Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv1707

Experiment: 7H9 with Ofloxacin 0.8 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Ofloxacin 0.8 ug/mL
1,933,926	-				-0.3
1,933,930	+				+1.1
1,933,930	+				-0.7
1,933,934	+				+1.6
1,933,935	-				-0.9
1,933,935	-				-1.2
1,933,935	-				-0.8
1,933,957	-				-0.2
1,933,974	-				-1.4
1,933,974	-				+2.5
1,934,036	-				-1.6
1,934,093	+				-0.1
1,934,168	+				-1.0
1,934,168	+				+1.4
1,934,168	+				-0.3
1,934,168	+				-0.3
1,934,181	-				-0.8
1,934,302	-				-0.1
1,934,371	-				+0.1
1,934,411	-				-0.6
1,934,433	+				-0.7
1,934,433	+				-2.2
1,934,440	+				+0.6
1,934,441	-				-0.7
1,934,651	+				+0.5
1,934,651	+				-0.3
1,934,651	+				+0.6
1,934,651	+				+1.3
1,934,651	+				+1.1
1,934,652	-				+1.1
1,934,652	-				-1.2
1,934,721	+				+0.5
1,934,722	-				+1.0
1,934,770	+				+1.1
1,934,771	-				-0.4
1,934,771	-				+0.2
1,934,865	-				+0.1
1,934,865	-				-0.3
1,934,867	+				-0.4
1,934,867	+				+1.8
1,934,868	-				+0.2
1,934,868	-				-0.0
1,934,868	-				+1.4
1,934,868	-				+2.0
1,934,868	-				+0.1
1,934,868	-				-0.3
1,934,868	-				-0.6
1,934,887	-				-1.7
1,934,965	+				-1.6
1,935,207	-		Rv1707	0.22	-0.9
1,935,465	-		Rv1707	0.40	-1.0
1,935,821	+		Rv1707	0.64	-1.8
1,935,821	+		Rv1707	0.64	-0.5
1,935,822	-		Rv1707	0.64	-0.7
1,935,856	-		Rv1707	0.67	+0.1
1,936,070	+		Rv1707	0.81	-0.2
1,936,071	-		Rv1707	0.81	-1.6
1,936,113	+		Rv1707	0.84	-0.5
1,936,113	+		Rv1707	0.84	-0.5
1,936,113	+		Rv1707	0.84	-3.6
1,936,113	+		Rv1707	0.84	+0.7
1,936,172	+		Rv1707	0.88	+1.1
1,936,205	+				+1.6
1,936,206	-				+2.7
1,936,206	-				-0.4
1,936,206	-				-0.3
1,936,206	-				-0.6
1,936,392	-				+0.2
1,936,452	+				-0.1