Strain Fitness in Fusobacterium nucleatum SB010 around HUW76_04515

Experiment: Time0_glycerolstock

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHUW76_04510 and HUW76_04515 are separated by 32 nucleotidesHUW76_04515 and HUW76_04520 are separated by 1 nucleotidesHUW76_04520 and HUW76_04525 are separated by 161 nucleotides HUW76_04510: HUW76_04510 - YgiQ family radical SAM protein, at 907,193 to 908,893 _04510 HUW76_04515: HUW76_04515 - methyltransferase domain-containing protein, at 908,926 to 909,680 _04515 HUW76_04520: HUW76_04520 - DUF1904 domain-containing protein, at 909,682 to 910,011 _04520 HUW76_04525: HUW76_04525 - homoserine dehydrogenase, at 910,173 to 911,297 _04525 Position (kb) 908 909 910Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 907.962 kb on - strand, within HUW76_04510at 908.001 kb on - strand, within HUW76_04510at 908.001 kb on - strand, within HUW76_04510at 908.018 kb on + strand, within HUW76_04510at 908.018 kb on + strand, within HUW76_04510at 908.026 kb on + strand, within HUW76_04510at 908.026 kb on + strand, within HUW76_04510at 908.026 kb on - strand, within HUW76_04510at 908.026 kb on - strand, within HUW76_04510at 908.026 kb on - strand, within HUW76_04510at 908.034 kb on - strand, within HUW76_04510at 908.055 kb on + strand, within HUW76_04510at 908.065 kb on - strand, within HUW76_04510at 908.065 kb on - strand, within HUW76_04510at 908.065 kb on - strand, within HUW76_04510at 908.065 kb on - strand, within HUW76_04510at 908.067 kb on + strand, within HUW76_04510at 908.067 kb on + strand, within HUW76_04510at 908.075 kb on - strand, within HUW76_04510at 908.075 kb on - strand, within HUW76_04510at 908.087 kb on - strand, within HUW76_04510at 908.095 kb on + strand, within HUW76_04510at 908.098 kb on - strand, within HUW76_04510at 908.098 kb on - strand, within HUW76_04510at 908.103 kb on - strand, within HUW76_04510at 908.103 kb on - strand, within HUW76_04510at 908.108 kb on - strand, within HUW76_04510at 908.135 kb on + strand, within HUW76_04510at 908.147 kb on + strand, within HUW76_04510at 908.148 kb on - strand, within HUW76_04510at 908.169 kb on + strand, within HUW76_04510at 908.169 kb on + strand, within HUW76_04510at 908.169 kb on + strand, within HUW76_04510at 908.169 kb on + strand, within HUW76_04510at 908.186 kb on + strand, within HUW76_04510at 908.186 kb on + strand, within HUW76_04510at 908.186 kb on + strand, within HUW76_04510at 908.194 kb on - strand, within HUW76_04510at 908.194 kb on - strand, within HUW76_04510at 908.231 kb on + strand, within HUW76_04510at 908.231 kb on + strand, within HUW76_04510at 908.260 kb on - strand, within HUW76_04510at 908.260 kb on - strand, within HUW76_04510at 908.301 kb on - strand, within HUW76_04510at 908.301 kb on - strand, within HUW76_04510at 908.320 kb on - strand, within HUW76_04510at 908.361 kb on + strand, within HUW76_04510at 908.361 kb on + strand, within HUW76_04510at 908.388 kb on - strand, within HUW76_04510at 908.451 kb on + strand, within HUW76_04510at 908.452 kb on + strand, within HUW76_04510at 908.452 kb on + strand, within HUW76_04510at 908.452 kb on + strand, within HUW76_04510at 908.452 kb on + strand, within HUW76_04510at 908.452 kb on + strand, within HUW76_04510at 908.452 kb on + strand, within HUW76_04510at 908.460 kb on - strand, within HUW76_04510at 908.507 kb on - strand, within HUW76_04510at 908.507 kb on - strand, within HUW76_04510at 908.517 kb on - strand, within HUW76_04510at 908.517 kb on - strand, within HUW76_04510at 908.663 kb on + strand, within HUW76_04510at 908.663 kb on + strand, within HUW76_04510at 908.703 kb on + strand, within HUW76_04510at 908.703 kb on + strand, within HUW76_04510at 908.733 kb on - strandat 908.733 kb on - strandat 908.740 kb on + strandat 908.740 kb on + strandat 908.783 kb on + strandat 908.785 kb on + strandat 908.786 kb on - strandat 908.793 kb on - strandat 908.803 kb on - strandat 908.878 kb on + strandat 908.905 kb on - strandat 908.905 kb on - strandat 908.968 kb on + strandat 908.968 kb on + strandat 908.975 kb on - strandat 909.070 kb on + strand, within HUW76_04515at 909.081 kb on - strand, within HUW76_04515at 909.200 kb on + strand, within HUW76_04515at 909.233 kb on - strand, within HUW76_04515at 909.233 kb on - strand, within HUW76_04515at 909.308 kb on + strand, within HUW76_04515at 909.348 kb on + strand, within HUW76_04515at 909.375 kb on - strand, within HUW76_04515at 909.387 kb on + strand, within HUW76_04515at 909.473 kb on + strand, within HUW76_04515at 909.479 kb on - strand, within HUW76_04515at 909.481 kb on - strand, within HUW76_04515at 909.481 kb on - strand, within HUW76_04515at 909.481 kb on - strand, within HUW76_04515at 909.491 kb on + strand, within HUW76_04515at 909.585 kb on - strand, within HUW76_04515at 909.585 kb on - strand, within HUW76_04515at 909.717 kb on - strand, within HUW76_04520at 909.746 kb on + strand, within HUW76_04520at 909.828 kb on + strand, within HUW76_04520at 909.837 kb on - strand, within HUW76_04520at 909.837 kb on - strand, within HUW76_04520at 909.894 kb on + strand, within HUW76_04520at 909.894 kb on + strand, within HUW76_04520at 909.894 kb on + strand, within HUW76_04520at 909.894 kb on + strand, within HUW76_04520at 909.894 kb on + strand, within HUW76_04520at 909.902 kb on - strand, within HUW76_04520at 909.902 kb on - strand, within HUW76_04520at 909.902 kb on - strand, within HUW76_04520at 910.073 kb on + strandat 910.203 kb on + strandat 910.203 kb on + strandat 910.210 kb on - strandat 910.210 kb on - strandat 910.210 kb on - strandat 910.215 kb on - strandat 910.215 kb on - strandat 910.215 kb on - strandat 910.215 kb on - strandat 910.215 kb on - strandat 910.341 kb on + strand, within HUW76_04525at 910.341 kb on + strand, within HUW76_04525at 910.344 kb on + strand, within HUW76_04525at 910.349 kb on + strand, within HUW76_04525at 910.349 kb on + strand, within HUW76_04525at 910.349 kb on + strand, within HUW76_04525at 910.349 kb on + strand, within HUW76_04525at 910.349 kb on + strand, within HUW76_04525at 910.349 kb on + strand, within HUW76_04525at 910.357 kb on - strand, within HUW76_04525at 910.357 kb on - strand, within HUW76_04525at 910.359 kb on + strand, within HUW76_04525at 910.359 kb on + strand, within HUW76_04525at 910.359 kb on + strand, within HUW76_04525at 910.360 kb on + strand, within HUW76_04525at 910.361 kb on + strand, within HUW76_04525at 910.361 kb on + strand, within HUW76_04525at 910.361 kb on + strand, within HUW76_04525at 910.361 kb on - strand, within HUW76_04525at 910.361 kb on - strand, within HUW76_04525at 910.367 kb on - strand, within HUW76_04525at 910.368 kb on - strand, within HUW76_04525at 910.516 kb on - strand, within HUW76_04525at 910.517 kb on - strand, within HUW76_04525

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Per-strain Table

Position Strand Gene LocusTag Fraction Time0_glycerolstock
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907,962 - HUW76_04510 0.45 +1.8
908,001 - HUW76_04510 0.48 +0.6
908,001 - HUW76_04510 0.48 -2.4
908,018 + HUW76_04510 0.49 +0.6
908,018 + HUW76_04510 0.49 -0.0
908,026 + HUW76_04510 0.49 -0.5
908,026 + HUW76_04510 0.49 -3.1
908,026 - HUW76_04510 0.49 -0.8
908,026 - HUW76_04510 0.49 +1.1
908,026 - HUW76_04510 0.49 -0.3
908,034 - HUW76_04510 0.49 +0.6
908,055 + HUW76_04510 0.51 -0.8
908,065 - HUW76_04510 0.51 -0.6
908,065 - HUW76_04510 0.51 +0.4
908,065 - HUW76_04510 0.51 -0.6
908,065 - HUW76_04510 0.51 -0.4
908,067 + HUW76_04510 0.51 +0.5
908,067 + HUW76_04510 0.51 -0.8
908,075 - HUW76_04510 0.52 +0.5
908,075 - HUW76_04510 0.52 -0.1
908,087 - HUW76_04510 0.53 -0.5
908,095 + HUW76_04510 0.53 -1.2
908,098 - HUW76_04510 0.53 +0.5
908,098 - HUW76_04510 0.53 +0.7
908,103 - HUW76_04510 0.53 +0.9
908,103 - HUW76_04510 0.53 -0.8
908,108 - HUW76_04510 0.54 +1.0
908,135 + HUW76_04510 0.55 -0.3
908,147 + HUW76_04510 0.56 +0.4
908,148 - HUW76_04510 0.56 +0.2
908,169 + HUW76_04510 0.57 -0.0
908,169 + HUW76_04510 0.57 +0.1
908,169 + HUW76_04510 0.57 +0.2
908,169 + HUW76_04510 0.57 +0.1
908,186 + HUW76_04510 0.58 +0.1
908,186 + HUW76_04510 0.58 -0.3
908,186 + HUW76_04510 0.58 -0.5
908,194 - HUW76_04510 0.59 -0.2
908,194 - HUW76_04510 0.59 +0.5
908,231 + HUW76_04510 0.61 -1.7
908,231 + HUW76_04510 0.61 -0.1
908,260 - HUW76_04510 0.63 -0.8
908,260 - HUW76_04510 0.63 -0.3
908,301 - HUW76_04510 0.65 +0.0
908,301 - HUW76_04510 0.65 +1.9
908,320 - HUW76_04510 0.66 +1.0
908,361 + HUW76_04510 0.69 -0.3
908,361 + HUW76_04510 0.69 -0.5
908,388 - HUW76_04510 0.70 +0.7
908,451 + HUW76_04510 0.74 +0.1
908,452 + HUW76_04510 0.74 +0.2
908,452 + HUW76_04510 0.74 +0.4
908,452 + HUW76_04510 0.74 +0.3
908,452 + HUW76_04510 0.74 -0.7
908,452 + HUW76_04510 0.74 -0.3
908,452 + HUW76_04510 0.74 -0.1
908,460 - HUW76_04510 0.74 +1.4
908,507 - HUW76_04510 0.77 +0.9
908,507 - HUW76_04510 0.77 +0.8
908,517 - HUW76_04510 0.78 +0.2
908,517 - HUW76_04510 0.78 -0.2
908,663 + HUW76_04510 0.86 -1.0
908,663 + HUW76_04510 0.86 -0.9
908,703 + HUW76_04510 0.89 -0.0
908,703 + HUW76_04510 0.89 -0.1
908,733 - +0.8
908,733 - -0.3
908,740 + +0.1
908,740 + -0.1
908,783 + -0.3
908,785 + +0.2
908,786 - -0.6
908,793 - +0.8
908,803 - -0.2
908,878 + -0.3
908,905 - -0.9
908,905 - +1.0
908,968 + -1.4
908,968 + -0.8
908,975 - -0.1
909,070 + HUW76_04515 0.19 +0.2
909,081 - HUW76_04515 0.21 -0.2
909,200 + HUW76_04515 0.36 +0.1
909,233 - HUW76_04515 0.41 -0.8
909,233 - HUW76_04515 0.41 -0.2
909,308 + HUW76_04515 0.51 -0.0
909,348 + HUW76_04515 0.56 -0.3
909,375 - HUW76_04515 0.59 -0.8
909,387 + HUW76_04515 0.61 -0.0
909,473 + HUW76_04515 0.72 -0.5
909,479 - HUW76_04515 0.73 -0.1
909,481 - HUW76_04515 0.74 -0.5
909,481 - HUW76_04515 0.74 -0.4
909,481 - HUW76_04515 0.74 -0.5
909,491 + HUW76_04515 0.75 -0.0
909,585 - HUW76_04515 0.87 -0.5
909,585 - HUW76_04515 0.87 -0.5
909,717 - HUW76_04520 0.11 -0.6
909,746 + HUW76_04520 0.19 +2.8
909,828 + HUW76_04520 0.44 -0.3
909,837 - HUW76_04520 0.47 -0.5
909,837 - HUW76_04520 0.47 +0.2
909,894 + HUW76_04520 0.64 -0.2
909,894 + HUW76_04520 0.64 -0.3
909,894 + HUW76_04520 0.64 +0.7
909,894 + HUW76_04520 0.64 -0.9
909,894 + HUW76_04520 0.64 -0.7
909,902 - HUW76_04520 0.67 -0.5
909,902 - HUW76_04520 0.67 +0.1
909,902 - HUW76_04520 0.67 -0.2
910,073 + +0.2
910,203 + +0.8
910,203 + -0.0
910,210 - -1.4
910,210 - -0.0
910,210 - -0.4
910,215 - +0.1
910,215 - -0.3
910,215 - +0.6
910,215 - -1.0
910,215 - -0.4
910,341 + HUW76_04525 0.15 +0.5
910,341 + HUW76_04525 0.15 -0.2
910,344 + HUW76_04525 0.15 -0.2
910,349 + HUW76_04525 0.16 -1.0
910,349 + HUW76_04525 0.16 +0.0
910,349 + HUW76_04525 0.16 -0.6
910,349 + HUW76_04525 0.16 +0.5
910,349 + HUW76_04525 0.16 -0.1
910,349 + HUW76_04525 0.16 -0.3
910,357 - HUW76_04525 0.16 -0.6
910,357 - HUW76_04525 0.16 -0.5
910,359 + HUW76_04525 0.17 -2.6
910,359 + HUW76_04525 0.17 -0.4
910,359 + HUW76_04525 0.17 -0.0
910,360 + HUW76_04525 0.17 +0.2
910,361 + HUW76_04525 0.17 +0.6
910,361 + HUW76_04525 0.17 -1.3
910,361 + HUW76_04525 0.17 -0.4
910,361 - HUW76_04525 0.17 +0.4
910,361 - HUW76_04525 0.17 +2.4
910,367 - HUW76_04525 0.17 +1.0
910,368 - HUW76_04525 0.17 +0.0
910,516 - HUW76_04525 0.30 +0.6
910,517 - HUW76_04525 0.31 +2.6

Or see this region's nucleotide sequence