828 kb on + strand, within HMPREF1058_RS10235 at 704.828 kb on + strand, within HMPREF1058_RS10235 at 704.828 kb on + strand, within HMPREF1058_RS10235 at 704.905 kb on + strand, within HMPREF1058_RS10235 at 704.927 kb on + strand, within HMPREF1058_RS10235 at 704.982 kb on + strand, within HMPREF1058_RS10235 at 705.064 kb on + strand, within HMPREF1058_RS10235 at 705.068 kb on + strand, within HMPREF1058_RS10235 at 705.090 kb on + strand, within HMPREF1058_RS10235 at 705.099 kb on + strand, within HMPREF1058_RS10235 at 705.142 kb on + strand, within HMPREF1058_RS10235 at 705.159 kb on + strand, within HMPREF1058_RS10235 at 705.272 kb on + strand, within HMPREF1058_RS10235 at 705.412 kb on + strand at 705.637 kb on + strand, within HMPREF1058_RS10230 at 705.739 kb on + strand, within HMPREF1058_RS10230 at 705.868 kb on + strand at 706.080 kb on + strand, within HMPREF1058_RS10225 at 706.080 kb on + strand, within HMPREF1058_RS10225 at 706.295 kb on + strand at 706.319 kb on + strand at 706.346 kb on + strand, within HMPREF1058_RS10220
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day9 remove 703,112 + HMPREF1058_RS10240 0.38 -2.5 703,340 + HMPREF1058_RS10240 0.54 +0.7 703,369 + HMPREF1058_RS10240 0.56 +0.3 703,395 + HMPREF1058_RS10240 0.58 +1.1 703,395 + HMPREF1058_RS10240 0.58 +2.0 703,395 + HMPREF1058_RS10240 0.58 +0.3 703,456 + HMPREF1058_RS10240 0.62 +2.7 703,604 + HMPREF1058_RS10240 0.72 +0.4 703,640 + HMPREF1058_RS10240 0.75 +0.9 703,640 + HMPREF1058_RS10240 0.75 +2.4 703,644 + HMPREF1058_RS10240 0.75 -2.7 703,659 + HMPREF1058_RS10240 0.76 +2.3 703,706 + HMPREF1058_RS10240 0.79 +2.8 703,777 + HMPREF1058_RS10240 0.84 +1.3 703,955 + +1.6 703,955 + +0.8 703,967 + +1.1 704,035 + -0.1 704,037 + +0.3 704,049 + +1.5 704,063 + +1.5 704,063 + -1.0 704,312 + HMPREF1058_RS10235 0.21 -0.3 704,344 + HMPREF1058_RS10235 0.23 +0.6 704,356 + HMPREF1058_RS10235 0.24 +0.9 704,418 + HMPREF1058_RS10235 0.29 +0.1 704,422 + HMPREF1058_RS10235 0.29 +1.3 704,571 + HMPREF1058_RS10235 0.39 -0.1 704,571 + HMPREF1058_RS10235 0.39 +0.3 704,571 + HMPREF1058_RS10235 0.39 -2.0 704,571 + HMPREF1058_RS10235 0.39 +0.6 704,573 + HMPREF1058_RS10235 0.39 +1.3 704,781 + HMPREF1058_RS10235 0.54 -2.9 704,781 + HMPREF1058_RS10235 0.54 -1.7 704,783 + HMPREF1058_RS10235 0.54 +3.8 704,783 + HMPREF1058_RS10235 0.54 +2.0 704,796 + HMPREF1058_RS10235 0.55 +0.5 704,796 + HMPREF1058_RS10235 0.55 +1.3 704,828 + HMPREF1058_RS10235 0.57 +1.5 704,828 + HMPREF1058_RS10235 0.57 +2.7 704,828 + HMPREF1058_RS10235 0.57 +2.2 704,905 + HMPREF1058_RS10235 0.63 +0.4 704,927 + HMPREF1058_RS10235 0.64 +1.0 704,982 + HMPREF1058_RS10235 0.68 +0.1 705,064 + HMPREF1058_RS10235 0.74 -0.8 705,068 + HMPREF1058_RS10235 0.74 -2.0 705,090 + HMPREF1058_RS10235 0.76 +1.1 705,099 + HMPREF1058_RS10235 0.76 +1.3 705,142 + HMPREF1058_RS10235 0.79 +1.4 705,159 + HMPREF1058_RS10235 0.80 -2.6 705,272 + HMPREF1058_RS10235 0.88 +0.3 705,412 + +0.7 705,637 + HMPREF1058_RS10230 0.45 -1.3 705,739 + HMPREF1058_RS10230 0.67 +3.2 705,868 + +0.6 706,080 + HMPREF1058_RS10225 0.35 -4.4 706,080 + HMPREF1058_RS10225 0.35 -1.7 706,295 + +0.5 706,319 + +0.1 706,346 + HMPREF1058_RS10220 0.12 +0.4
Or see this region's nucleotide sequence