Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS02810 and HMPREF1058_RS02805 are separated by 338 nucleotides HMPREF1058_RS02805 and HMPREF1058_RS02800 are separated by 231 nucleotides HMPREF1058_RS02800 and HMPREF1058_RS02795 are separated by 31 nucleotides HMPREF1058_RS02795 and HMPREF1058_RS02790 are separated by 1 nucleotides
HMPREF1058_RS02810: HMPREF1058_RS02810 - RNA polymerase sigma-70 factor, at 89,640 to 90,230
_RS02810
HMPREF1058_RS02805: HMPREF1058_RS02805 - tRNA-Met, at 90,569 to 90,641
_RS02805
HMPREF1058_RS02800: HMPREF1058_RS02800 - TetR/AcrR family transcriptional regulator, at 90,873 to 91,472
_RS02800
HMPREF1058_RS02795: HMPREF1058_RS02795 - 3-oxoacyl-[acyl-carrier-protein] reductase, at 91,504 to 92,250
_RS02795
HMPREF1058_RS02790: HMPREF1058_RS02790 - RNA pseudouridine synthase, at 92,252 to 92,923
_RS02790
Position (kb) 90
91
92 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 90.026 kb on - strand, within HMPREF1058_RS02810 at 90.026 kb on - strand, within HMPREF1058_RS02810 at 90.076 kb on + strand, within HMPREF1058_RS02810 at 90.092 kb on + strand, within HMPREF1058_RS02810 at 90.099 kb on - strand, within HMPREF1058_RS02810 at 90.114 kb on + strand, within HMPREF1058_RS02810 at 90.127 kb on + strand, within HMPREF1058_RS02810 at 90.127 kb on + strand, within HMPREF1058_RS02810 at 90.189 kb on - strand at 90.202 kb on + strand at 90.203 kb on - strand at 90.267 kb on - strand at 90.348 kb on - strand at 90.354 kb on - strand at 90.354 kb on - strand at 90.370 kb on + strand at 90.467 kb on - strand at 90.487 kb on + strand at 90.753 kb on + strand at 90.797 kb on - strand at 90.816 kb on + strand at 90.847 kb on + strand at 90.849 kb on + strand at 90.870 kb on + strand at 90.962 kb on + strand, within HMPREF1058_RS02800 at 90.999 kb on + strand, within HMPREF1058_RS02800 at 91.001 kb on + strand, within HMPREF1058_RS02800 at 91.001 kb on + strand, within HMPREF1058_RS02800 at 91.001 kb on + strand, within HMPREF1058_RS02800 at 91.029 kb on + strand, within HMPREF1058_RS02800 at 91.202 kb on + strand, within HMPREF1058_RS02800 at 91.202 kb on + strand, within HMPREF1058_RS02800 at 91.202 kb on + strand, within HMPREF1058_RS02800 at 91.202 kb on + strand, within HMPREF1058_RS02800 at 91.204 kb on + strand, within HMPREF1058_RS02800 at 91.338 kb on + strand, within HMPREF1058_RS02800 at 91.338 kb on + strand, within HMPREF1058_RS02800 at 91.365 kb on + strand, within HMPREF1058_RS02800 at 91.365 kb on + strand, within HMPREF1058_RS02800 at 91.369 kb on + strand, within HMPREF1058_RS02800 at 91.416 kb on + strand at 92.248 kb on + strand at 92.248 kb on + strand at 92.248 kb on + strand at 92.251 kb on + strand at 92.256 kb on + strand at 92.256 kb on + strand at 92.256 kb on + strand at 92.257 kb on - strand at 92.257 kb on - strand at 92.264 kb on + strand at 92.279 kb on - strand at 92.378 kb on + strand, within HMPREF1058_RS02790 at 92.378 kb on + strand, within HMPREF1058_RS02790 at 92.378 kb on + strand, within HMPREF1058_RS02790 at 92.379 kb on - strand, within HMPREF1058_RS02790 at 92.379 kb on - strand, within HMPREF1058_RS02790
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day4 remove 90,026 - HMPREF1058_RS02810 0.65 -0.2 90,026 - HMPREF1058_RS02810 0.65 +0.2 90,076 + HMPREF1058_RS02810 0.74 -0.4 90,092 + HMPREF1058_RS02810 0.76 -1.4 90,099 - HMPREF1058_RS02810 0.78 +0.6 90,114 + HMPREF1058_RS02810 0.80 +0.5 90,127 + HMPREF1058_RS02810 0.82 -1.6 90,127 + HMPREF1058_RS02810 0.82 +0.7 90,189 - -2.3 90,202 + -1.2 90,203 - -1.7 90,267 - -0.1 90,348 - +0.4 90,354 - +0.3 90,354 - -0.3 90,370 + +0.3 90,467 - +0.6 90,487 + -1.2 90,753 + -2.2 90,797 - -1.4 90,816 + -0.3 90,847 + +0.6 90,849 + -0.7 90,870 + +0.4 90,962 + HMPREF1058_RS02800 0.15 +0.3 90,999 + HMPREF1058_RS02800 0.21 +1.8 91,001 + HMPREF1058_RS02800 0.21 +2.9 91,001 + HMPREF1058_RS02800 0.21 -0.3 91,001 + HMPREF1058_RS02800 0.21 +1.8 91,029 + HMPREF1058_RS02800 0.26 -2.1 91,202 + HMPREF1058_RS02800 0.55 +1.2 91,202 + HMPREF1058_RS02800 0.55 +1.2 91,202 + HMPREF1058_RS02800 0.55 +1.9 91,202 + HMPREF1058_RS02800 0.55 +1.6 91,204 + HMPREF1058_RS02800 0.55 +1.8 91,338 + HMPREF1058_RS02800 0.78 +0.1 91,338 + HMPREF1058_RS02800 0.78 +2.1 91,365 + HMPREF1058_RS02800 0.82 +1.2 91,365 + HMPREF1058_RS02800 0.82 +1.9 91,369 + HMPREF1058_RS02800 0.83 +2.3 91,416 + +2.3 92,248 + +0.2 92,248 + +0.6 92,248 + +0.3 92,251 + +0.5 92,256 + -1.1 92,256 + -1.3 92,256 + -2.0 92,257 - -0.9 92,257 - -1.6 92,264 + -0.2 92,279 - +0.0 92,378 + HMPREF1058_RS02790 0.19 -0.1 92,378 + HMPREF1058_RS02790 0.19 +0.5 92,378 + HMPREF1058_RS02790 0.19 -1.6 92,379 - HMPREF1058_RS02790 0.19 -0.1 92,379 - HMPREF1058_RS02790 0.19 -0.2
Or see this region's nucleotide sequence