Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS18690 and HMPREF1058_RS18685 are separated by 121 nucleotides HMPREF1058_RS18685 and HMPREF1058_RS18680 are separated by 5 nucleotides HMPREF1058_RS18680 and HMPREF1058_RS18675 are separated by 10 nucleotides HMPREF1058_RS18675 and HMPREF1058_RS18670 are separated by 31 nucleotides
HMPREF1058_RS18690: HMPREF1058_RS18690 - F0F1 ATP synthase subunit alpha, at 100,015 to 101,607
_RS18690
HMPREF1058_RS18685: HMPREF1058_RS18685 - F0F1 ATP synthase subunit delta, at 101,729 to 102,286
_RS18685
HMPREF1058_RS18680: HMPREF1058_RS18680 - F0F1 ATP synthase subunit B, at 102,292 to 102,792
_RS18680
HMPREF1058_RS18675: HMPREF1058_RS18675 - ATP synthase F0 subunit C, at 102,803 to 103,057
_RS18675
HMPREF1058_RS18670: HMPREF1058_RS18670 - F0F1 ATP synthase subunit A, at 103,089 to 104,180
_RS18670
Position (kb) 101
102
103 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 100.805 kb on + strand, within HMPREF1058_RS18690 at 100.805 kb on + strand, within HMPREF1058_RS18690 at 100.805 kb on + strand, within HMPREF1058_RS18690 at 100.805 kb on + strand, within HMPREF1058_RS18690 at 100.806 kb on - strand, within HMPREF1058_RS18690 at 100.811 kb on - strand, within HMPREF1058_RS18690 at 100.841 kb on + strand, within HMPREF1058_RS18690 at 100.913 kb on - strand, within HMPREF1058_RS18690 at 100.923 kb on + strand, within HMPREF1058_RS18690 at 100.923 kb on + strand, within HMPREF1058_RS18690 at 100.924 kb on - strand, within HMPREF1058_RS18690 at 100.997 kb on - strand, within HMPREF1058_RS18690 at 101.012 kb on - strand, within HMPREF1058_RS18690 at 101.030 kb on + strand, within HMPREF1058_RS18690 at 101.030 kb on + strand, within HMPREF1058_RS18690 at 101.031 kb on - strand, within HMPREF1058_RS18690 at 101.059 kb on + strand, within HMPREF1058_RS18690 at 101.060 kb on - strand, within HMPREF1058_RS18690 at 101.291 kb on - strand, within HMPREF1058_RS18690 at 101.296 kb on - strand, within HMPREF1058_RS18690 at 101.313 kb on + strand, within HMPREF1058_RS18690 at 101.313 kb on + strand, within HMPREF1058_RS18690 at 101.314 kb on - strand, within HMPREF1058_RS18690 at 101.314 kb on - strand, within HMPREF1058_RS18690 at 101.389 kb on + strand, within HMPREF1058_RS18690 at 101.389 kb on + strand, within HMPREF1058_RS18690 at 101.390 kb on - strand, within HMPREF1058_RS18690 at 101.481 kb on + strand at 101.488 kb on + strand at 101.579 kb on - strand at 101.607 kb on + strand at 101.617 kb on - strand at 101.658 kb on - strand at 101.666 kb on + strand at 101.685 kb on + strand at 101.735 kb on + strand at 101.736 kb on - strand at 101.750 kb on - strand at 101.754 kb on - strand at 101.756 kb on - strand at 101.871 kb on - strand, within HMPREF1058_RS18685 at 101.918 kb on + strand, within HMPREF1058_RS18685 at 101.953 kb on + strand, within HMPREF1058_RS18685 at 101.995 kb on - strand, within HMPREF1058_RS18685 at 101.995 kb on - strand, within HMPREF1058_RS18685 at 102.001 kb on + strand, within HMPREF1058_RS18685 at 102.080 kb on - strand, within HMPREF1058_RS18685 at 102.178 kb on + strand, within HMPREF1058_RS18685 at 102.204 kb on + strand, within HMPREF1058_RS18685 at 102.237 kb on + strand at 102.278 kb on + strand at 102.278 kb on + strand at 102.278 kb on + strand at 102.278 kb on + strand at 102.279 kb on - strand at 102.279 kb on - strand at 102.282 kb on + strand at 102.282 kb on + strand at 102.282 kb on + strand at 102.282 kb on + strand at 102.283 kb on - strand at 102.283 kb on - strand at 102.286 kb on + strand at 102.403 kb on + strand, within HMPREF1058_RS18680 at 102.404 kb on - strand, within HMPREF1058_RS18680 at 102.409 kb on + strand, within HMPREF1058_RS18680 at 102.409 kb on + strand, within HMPREF1058_RS18680 at 102.613 kb on - strand, within HMPREF1058_RS18680 at 102.616 kb on - strand, within HMPREF1058_RS18680 at 102.661 kb on + strand, within HMPREF1058_RS18680 at 102.662 kb on - strand, within HMPREF1058_RS18680 at 102.663 kb on + strand, within HMPREF1058_RS18680 at 102.663 kb on + strand, within HMPREF1058_RS18680 at 102.665 kb on + strand, within HMPREF1058_RS18680 at 102.666 kb on - strand, within HMPREF1058_RS18680 at 102.781 kb on + strand at 102.795 kb on + strand at 102.795 kb on + strand at 102.807 kb on - strand at 102.874 kb on + strand, within HMPREF1058_RS18675 at 102.875 kb on - strand, within HMPREF1058_RS18675 at 102.875 kb on - strand, within HMPREF1058_RS18675 at 102.875 kb on - strand, within HMPREF1058_RS18675 at 102.881 kb on - strand, within HMPREF1058_RS18675 at 102.982 kb on + strand, within HMPREF1058_RS18675 at 102.983 kb on - strand, within HMPREF1058_RS18675 at 103.004 kb on + strand, within HMPREF1058_RS18675 at 103.005 kb on - strand, within HMPREF1058_RS18675 at 103.058 kb on - strand at 103.060 kb on + strand at 103.160 kb on + strand at 103.164 kb on + strand at 103.164 kb on + strand at 103.165 kb on - strand at 103.165 kb on - strand at 103.168 kb on + strand at 103.169 kb on - strand at 103.208 kb on + strand, within HMPREF1058_RS18670 at 103.275 kb on - strand, within HMPREF1058_RS18670
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day4 remove 100,805 + HMPREF1058_RS18690 0.50 -2.0 100,805 + HMPREF1058_RS18690 0.50 -2.3 100,805 + HMPREF1058_RS18690 0.50 -3.4 100,805 + HMPREF1058_RS18690 0.50 -1.3 100,806 - HMPREF1058_RS18690 0.50 -1.3 100,811 - HMPREF1058_RS18690 0.50 -0.4 100,841 + HMPREF1058_RS18690 0.52 -2.0 100,913 - HMPREF1058_RS18690 0.56 -0.0 100,923 + HMPREF1058_RS18690 0.57 -2.4 100,923 + HMPREF1058_RS18690 0.57 -1.4 100,924 - HMPREF1058_RS18690 0.57 -2.4 100,997 - HMPREF1058_RS18690 0.62 -1.0 101,012 - HMPREF1058_RS18690 0.63 -0.2 101,030 + HMPREF1058_RS18690 0.64 -1.4 101,030 + HMPREF1058_RS18690 0.64 -0.7 101,031 - HMPREF1058_RS18690 0.64 -1.1 101,059 + HMPREF1058_RS18690 0.66 -1.5 101,060 - HMPREF1058_RS18690 0.66 -1.4 101,291 - HMPREF1058_RS18690 0.80 -0.9 101,296 - HMPREF1058_RS18690 0.80 -1.8 101,313 + HMPREF1058_RS18690 0.81 -0.6 101,313 + HMPREF1058_RS18690 0.81 -1.1 101,314 - HMPREF1058_RS18690 0.82 -1.3 101,314 - HMPREF1058_RS18690 0.82 -0.9 101,389 + HMPREF1058_RS18690 0.86 -0.5 101,389 + HMPREF1058_RS18690 0.86 -0.6 101,390 - HMPREF1058_RS18690 0.86 -1.5 101,481 + +0.1 101,488 + -2.2 101,579 - -2.6 101,607 + -2.2 101,617 - -0.6 101,658 - +0.7 101,666 + -1.1 101,685 + -1.9 101,735 + -1.9 101,736 - -0.8 101,750 - +0.3 101,754 - +1.1 101,756 - -0.0 101,871 - HMPREF1058_RS18685 0.25 -2.2 101,918 + HMPREF1058_RS18685 0.34 -1.7 101,953 + HMPREF1058_RS18685 0.40 -2.2 101,995 - HMPREF1058_RS18685 0.48 -3.4 101,995 - HMPREF1058_RS18685 0.48 -2.4 102,001 + HMPREF1058_RS18685 0.49 -1.7 102,080 - HMPREF1058_RS18685 0.63 -1.4 102,178 + HMPREF1058_RS18685 0.80 -1.4 102,204 + HMPREF1058_RS18685 0.85 -1.6 102,237 + -1.9 102,278 + -2.7 102,278 + -1.1 102,278 + -1.7 102,278 + -4.1 102,279 - -1.5 102,279 - -1.6 102,282 + -1.7 102,282 + -0.6 102,282 + -1.7 102,282 + -1.3 102,283 - -2.3 102,283 - -2.1 102,286 + -1.4 102,403 + HMPREF1058_RS18680 0.22 -2.6 102,404 - HMPREF1058_RS18680 0.22 -1.2 102,409 + HMPREF1058_RS18680 0.23 -2.2 102,409 + HMPREF1058_RS18680 0.23 -0.9 102,613 - HMPREF1058_RS18680 0.64 -2.2 102,616 - HMPREF1058_RS18680 0.65 -3.7 102,661 + HMPREF1058_RS18680 0.74 -2.9 102,662 - HMPREF1058_RS18680 0.74 -1.2 102,663 + HMPREF1058_RS18680 0.74 -1.4 102,663 + HMPREF1058_RS18680 0.74 -0.9 102,665 + HMPREF1058_RS18680 0.74 -0.2 102,666 - HMPREF1058_RS18680 0.75 -2.3 102,781 + -2.0 102,795 + -0.9 102,795 + -2.0 102,807 - -1.9 102,874 + HMPREF1058_RS18675 0.28 -2.4 102,875 - HMPREF1058_RS18675 0.28 -2.7 102,875 - HMPREF1058_RS18675 0.28 -1.9 102,875 - HMPREF1058_RS18675 0.28 -0.4 102,881 - HMPREF1058_RS18675 0.31 -1.1 102,982 + HMPREF1058_RS18675 0.70 -2.7 102,983 - HMPREF1058_RS18675 0.71 -1.4 103,004 + HMPREF1058_RS18675 0.79 -2.4 103,005 - HMPREF1058_RS18675 0.79 -0.9 103,058 - -1.4 103,060 + -1.6 103,160 + -1.7 103,164 + -3.3 103,164 + -0.7 103,165 - -1.2 103,165 - -1.7 103,168 + +1.1 103,169 - -1.7 103,208 + HMPREF1058_RS18670 0.11 -0.5 103,275 - HMPREF1058_RS18670 0.17 -0.9
Or see this region's nucleotide sequence