Strain Fitness in Fusobacterium nucleatum SB010 around HUW76_00275

Experiment: Time0_glycerolstock

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHUW76_00265 and HUW76_00270 are separated by 55 nucleotidesHUW76_00270 and HUW76_00275 are separated by 84 nucleotidesHUW76_00275 and HUW76_00280 are separated by 16 nucleotides HUW76_00265: HUW76_00265 - cysteine desulfurase NifS, at 53,133 to 54,326 _00265 HUW76_00270: HUW76_00270 - Fe-S cluster assembly scaffold protein NifU, at 54,382 to 54,777 _00270 HUW76_00275: HUW76_00275 - serine hydrolase, at 54,862 to 56,118 _00275 HUW76_00280: HUW76_00280 - carboxypeptidase M32, at 56,135 to 57,625 _00280 Position (kb) 54 55 56 57Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 54.286 kb on + strandat 54.286 kb on + strandat 54.360 kb on + strandat 54.360 kb on + strandat 54.360 kb on + strandat 54.769 kb on + strandat 54.772 kb on + strandat 54.829 kb on - strandat 54.835 kb on - strandat 54.929 kb on + strandat 54.939 kb on + strandat 54.939 kb on + strandat 54.979 kb on + strandat 54.979 kb on + strandat 54.986 kb on - strandat 54.986 kb on - strandat 54.986 kb on - strandat 55.004 kb on + strand, within HUW76_00275at 55.020 kb on - strand, within HUW76_00275at 55.082 kb on + strand, within HUW76_00275at 55.082 kb on + strand, within HUW76_00275at 55.269 kb on - strand, within HUW76_00275at 55.346 kb on + strand, within HUW76_00275at 55.347 kb on + strand, within HUW76_00275at 55.347 kb on + strand, within HUW76_00275at 55.347 kb on + strand, within HUW76_00275at 55.357 kb on + strand, within HUW76_00275at 55.357 kb on + strand, within HUW76_00275at 55.364 kb on - strand, within HUW76_00275at 55.365 kb on - strand, within HUW76_00275at 55.371 kb on - strand, within HUW76_00275at 55.385 kb on - strand, within HUW76_00275at 55.389 kb on - strand, within HUW76_00275at 55.405 kb on + strand, within HUW76_00275at 55.405 kb on + strand, within HUW76_00275at 55.418 kb on - strand, within HUW76_00275at 55.445 kb on + strand, within HUW76_00275at 55.445 kb on + strand, within HUW76_00275at 55.445 kb on + strand, within HUW76_00275at 55.467 kb on + strand, within HUW76_00275at 55.467 kb on + strand, within HUW76_00275at 55.467 kb on + strand, within HUW76_00275at 55.475 kb on - strand, within HUW76_00275at 55.479 kb on + strand, within HUW76_00275at 55.479 kb on + strand, within HUW76_00275at 55.510 kb on + strand, within HUW76_00275at 55.510 kb on + strand, within HUW76_00275at 55.511 kb on + strand, within HUW76_00275at 55.511 kb on + strand, within HUW76_00275at 55.511 kb on + strand, within HUW76_00275at 55.544 kb on - strand, within HUW76_00275at 55.558 kb on + strand, within HUW76_00275at 55.558 kb on + strand, within HUW76_00275at 55.597 kb on + strand, within HUW76_00275at 55.597 kb on + strand, within HUW76_00275at 55.597 kb on + strand, within HUW76_00275at 55.597 kb on + strand, within HUW76_00275at 55.597 kb on + strand, within HUW76_00275at 55.597 kb on + strand, within HUW76_00275at 55.597 kb on + strand, within HUW76_00275at 55.597 kb on + strand, within HUW76_00275at 55.597 kb on + strand, within HUW76_00275at 55.597 kb on + strand, within HUW76_00275at 55.597 kb on + strand, within HUW76_00275at 55.605 kb on - strand, within HUW76_00275at 55.605 kb on - strand, within HUW76_00275at 55.605 kb on - strand, within HUW76_00275at 55.605 kb on - strand, within HUW76_00275at 55.605 kb on - strand, within HUW76_00275at 55.605 kb on - strand, within HUW76_00275at 55.605 kb on - strand, within HUW76_00275at 55.619 kb on - strand, within HUW76_00275at 55.696 kb on + strand, within HUW76_00275at 55.696 kb on + strand, within HUW76_00275at 55.696 kb on + strand, within HUW76_00275at 55.743 kb on + strand, within HUW76_00275at 55.743 kb on + strand, within HUW76_00275at 55.752 kb on + strand, within HUW76_00275at 55.753 kb on - strand, within HUW76_00275at 55.765 kb on + strand, within HUW76_00275at 55.765 kb on + strand, within HUW76_00275at 55.771 kb on + strand, within HUW76_00275at 55.900 kb on + strand, within HUW76_00275at 55.957 kb on + strand, within HUW76_00275at 55.964 kb on + strand, within HUW76_00275at 55.964 kb on + strand, within HUW76_00275at 56.045 kb on + strandat 56.045 kb on + strandat 56.079 kb on + strandat 56.087 kb on - strandat 56.097 kb on - strandat 56.266 kb on + strandat 56.266 kb on + strandat 56.271 kb on + strandat 56.271 kb on + strandat 56.278 kb on + strandat 56.278 kb on + strandat 56.295 kb on + strand, within HUW76_00280at 56.295 kb on + strand, within HUW76_00280at 56.295 kb on - strand, within HUW76_00280at 56.295 kb on - strand, within HUW76_00280at 56.303 kb on - strand, within HUW76_00280at 56.303 kb on - strand, within HUW76_00280at 56.303 kb on - strand, within HUW76_00280at 56.303 kb on - strand, within HUW76_00280at 56.303 kb on - strand, within HUW76_00280at 56.303 kb on - strand, within HUW76_00280at 56.303 kb on - strand, within HUW76_00280at 56.303 kb on - strand, within HUW76_00280at 56.303 kb on - strand, within HUW76_00280at 56.303 kb on - strand, within HUW76_00280at 56.426 kb on + strand, within HUW76_00280at 56.426 kb on + strand, within HUW76_00280at 56.426 kb on + strand, within HUW76_00280at 56.537 kb on + strand, within HUW76_00280at 56.537 kb on + strand, within HUW76_00280at 56.612 kb on + strand, within HUW76_00280at 56.612 kb on + strand, within HUW76_00280at 56.612 kb on + strand, within HUW76_00280at 56.620 kb on - strand, within HUW76_00280at 56.620 kb on - strand, within HUW76_00280at 56.661 kb on + strand, within HUW76_00280at 56.661 kb on + strand, within HUW76_00280at 56.662 kb on + strand, within HUW76_00280at 56.728 kb on + strand, within HUW76_00280at 56.737 kb on - strand, within HUW76_00280at 56.743 kb on + strand, within HUW76_00280at 56.750 kb on + strand, within HUW76_00280at 56.750 kb on + strand, within HUW76_00280at 56.750 kb on + strand, within HUW76_00280at 56.752 kb on + strand, within HUW76_00280at 56.767 kb on + strand, within HUW76_00280at 56.767 kb on + strand, within HUW76_00280at 56.767 kb on + strand, within HUW76_00280at 56.775 kb on - strand, within HUW76_00280at 56.775 kb on - strand, within HUW76_00280at 56.775 kb on - strand, within HUW76_00280at 56.786 kb on + strand, within HUW76_00280at 56.817 kb on + strand, within HUW76_00280at 56.905 kb on + strand, within HUW76_00280at 56.905 kb on + strand, within HUW76_00280at 56.970 kb on + strand, within HUW76_00280at 56.970 kb on + strand, within HUW76_00280at 56.978 kb on - strand, within HUW76_00280at 56.978 kb on - strand, within HUW76_00280at 57.007 kb on - strand, within HUW76_00280at 57.007 kb on - strand, within HUW76_00280at 57.065 kb on + strand, within HUW76_00280at 57.116 kb on - strand, within HUW76_00280

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Time0_glycerolstock
remove
54,286 + -0.3
54,286 + -0.6
54,360 + -0.4
54,360 + -0.0
54,360 + -1.9
54,769 + -0.3
54,772 + -0.1
54,829 - +0.3
54,835 - +0.6
54,929 + +4.3
54,939 + +1.8
54,939 + +2.7
54,979 + +2.2
54,979 + +2.0
54,986 - +3.0
54,986 - +1.4
54,986 - +2.3
55,004 + HUW76_00275 0.11 +2.0
55,020 - HUW76_00275 0.13 +3.0
55,082 + HUW76_00275 0.18 +1.7
55,082 + HUW76_00275 0.18 +2.9
55,269 - HUW76_00275 0.32 +4.2
55,346 + HUW76_00275 0.39 +2.0
55,347 + HUW76_00275 0.39 +2.6
55,347 + HUW76_00275 0.39 +1.6
55,347 + HUW76_00275 0.39 +3.1
55,357 + HUW76_00275 0.39 +2.2
55,357 + HUW76_00275 0.39 +2.9
55,364 - HUW76_00275 0.40 +4.3
55,365 - HUW76_00275 0.40 +2.1
55,371 - HUW76_00275 0.40 +4.5
55,385 - HUW76_00275 0.42 +3.5
55,389 - HUW76_00275 0.42 +3.6
55,405 + HUW76_00275 0.43 +2.7
55,405 + HUW76_00275 0.43 +2.4
55,418 - HUW76_00275 0.44 +2.8
55,445 + HUW76_00275 0.46 +1.8
55,445 + HUW76_00275 0.46 +0.6
55,445 + HUW76_00275 0.46 +2.3
55,467 + HUW76_00275 0.48 +3.2
55,467 + HUW76_00275 0.48 +1.6
55,467 + HUW76_00275 0.48 +2.7
55,475 - HUW76_00275 0.49 +4.2
55,479 + HUW76_00275 0.49 +3.9
55,479 + HUW76_00275 0.49 +2.2
55,510 + HUW76_00275 0.52 +3.9
55,510 + HUW76_00275 0.52 +2.5
55,511 + HUW76_00275 0.52 +2.6
55,511 + HUW76_00275 0.52 +2.0
55,511 + HUW76_00275 0.52 +2.8
55,544 - HUW76_00275 0.54 +2.9
55,558 + HUW76_00275 0.55 +4.3
55,558 + HUW76_00275 0.55 +1.1
55,597 + HUW76_00275 0.58 +2.0
55,597 + HUW76_00275 0.58 +3.8
55,597 + HUW76_00275 0.58 +2.7
55,597 + HUW76_00275 0.58 +2.6
55,597 + HUW76_00275 0.58 +3.0
55,597 + HUW76_00275 0.58 +2.9
55,597 + HUW76_00275 0.58 +3.0
55,597 + HUW76_00275 0.58 +3.4
55,597 + HUW76_00275 0.58 +2.3
55,597 + HUW76_00275 0.58 +2.7
55,597 + HUW76_00275 0.58 +2.8
55,605 - HUW76_00275 0.59 +2.1
55,605 - HUW76_00275 0.59 +2.7
55,605 - HUW76_00275 0.59 +1.7
55,605 - HUW76_00275 0.59 +3.5
55,605 - HUW76_00275 0.59 +3.0
55,605 - HUW76_00275 0.59 +2.1
55,605 - HUW76_00275 0.59 +2.2
55,619 - HUW76_00275 0.60 +3.5
55,696 + HUW76_00275 0.66 +3.3
55,696 + HUW76_00275 0.66 +3.1
55,696 + HUW76_00275 0.66 +2.9
55,743 + HUW76_00275 0.70 +3.4
55,743 + HUW76_00275 0.70 +3.6
55,752 + HUW76_00275 0.71 +2.5
55,753 - HUW76_00275 0.71 +3.9
55,765 + HUW76_00275 0.72 +3.5
55,765 + HUW76_00275 0.72 +2.6
55,771 + HUW76_00275 0.72 +2.2
55,900 + HUW76_00275 0.83 +2.4
55,957 + HUW76_00275 0.87 +3.3
55,964 + HUW76_00275 0.88 +2.7
55,964 + HUW76_00275 0.88 +2.5
56,045 + +3.3
56,045 + +3.7
56,079 + +2.9
56,087 - +2.4
56,097 - +0.6
56,266 + -0.5
56,266 + +1.5
56,271 + +0.3
56,271 + +0.5
56,278 + +0.6
56,278 + -0.4
56,295 + HUW76_00280 0.11 -0.3
56,295 + HUW76_00280 0.11 +0.1
56,295 - HUW76_00280 0.11 +0.5
56,295 - HUW76_00280 0.11 +0.4
56,303 - HUW76_00280 0.11 +0.8
56,303 - HUW76_00280 0.11 +2.1
56,303 - HUW76_00280 0.11 -0.5
56,303 - HUW76_00280 0.11 +0.1
56,303 - HUW76_00280 0.11 +0.5
56,303 - HUW76_00280 0.11 +1.1
56,303 - HUW76_00280 0.11 +0.2
56,303 - HUW76_00280 0.11 +0.2
56,303 - HUW76_00280 0.11 +0.7
56,303 - HUW76_00280 0.11 -0.1
56,426 + HUW76_00280 0.20 -0.2
56,426 + HUW76_00280 0.20 +0.3
56,426 + HUW76_00280 0.20 +0.2
56,537 + HUW76_00280 0.27 +0.2
56,537 + HUW76_00280 0.27 -0.4
56,612 + HUW76_00280 0.32 +0.2
56,612 + HUW76_00280 0.32 -0.3
56,612 + HUW76_00280 0.32 +0.2
56,620 - HUW76_00280 0.33 +1.1
56,620 - HUW76_00280 0.33 -0.4
56,661 + HUW76_00280 0.35 +0.2
56,661 + HUW76_00280 0.35 -0.2
56,662 + HUW76_00280 0.35 -0.2
56,728 + HUW76_00280 0.40 +0.6
56,737 - HUW76_00280 0.40 -0.1
56,743 + HUW76_00280 0.41 -0.1
56,750 + HUW76_00280 0.41 -0.5
56,750 + HUW76_00280 0.41 +0.5
56,750 + HUW76_00280 0.41 -0.2
56,752 + HUW76_00280 0.41 -0.3
56,767 + HUW76_00280 0.42 -0.2
56,767 + HUW76_00280 0.42 +0.1
56,767 + HUW76_00280 0.42 -0.6
56,775 - HUW76_00280 0.43 +1.1
56,775 - HUW76_00280 0.43 +1.2
56,775 - HUW76_00280 0.43 +0.0
56,786 + HUW76_00280 0.44 -0.3
56,817 + HUW76_00280 0.46 -0.1
56,905 + HUW76_00280 0.52 +0.5
56,905 + HUW76_00280 0.52 -0.3
56,970 + HUW76_00280 0.56 -0.1
56,970 + HUW76_00280 0.56 -0.1
56,978 - HUW76_00280 0.57 +1.1
56,978 - HUW76_00280 0.57 +1.5
57,007 - HUW76_00280 0.58 +0.9
57,007 - HUW76_00280 0.58 -0.2
57,065 + HUW76_00280 0.62 +0.2
57,116 - HUW76_00280 0.66 +0.3

Or see this region's nucleotide sequence