Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS15905

Experiment: Experiment:PE, population C11, passage 1 (PE-S-C11-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:PE, population C11, passage 1 (PE-S-C11-P1)
3,005,648	+				-0.6
3,005,651	+				+1.5
3,005,651	+				+1.0
3,005,651	+				-0.5
3,005,879	+		LU632_RS15900	0.79	-1.5
3,006,077	-				-1.3
3,006,206	+				-3.3
3,006,207	-				+1.1
3,006,207	-				-0.8
3,006,207	-				+0.6
3,006,252	-				-0.3
3,006,252	-				+0.8
3,006,415	-	galT	LU632_RS15905	0.20	+0.5
3,006,558	-	galT	LU632_RS15905	0.33	-1.2
3,006,763	+	galT	LU632_RS15905	0.53	-2.9
3,006,764	-	galT	LU632_RS15905	0.53	-0.7
3,006,931	+	galT	LU632_RS15905	0.69	-3.0
3,007,065	-	galT	LU632_RS15905	0.82	-1.8
3,007,065	-	galT	LU632_RS15905	0.82	-1.4
3,007,065	-	galT	LU632_RS15905	0.82	-3.1
3,007,230	-				+0.1
3,007,267	-				-1.8
3,007,321	+				+1.1
3,007,321	+				+2.0
3,007,322	-				-0.6
3,007,373	-				-0.2
3,007,373	-				-0.1
3,007,373	-				-0.8
3,007,373	-				+1.1
3,007,541	+	galK	LU632_RS15910	0.25	+0.5
3,007,542	-	galK	LU632_RS15910	0.25	+1.5
3,007,542	-	galK	LU632_RS15910	0.25	-0.8
3,007,542	-	galK	LU632_RS15910	0.25	-1.6
3,007,600	+	galK	LU632_RS15910	0.30	-1.6
3,007,786	-	galK	LU632_RS15910	0.46	-0.8
3,007,925	+	galK	LU632_RS15910	0.58	+1.2
3,007,926	-	galK	LU632_RS15910	0.58	-0.8
3,007,926	-	galK	LU632_RS15910	0.58	+1.0
3,008,197	+	galK	LU632_RS15910	0.82	-2.1