Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS01695 and HMPREF1058_RS01690 are separated by 243 nucleotides HMPREF1058_RS01690 and HMPREF1058_RS01685 are separated by 109 nucleotides
HMPREF1058_RS01695: HMPREF1058_RS01695 - LacI family DNA-binding transcriptional regulator, at 64,748 to 65,821
_RS01695
HMPREF1058_RS01690: HMPREF1058_RS01690 - sugar kinase, at 66,065 to 67,087
_RS01690
HMPREF1058_RS01685: HMPREF1058_RS01685 - bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase, at 67,197 to 67,871
_RS01685
Position (kb) 66
67
68 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 65.129 kb on + strand, within HMPREF1058_RS01695 at 65.353 kb on + strand, within HMPREF1058_RS01695 at 65.354 kb on - strand, within HMPREF1058_RS01695 at 65.357 kb on + strand, within HMPREF1058_RS01695 at 65.358 kb on - strand, within HMPREF1058_RS01695 at 65.359 kb on + strand, within HMPREF1058_RS01695 at 65.361 kb on + strand, within HMPREF1058_RS01695 at 65.361 kb on + strand, within HMPREF1058_RS01695 at 65.488 kb on - strand, within HMPREF1058_RS01695 at 65.505 kb on + strand, within HMPREF1058_RS01695 at 65.655 kb on + strand, within HMPREF1058_RS01695 at 65.656 kb on - strand, within HMPREF1058_RS01695 at 65.660 kb on - strand, within HMPREF1058_RS01695 at 65.660 kb on - strand, within HMPREF1058_RS01695 at 65.831 kb on - strand at 65.835 kb on - strand at 65.837 kb on - strand at 65.881 kb on + strand at 65.913 kb on + strand at 65.913 kb on + strand at 66.038 kb on + strand at 66.215 kb on + strand, within HMPREF1058_RS01690 at 66.279 kb on - strand, within HMPREF1058_RS01690 at 66.329 kb on + strand, within HMPREF1058_RS01690 at 66.330 kb on - strand, within HMPREF1058_RS01690 at 66.375 kb on - strand, within HMPREF1058_RS01690 at 66.434 kb on - strand, within HMPREF1058_RS01690 at 66.630 kb on + strand, within HMPREF1058_RS01690 at 66.630 kb on + strand, within HMPREF1058_RS01690 at 66.630 kb on + strand, within HMPREF1058_RS01690 at 66.631 kb on - strand, within HMPREF1058_RS01690 at 66.631 kb on - strand, within HMPREF1058_RS01690 at 66.636 kb on + strand, within HMPREF1058_RS01690 at 66.636 kb on + strand, within HMPREF1058_RS01690 at 66.636 kb on + strand, within HMPREF1058_RS01690 at 66.637 kb on - strand, within HMPREF1058_RS01690 at 66.640 kb on + strand, within HMPREF1058_RS01690 at 66.642 kb on + strand, within HMPREF1058_RS01690 at 66.642 kb on + strand, within HMPREF1058_RS01690 at 66.725 kb on + strand, within HMPREF1058_RS01690 at 66.745 kb on + strand, within HMPREF1058_RS01690 at 66.767 kb on - strand, within HMPREF1058_RS01690 at 66.770 kb on + strand, within HMPREF1058_RS01690 at 66.771 kb on - strand, within HMPREF1058_RS01690 at 66.771 kb on - strand, within HMPREF1058_RS01690 at 66.782 kb on - strand, within HMPREF1058_RS01690 at 66.826 kb on + strand, within HMPREF1058_RS01690 at 66.827 kb on - strand, within HMPREF1058_RS01690 at 67.001 kb on - strand at 67.121 kb on + strand at 67.146 kb on + strand at 67.153 kb on - strand at 67.188 kb on + strand at 67.190 kb on + strand at 67.423 kb on + strand, within HMPREF1058_RS01685 at 67.423 kb on + strand, within HMPREF1058_RS01685 at 67.423 kb on + strand, within HMPREF1058_RS01685 at 67.487 kb on - strand, within HMPREF1058_RS01685 at 67.542 kb on + strand, within HMPREF1058_RS01685 at 67.545 kb on - strand, within HMPREF1058_RS01685 at 67.628 kb on - strand, within HMPREF1058_RS01685 at 67.790 kb on - strand, within HMPREF1058_RS01685 at 67.810 kb on - strand at 67.814 kb on - strand at 67.843 kb on - strand at 67.934 kb on - strand at 67.946 kb on - strand at 68.058 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day9 remove 65,129 + HMPREF1058_RS01695 0.35 -2.3 65,353 + HMPREF1058_RS01695 0.56 -1.8 65,354 - HMPREF1058_RS01695 0.56 -0.3 65,357 + HMPREF1058_RS01695 0.57 -0.6 65,358 - HMPREF1058_RS01695 0.57 +0.6 65,359 + HMPREF1058_RS01695 0.57 -0.4 65,361 + HMPREF1058_RS01695 0.57 -0.4 65,361 + HMPREF1058_RS01695 0.57 +0.6 65,488 - HMPREF1058_RS01695 0.69 -2.9 65,505 + HMPREF1058_RS01695 0.70 -1.0 65,655 + HMPREF1058_RS01695 0.84 -1.8 65,656 - HMPREF1058_RS01695 0.85 +0.2 65,660 - HMPREF1058_RS01695 0.85 -1.6 65,660 - HMPREF1058_RS01695 0.85 -2.1 65,831 - -1.0 65,835 - +0.2 65,837 - +0.0 65,881 + -2.0 65,913 + +2.5 65,913 + -2.5 66,038 + -0.8 66,215 + HMPREF1058_RS01690 0.15 -0.2 66,279 - HMPREF1058_RS01690 0.21 -1.0 66,329 + HMPREF1058_RS01690 0.26 -1.7 66,330 - HMPREF1058_RS01690 0.26 -0.1 66,375 - HMPREF1058_RS01690 0.30 -4.0 66,434 - HMPREF1058_RS01690 0.36 -2.8 66,630 + HMPREF1058_RS01690 0.55 -0.6 66,630 + HMPREF1058_RS01690 0.55 -1.6 66,630 + HMPREF1058_RS01690 0.55 -2.2 66,631 - HMPREF1058_RS01690 0.55 -0.8 66,631 - HMPREF1058_RS01690 0.55 +0.6 66,636 + HMPREF1058_RS01690 0.56 -2.3 66,636 + HMPREF1058_RS01690 0.56 -1.1 66,636 + HMPREF1058_RS01690 0.56 -0.6 66,637 - HMPREF1058_RS01690 0.56 -0.1 66,640 + HMPREF1058_RS01690 0.56 -2.3 66,642 + HMPREF1058_RS01690 0.56 -1.1 66,642 + HMPREF1058_RS01690 0.56 -2.6 66,725 + HMPREF1058_RS01690 0.65 -3.1 66,745 + HMPREF1058_RS01690 0.66 -0.1 66,767 - HMPREF1058_RS01690 0.69 -0.6 66,770 + HMPREF1058_RS01690 0.69 -1.3 66,771 - HMPREF1058_RS01690 0.69 -2.4 66,771 - HMPREF1058_RS01690 0.69 -1.1 66,782 - HMPREF1058_RS01690 0.70 -3.0 66,826 + HMPREF1058_RS01690 0.74 -2.8 66,827 - HMPREF1058_RS01690 0.74 -2.5 67,001 - -3.0 67,121 + -0.6 67,146 + -1.8 67,153 - -2.1 67,188 + -1.3 67,190 + -1.0 67,423 + HMPREF1058_RS01685 0.33 -1.5 67,423 + HMPREF1058_RS01685 0.33 -2.1 67,423 + HMPREF1058_RS01685 0.33 -0.6 67,487 - HMPREF1058_RS01685 0.43 +0.6 67,542 + HMPREF1058_RS01685 0.51 -3.2 67,545 - HMPREF1058_RS01685 0.52 -0.1 67,628 - HMPREF1058_RS01685 0.64 -3.1 67,790 - HMPREF1058_RS01685 0.88 -1.1 67,810 - -2.8 67,814 - -3.3 67,843 - -3.7 67,934 - -1.7 67,946 - +0.1 68,058 - +0.7
Or see this region's nucleotide sequence