Strain Fitness in Fusobacterium nucleatum SB010 around HUW76_00325

Experiment: Time0_glycerolstock

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHUW76_00320 and HUW76_00325 are separated by 19 nucleotidesHUW76_00325 and HUW76_00330 overlap by 4 nucleotides HUW76_00320: HUW76_00320 - RNA-binding transcriptional accessory protein, at 63,049 to 65,217 _00320 HUW76_00325: HUW76_00325 - HAMP domain-containing histidine kinase, at 65,237 to 67,657 _00325 HUW76_00330: HUW76_00330 - isoleucine--tRNA ligase, at 67,654 to 70,455 _00330 Position (kb) 65 66 67 68Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 64.251 kb on + strand, within HUW76_00320at 64.271 kb on - strand, within HUW76_00320at 64.286 kb on + strand, within HUW76_00320at 64.345 kb on + strand, within HUW76_00320at 64.355 kb on + strand, within HUW76_00320at 64.355 kb on + strand, within HUW76_00320at 64.355 kb on + strand, within HUW76_00320at 64.362 kb on - strand, within HUW76_00320at 64.427 kb on + strand, within HUW76_00320at 64.427 kb on + strand, within HUW76_00320at 64.427 kb on + strand, within HUW76_00320at 64.427 kb on + strand, within HUW76_00320at 64.427 kb on + strand, within HUW76_00320at 64.437 kb on - strand, within HUW76_00320at 64.448 kb on + strand, within HUW76_00320at 64.448 kb on + strand, within HUW76_00320at 64.448 kb on + strand, within HUW76_00320at 64.456 kb on - strand, within HUW76_00320at 64.456 kb on - strand, within HUW76_00320at 64.474 kb on + strand, within HUW76_00320at 64.482 kb on - strand, within HUW76_00320at 64.484 kb on + strand, within HUW76_00320at 64.486 kb on + strand, within HUW76_00320at 64.486 kb on + strand, within HUW76_00320at 64.486 kb on + strand, within HUW76_00320at 64.494 kb on - strand, within HUW76_00320at 64.494 kb on - strand, within HUW76_00320at 64.572 kb on + strand, within HUW76_00320at 64.584 kb on + strand, within HUW76_00320at 64.584 kb on + strand, within HUW76_00320at 64.584 kb on + strand, within HUW76_00320at 64.584 kb on + strand, within HUW76_00320at 64.592 kb on - strand, within HUW76_00320at 64.644 kb on + strand, within HUW76_00320at 64.644 kb on + strand, within HUW76_00320at 64.645 kb on + strand, within HUW76_00320at 64.660 kb on - strand, within HUW76_00320at 64.660 kb on - strand, within HUW76_00320at 64.666 kb on + strand, within HUW76_00320at 64.678 kb on + strand, within HUW76_00320at 64.678 kb on + strand, within HUW76_00320at 64.686 kb on + strand, within HUW76_00320at 64.694 kb on - strand, within HUW76_00320at 64.694 kb on - strand, within HUW76_00320at 64.700 kb on - strand, within HUW76_00320at 64.719 kb on + strand, within HUW76_00320at 64.719 kb on + strand, within HUW76_00320at 64.727 kb on + strand, within HUW76_00320at 64.729 kb on + strand, within HUW76_00320at 64.735 kb on - strand, within HUW76_00320at 64.735 kb on - strand, within HUW76_00320at 64.815 kb on - strand, within HUW76_00320at 64.886 kb on + strand, within HUW76_00320at 64.909 kb on + strand, within HUW76_00320at 64.917 kb on + strand, within HUW76_00320at 64.917 kb on + strand, within HUW76_00320at 64.917 kb on + strand, within HUW76_00320at 64.917 kb on + strand, within HUW76_00320at 64.997 kb on + strand, within HUW76_00320at 65.074 kb on + strandat 65.183 kb on - strandat 65.186 kb on + strandat 65.191 kb on + strandat 65.194 kb on - strandat 65.232 kb on + strandat 65.232 kb on + strandat 65.311 kb on + strandat 65.320 kb on - strandat 65.438 kb on + strandat 65.438 kb on + strandat 65.438 kb on + strandat 65.476 kb on - strandat 65.476 kb on - strandat 65.531 kb on + strand, within HUW76_00325at 65.536 kb on + strand, within HUW76_00325at 65.541 kb on + strand, within HUW76_00325at 65.544 kb on - strand, within HUW76_00325at 65.546 kb on + strand, within HUW76_00325at 65.554 kb on - strand, within HUW76_00325at 65.558 kb on - strand, within HUW76_00325at 65.558 kb on - strand, within HUW76_00325at 65.743 kb on + strand, within HUW76_00325at 65.743 kb on + strand, within HUW76_00325at 65.751 kb on - strand, within HUW76_00325at 65.753 kb on - strand, within HUW76_00325at 65.753 kb on - strand, within HUW76_00325at 65.753 kb on - strand, within HUW76_00325at 65.763 kb on - strand, within HUW76_00325at 65.763 kb on - strand, within HUW76_00325at 65.763 kb on - strand, within HUW76_00325at 65.763 kb on - strand, within HUW76_00325at 65.786 kb on - strand, within HUW76_00325at 65.858 kb on + strand, within HUW76_00325at 65.858 kb on - strand, within HUW76_00325at 65.858 kb on - strand, within HUW76_00325at 65.894 kb on + strand, within HUW76_00325at 65.909 kb on - strand, within HUW76_00325at 66.157 kb on + strand, within HUW76_00325at 66.173 kb on - strand, within HUW76_00325at 66.173 kb on - strand, within HUW76_00325at 66.207 kb on - strand, within HUW76_00325at 66.207 kb on - strand, within HUW76_00325at 66.336 kb on - strand, within HUW76_00325at 66.336 kb on - strand, within HUW76_00325at 66.406 kb on + strand, within HUW76_00325at 66.406 kb on + strand, within HUW76_00325at 66.472 kb on - strand, within HUW76_00325at 66.472 kb on - strand, within HUW76_00325at 66.509 kb on + strand, within HUW76_00325at 66.509 kb on + strand, within HUW76_00325at 66.509 kb on + strand, within HUW76_00325at 66.509 kb on + strand, within HUW76_00325at 66.509 kb on + strand, within HUW76_00325at 66.621 kb on + strand, within HUW76_00325at 66.629 kb on - strand, within HUW76_00325at 66.629 kb on - strand, within HUW76_00325at 66.656 kb on + strand, within HUW76_00325at 66.661 kb on + strand, within HUW76_00325at 66.661 kb on + strand, within HUW76_00325at 66.661 kb on + strand, within HUW76_00325at 66.661 kb on + strand, within HUW76_00325at 66.669 kb on - strand, within HUW76_00325at 66.760 kb on - strand, within HUW76_00325at 66.760 kb on - strand, within HUW76_00325at 66.760 kb on - strand, within HUW76_00325at 66.843 kb on - strand, within HUW76_00325at 66.843 kb on - strand, within HUW76_00325at 66.893 kb on + strand, within HUW76_00325at 66.996 kb on + strand, within HUW76_00325at 67.474 kb on + strandat 67.522 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Time0_glycerolstock
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64,251 + HUW76_00320 0.55 +0.2
64,271 - HUW76_00320 0.56 +3.5
64,286 + HUW76_00320 0.57 +0.6
64,345 + HUW76_00320 0.60 -0.1
64,355 + HUW76_00320 0.60 +3.9
64,355 + HUW76_00320 0.60 +0.1
64,355 + HUW76_00320 0.60 +1.5
64,362 - HUW76_00320 0.61 +1.3
64,427 + HUW76_00320 0.64 -0.7
64,427 + HUW76_00320 0.64 -0.6
64,427 + HUW76_00320 0.64 -0.1
64,427 + HUW76_00320 0.64 +0.0
64,427 + HUW76_00320 0.64 -0.1
64,437 - HUW76_00320 0.64 +1.3
64,448 + HUW76_00320 0.64 +0.2
64,448 + HUW76_00320 0.64 -2.1
64,448 + HUW76_00320 0.64 +0.8
64,456 - HUW76_00320 0.65 +3.9
64,456 - HUW76_00320 0.65 +1.3
64,474 + HUW76_00320 0.66 +0.2
64,482 - HUW76_00320 0.66 +1.4
64,484 + HUW76_00320 0.66 -0.8
64,486 + HUW76_00320 0.66 +0.0
64,486 + HUW76_00320 0.66 -1.0
64,486 + HUW76_00320 0.66 +3.2
64,494 - HUW76_00320 0.67 +2.3
64,494 - HUW76_00320 0.67 +0.7
64,572 + HUW76_00320 0.70 +0.1
64,584 + HUW76_00320 0.71 +0.4
64,584 + HUW76_00320 0.71 +1.7
64,584 + HUW76_00320 0.71 +0.6
64,584 + HUW76_00320 0.71 -1.1
64,592 - HUW76_00320 0.71 +2.5
64,644 + HUW76_00320 0.74 -1.7
64,644 + HUW76_00320 0.74 +0.9
64,645 + HUW76_00320 0.74 -0.8
64,660 - HUW76_00320 0.74 +2.9
64,660 - HUW76_00320 0.74 +0.6
64,666 + HUW76_00320 0.75 +1.0
64,678 + HUW76_00320 0.75 -0.0
64,678 + HUW76_00320 0.75 -0.3
64,686 + HUW76_00320 0.75 -0.9
64,694 - HUW76_00320 0.76 +1.3
64,694 - HUW76_00320 0.76 -0.4
64,700 - HUW76_00320 0.76 +3.5
64,719 + HUW76_00320 0.77 +0.3
64,719 + HUW76_00320 0.77 +0.3
64,727 + HUW76_00320 0.77 -1.0
64,729 + HUW76_00320 0.77 -0.4
64,735 - HUW76_00320 0.78 +2.3
64,735 - HUW76_00320 0.78 +3.7
64,815 - HUW76_00320 0.81 +0.3
64,886 + HUW76_00320 0.85 +1.0
64,909 + HUW76_00320 0.86 +0.1
64,917 + HUW76_00320 0.86 +0.0
64,917 + HUW76_00320 0.86 -0.4
64,917 + HUW76_00320 0.86 +3.2
64,917 + HUW76_00320 0.86 +2.5
64,997 + HUW76_00320 0.90 +0.6
65,074 + +0.4
65,183 - +2.6
65,186 + +0.8
65,191 + -1.4
65,194 - +2.6
65,232 + +1.0
65,232 + +1.9
65,311 + +1.3
65,320 - +2.3
65,438 + +3.7
65,438 + +3.0
65,438 + +0.9
65,476 - +1.9
65,476 - +2.5
65,531 + HUW76_00325 0.12 +2.2
65,536 + HUW76_00325 0.12 +3.5
65,541 + HUW76_00325 0.13 +0.7
65,544 - HUW76_00325 0.13 +3.3
65,546 + HUW76_00325 0.13 +1.0
65,554 - HUW76_00325 0.13 +1.0
65,558 - HUW76_00325 0.13 +0.3
65,558 - HUW76_00325 0.13 +1.0
65,743 + HUW76_00325 0.21 +0.7
65,743 + HUW76_00325 0.21 +2.5
65,751 - HUW76_00325 0.21 +2.5
65,753 - HUW76_00325 0.21 +0.8
65,753 - HUW76_00325 0.21 +2.6
65,753 - HUW76_00325 0.21 +0.9
65,763 - HUW76_00325 0.22 +3.2
65,763 - HUW76_00325 0.22 +3.0
65,763 - HUW76_00325 0.22 +3.1
65,763 - HUW76_00325 0.22 +1.9
65,786 - HUW76_00325 0.23 -0.7
65,858 + HUW76_00325 0.26 +3.7
65,858 - HUW76_00325 0.26 +1.9
65,858 - HUW76_00325 0.26 +1.5
65,894 + HUW76_00325 0.27 +1.6
65,909 - HUW76_00325 0.28 +2.1
66,157 + HUW76_00325 0.38 +1.9
66,173 - HUW76_00325 0.39 +2.5
66,173 - HUW76_00325 0.39 +2.7
66,207 - HUW76_00325 0.40 +1.5
66,207 - HUW76_00325 0.40 +2.4
66,336 - HUW76_00325 0.45 +5.0
66,336 - HUW76_00325 0.45 +2.9
66,406 + HUW76_00325 0.48 +2.3
66,406 + HUW76_00325 0.48 +1.9
66,472 - HUW76_00325 0.51 +0.9
66,472 - HUW76_00325 0.51 +1.7
66,509 + HUW76_00325 0.53 +2.9
66,509 + HUW76_00325 0.53 +2.2
66,509 + HUW76_00325 0.53 +2.3
66,509 + HUW76_00325 0.53 +3.7
66,509 + HUW76_00325 0.53 +0.1
66,621 + HUW76_00325 0.57 +1.9
66,629 - HUW76_00325 0.57 +2.9
66,629 - HUW76_00325 0.57 +1.3
66,656 + HUW76_00325 0.59 +1.9
66,661 + HUW76_00325 0.59 +2.9
66,661 + HUW76_00325 0.59 +3.9
66,661 + HUW76_00325 0.59 +4.3
66,661 + HUW76_00325 0.59 +2.9
66,669 - HUW76_00325 0.59 +4.7
66,760 - HUW76_00325 0.63 +1.9
66,760 - HUW76_00325 0.63 +1.7
66,760 - HUW76_00325 0.63 +3.2
66,843 - HUW76_00325 0.66 +3.2
66,843 - HUW76_00325 0.66 +2.4
66,893 + HUW76_00325 0.68 +2.3
66,996 + HUW76_00325 0.73 +2.4
67,474 + +0.3
67,522 + +0.9

Or see this region's nucleotide sequence