Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS08075

Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day9

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS08080 and HMPREF1058_RS08075 are separated by 121 nucleotidesHMPREF1058_RS08075 and HMPREF1058_RS08070 are separated by 177 nucleotides HMPREF1058_RS08080: HMPREF1058_RS08080 - TlpA family protein disulfide reductase, at 57,724 to 59,832 _RS08080 HMPREF1058_RS08075: HMPREF1058_RS08075 - hypothetical protein, at 59,954 to 60,727 _RS08075 HMPREF1058_RS08070: HMPREF1058_RS08070 - alpha-L-fucosidase, at 60,905 to 62,944 _RS08070 Position (kb) 59 60 61Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 59.011 kb on - strand, within HMPREF1058_RS08080at 59.012 kb on + strand, within HMPREF1058_RS08080at 59.013 kb on - strand, within HMPREF1058_RS08080at 59.064 kb on - strand, within HMPREF1058_RS08080at 59.173 kb on - strand, within HMPREF1058_RS08080at 59.173 kb on - strand, within HMPREF1058_RS08080at 59.173 kb on - strand, within HMPREF1058_RS08080at 59.205 kb on - strand, within HMPREF1058_RS08080at 59.301 kb on - strand, within HMPREF1058_RS08080at 59.301 kb on - strand, within HMPREF1058_RS08080at 59.414 kb on - strand, within HMPREF1058_RS08080at 59.589 kb on - strand, within HMPREF1058_RS08080at 59.692 kb on + strandat 59.715 kb on - strandat 59.715 kb on - strandat 59.734 kb on - strandat 59.885 kb on + strandat 59.914 kb on + strandat 59.914 kb on + strandat 59.914 kb on + strandat 59.916 kb on + strandat 59.923 kb on - strandat 59.936 kb on + strandat 60.068 kb on + strand, within HMPREF1058_RS08075at 60.142 kb on + strand, within HMPREF1058_RS08075at 60.143 kb on - strand, within HMPREF1058_RS08075at 60.144 kb on + strand, within HMPREF1058_RS08075at 60.164 kb on - strand, within HMPREF1058_RS08075at 60.248 kb on - strand, within HMPREF1058_RS08075at 60.248 kb on - strand, within HMPREF1058_RS08075at 60.347 kb on - strand, within HMPREF1058_RS08075at 60.430 kb on + strand, within HMPREF1058_RS08075at 60.430 kb on + strand, within HMPREF1058_RS08075at 60.499 kb on - strand, within HMPREF1058_RS08075at 60.499 kb on - strand, within HMPREF1058_RS08075at 60.678 kb on + strandat 60.678 kb on + strandat 60.682 kb on - strandat 60.744 kb on - strandat 60.767 kb on - strandat 60.795 kb on - strandat 60.798 kb on - strandat 60.827 kb on + strandat 60.829 kb on + strandat 60.877 kb on + strandat 60.890 kb on - strandat 61.036 kb on + strandat 61.232 kb on + strand, within HMPREF1058_RS08070at 61.232 kb on + strand, within HMPREF1058_RS08070at 61.232 kb on + strand, within HMPREF1058_RS08070at 61.246 kb on + strand, within HMPREF1058_RS08070at 61.464 kb on - strand, within HMPREF1058_RS08070at 61.514 kb on + strand, within HMPREF1058_RS08070at 61.527 kb on - strand, within HMPREF1058_RS08070at 61.553 kb on - strand, within HMPREF1058_RS08070at 61.554 kb on + strand, within HMPREF1058_RS08070at 61.555 kb on - strand, within HMPREF1058_RS08070at 61.555 kb on - strand, within HMPREF1058_RS08070at 61.603 kb on - strand, within HMPREF1058_RS08070at 61.612 kb on + strand, within HMPREF1058_RS08070at 61.651 kb on + strand, within HMPREF1058_RS08070at 61.651 kb on + strand, within HMPREF1058_RS08070

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day9
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59,011 - HMPREF1058_RS08080 0.61 -0.2
59,012 + HMPREF1058_RS08080 0.61 +0.4
59,013 - HMPREF1058_RS08080 0.61 -2.6
59,064 - HMPREF1058_RS08080 0.64 -0.9
59,173 - HMPREF1058_RS08080 0.69 -0.1
59,173 - HMPREF1058_RS08080 0.69 -0.1
59,173 - HMPREF1058_RS08080 0.69 -1.2
59,205 - HMPREF1058_RS08080 0.70 -0.1
59,301 - HMPREF1058_RS08080 0.75 +1.0
59,301 - HMPREF1058_RS08080 0.75 +1.0
59,414 - HMPREF1058_RS08080 0.80 -1.6
59,589 - HMPREF1058_RS08080 0.88 -1.6
59,692 + +0.0
59,715 - -0.3
59,715 - +1.3
59,734 - -2.2
59,885 + -1.4
59,914 + -1.2
59,914 + -1.4
59,914 + -0.8
59,916 + +0.3
59,923 - -0.4
59,936 + -1.8
60,068 + HMPREF1058_RS08075 0.15 -1.5
60,142 + HMPREF1058_RS08075 0.24 -0.2
60,143 - HMPREF1058_RS08075 0.24 +2.0
60,144 + HMPREF1058_RS08075 0.25 -2.2
60,164 - HMPREF1058_RS08075 0.27 +1.4
60,248 - HMPREF1058_RS08075 0.38 +2.4
60,248 - HMPREF1058_RS08075 0.38 +0.5
60,347 - HMPREF1058_RS08075 0.51 -2.2
60,430 + HMPREF1058_RS08075 0.61 -0.5
60,430 + HMPREF1058_RS08075 0.61 -0.6
60,499 - HMPREF1058_RS08075 0.70 -0.9
60,499 - HMPREF1058_RS08075 0.70 +1.0
60,678 + -2.4
60,678 + -0.1
60,682 - -0.8
60,744 - +2.0
60,767 - +1.4
60,795 - +2.0
60,798 - -0.7
60,827 + +2.0
60,829 + -1.0
60,877 + +0.0
60,890 - +0.4
61,036 + -0.2
61,232 + HMPREF1058_RS08070 0.16 +1.7
61,232 + HMPREF1058_RS08070 0.16 +0.0
61,232 + HMPREF1058_RS08070 0.16 -1.1
61,246 + HMPREF1058_RS08070 0.17 -0.9
61,464 - HMPREF1058_RS08070 0.27 -3.2
61,514 + HMPREF1058_RS08070 0.30 -1.8
61,527 - HMPREF1058_RS08070 0.30 +1.3
61,553 - HMPREF1058_RS08070 0.32 +1.4
61,554 + HMPREF1058_RS08070 0.32 -0.9
61,555 - HMPREF1058_RS08070 0.32 -2.2
61,555 - HMPREF1058_RS08070 0.32 -2.8
61,603 - HMPREF1058_RS08070 0.34 -0.9
61,612 + HMPREF1058_RS08070 0.35 -1.9
61,651 + HMPREF1058_RS08070 0.37 +0.1
61,651 + HMPREF1058_RS08070 0.37 +0.2

Or see this region's nucleotide sequence