Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse16; day6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS02900 and HMPREF1058_RS02895 are separated by 215 nucleotides HMPREF1058_RS02895 and HMPREF1058_RS02890 are separated by 40 nucleotides HMPREF1058_RS02890 and HMPREF1058_RS02885 are separated by 77 nucleotides HMPREF1058_RS02885 and HMPREF1058_RS02880 overlap by 4 nucleotides
HMPREF1058_RS02900: HMPREF1058_RS02900 - tryptophan--tRNA ligase, at 61,561 to 62,655
_RS02900
HMPREF1058_RS02895: HMPREF1058_RS02895 - tRNA-Val, at 62,871 to 62,945
_RS02895
HMPREF1058_RS02890: HMPREF1058_RS02890 - tRNA-Val, at 62,986 to 63,060
_RS02890
HMPREF1058_RS02885: HMPREF1058_RS02885 - response regulator transcription factor, at 63,138 to 63,782
_RS02885
HMPREF1058_RS02880: HMPREF1058_RS02880 - tRNA 2-thiouridine(34) synthase MnmA, at 63,779 to 64,843
_RS02880
Position (kb) 63
64 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 62.687 kb on - strand at 62.688 kb on + strand at 62.690 kb on + strand at 62.694 kb on - strand at 62.770 kb on - strand at 62.878 kb on + strand at 63.110 kb on + strand at 63.111 kb on - strand at 63.132 kb on - strand at 63.152 kb on - strand at 63.170 kb on + strand at 63.226 kb on + strand, within HMPREF1058_RS02885 at 63.301 kb on - strand, within HMPREF1058_RS02885 at 63.302 kb on + strand, within HMPREF1058_RS02885 at 63.303 kb on - strand, within HMPREF1058_RS02885 at 63.303 kb on - strand, within HMPREF1058_RS02885 at 63.336 kb on - strand, within HMPREF1058_RS02885 at 63.338 kb on - strand, within HMPREF1058_RS02885 at 63.338 kb on - strand, within HMPREF1058_RS02885 at 63.411 kb on - strand, within HMPREF1058_RS02885 at 63.464 kb on - strand, within HMPREF1058_RS02885 at 63.470 kb on - strand, within HMPREF1058_RS02885 at 63.470 kb on - strand, within HMPREF1058_RS02885 at 63.502 kb on + strand, within HMPREF1058_RS02885 at 63.502 kb on + strand, within HMPREF1058_RS02885 at 63.503 kb on - strand, within HMPREF1058_RS02885 at 63.507 kb on + strand, within HMPREF1058_RS02885 at 63.507 kb on + strand, within HMPREF1058_RS02885 at 63.508 kb on - strand, within HMPREF1058_RS02885 at 63.508 kb on - strand, within HMPREF1058_RS02885 at 63.508 kb on - strand, within HMPREF1058_RS02885 at 63.515 kb on + strand, within HMPREF1058_RS02885 at 63.661 kb on + strand, within HMPREF1058_RS02885 at 63.662 kb on - strand, within HMPREF1058_RS02885 at 63.662 kb on - strand, within HMPREF1058_RS02885 at 63.665 kb on + strand, within HMPREF1058_RS02885 at 63.665 kb on + strand, within HMPREF1058_RS02885 at 63.665 kb on + strand, within HMPREF1058_RS02885 at 63.665 kb on + strand, within HMPREF1058_RS02885 at 63.666 kb on - strand, within HMPREF1058_RS02885 at 63.666 kb on - strand, within HMPREF1058_RS02885 at 63.666 kb on - strand, within HMPREF1058_RS02885 at 63.735 kb on + strand at 63.772 kb on - strand at 63.775 kb on - strand at 63.776 kb on + strand at 63.777 kb on - strand at 63.777 kb on - strand at 63.832 kb on - strand at 63.937 kb on + strand, within HMPREF1058_RS02880 at 63.983 kb on + strand, within HMPREF1058_RS02880 at 64.033 kb on - strand, within HMPREF1058_RS02880 at 64.046 kb on - strand, within HMPREF1058_RS02880 at 64.065 kb on + strand, within HMPREF1058_RS02880 at 64.066 kb on - strand, within HMPREF1058_RS02880 at 64.073 kb on - strand, within HMPREF1058_RS02880 at 64.073 kb on - strand, within HMPREF1058_RS02880 at 64.083 kb on - strand, within HMPREF1058_RS02880 at 64.084 kb on + strand, within HMPREF1058_RS02880 at 64.118 kb on + strand, within HMPREF1058_RS02880 at 64.248 kb on + strand, within HMPREF1058_RS02880 at 64.248 kb on + strand, within HMPREF1058_RS02880 at 64.392 kb on - strand, within HMPREF1058_RS02880 at 64.560 kb on - strand, within HMPREF1058_RS02880 at 64.560 kb on - strand, within HMPREF1058_RS02880 at 64.576 kb on + strand, within HMPREF1058_RS02880 at 64.605 kb on + strand, within HMPREF1058_RS02880 at 64.613 kb on + strand, within HMPREF1058_RS02880 at 64.685 kb on - strand, within HMPREF1058_RS02880 at 64.688 kb on + strand, within HMPREF1058_RS02880 at 64.689 kb on - strand, within HMPREF1058_RS02880 at 64.689 kb on - strand, within HMPREF1058_RS02880 at 64.689 kb on - strand, within HMPREF1058_RS02880 at 64.689 kb on - strand, within HMPREF1058_RS02880 at 64.771 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse16; day6 remove 62,687 - -0.5 62,688 + -0.2 62,690 + +0.1 62,694 - +0.5 62,770 - +0.7 62,878 + +0.1 63,110 + +0.8 63,111 - -0.3 63,132 - -2.2 63,152 - -2.1 63,170 + -1.3 63,226 + HMPREF1058_RS02885 0.14 -2.4 63,301 - HMPREF1058_RS02885 0.25 -0.5 63,302 + HMPREF1058_RS02885 0.25 -3.3 63,303 - HMPREF1058_RS02885 0.26 -2.8 63,303 - HMPREF1058_RS02885 0.26 -1.9 63,336 - HMPREF1058_RS02885 0.31 -2.5 63,338 - HMPREF1058_RS02885 0.31 -2.0 63,338 - HMPREF1058_RS02885 0.31 -3.0 63,411 - HMPREF1058_RS02885 0.42 -2.5 63,464 - HMPREF1058_RS02885 0.51 -0.6 63,470 - HMPREF1058_RS02885 0.51 -3.0 63,470 - HMPREF1058_RS02885 0.51 -0.3 63,502 + HMPREF1058_RS02885 0.56 -1.4 63,502 + HMPREF1058_RS02885 0.56 -0.0 63,503 - HMPREF1058_RS02885 0.57 -0.7 63,507 + HMPREF1058_RS02885 0.57 -1.3 63,507 + HMPREF1058_RS02885 0.57 -2.4 63,508 - HMPREF1058_RS02885 0.57 -1.7 63,508 - HMPREF1058_RS02885 0.57 -1.9 63,508 - HMPREF1058_RS02885 0.57 -2.1 63,515 + HMPREF1058_RS02885 0.58 -0.5 63,661 + HMPREF1058_RS02885 0.81 -1.6 63,662 - HMPREF1058_RS02885 0.81 -2.8 63,662 - HMPREF1058_RS02885 0.81 -2.9 63,665 + HMPREF1058_RS02885 0.82 -0.9 63,665 + HMPREF1058_RS02885 0.82 -2.0 63,665 + HMPREF1058_RS02885 0.82 -2.4 63,665 + HMPREF1058_RS02885 0.82 -3.4 63,666 - HMPREF1058_RS02885 0.82 -1.7 63,666 - HMPREF1058_RS02885 0.82 -0.7 63,666 - HMPREF1058_RS02885 0.82 -1.6 63,735 + -1.4 63,772 - -1.2 63,775 - +0.1 63,776 + -0.1 63,777 - -1.2 63,777 - -2.7 63,832 - -1.2 63,937 + HMPREF1058_RS02880 0.15 -4.3 63,983 + HMPREF1058_RS02880 0.19 -2.9 64,033 - HMPREF1058_RS02880 0.24 -1.3 64,046 - HMPREF1058_RS02880 0.25 -2.8 64,065 + HMPREF1058_RS02880 0.27 -4.4 64,066 - HMPREF1058_RS02880 0.27 -4.1 64,073 - HMPREF1058_RS02880 0.28 -0.3 64,073 - HMPREF1058_RS02880 0.28 -2.4 64,083 - HMPREF1058_RS02880 0.29 -3.1 64,084 + HMPREF1058_RS02880 0.29 -3.3 64,118 + HMPREF1058_RS02880 0.32 -3.9 64,248 + HMPREF1058_RS02880 0.44 -4.4 64,248 + HMPREF1058_RS02880 0.44 -2.9 64,392 - HMPREF1058_RS02880 0.58 -0.9 64,560 - HMPREF1058_RS02880 0.73 -1.0 64,560 - HMPREF1058_RS02880 0.73 -4.4 64,576 + HMPREF1058_RS02880 0.75 -3.5 64,605 + HMPREF1058_RS02880 0.78 -3.1 64,613 + HMPREF1058_RS02880 0.78 -3.3 64,685 - HMPREF1058_RS02880 0.85 -2.5 64,688 + HMPREF1058_RS02880 0.85 -1.7 64,689 - HMPREF1058_RS02880 0.85 -3.2 64,689 - HMPREF1058_RS02880 0.85 -3.8 64,689 - HMPREF1058_RS02880 0.85 -3.6 64,689 - HMPREF1058_RS02880 0.85 -2.9 64,771 - -3.4
Or see this region's nucleotide sequence