Experiment: Time0_glycerolstock
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HUW76_04050 and HUW76_04055 are separated by 1 nucleotides HUW76_04055 and HUW76_04060 are separated by 9 nucleotides HUW76_04060 and HUW76_04065 are separated by 15 nucleotides
HUW76_04050: HUW76_04050 - glycosyltransferase, at 814,810 to 815,541
_04050
HUW76_04055: HUW76_04055 - lipopolysaccharide biosynthesis protein, at 815,543 to 816,265
_04055
HUW76_04060: HUW76_04060 - hypothetical protein, at 816,275 to 816,919
_04060
HUW76_04065: HUW76_04065 - O-antigen ligase family protein, at 816,935 to 818,131
_04065
Position (kb) 816
817 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 815.364 kb on + strand, within HUW76_04050 at 815.387 kb on + strand, within HUW76_04050 at 815.392 kb on + strand, within HUW76_04050 at 815.452 kb on + strand, within HUW76_04050 at 815.452 kb on + strand, within HUW76_04050 at 815.452 kb on + strand, within HUW76_04050 at 815.920 kb on + strand, within HUW76_04055 at 815.920 kb on + strand, within HUW76_04055 at 815.920 kb on + strand, within HUW76_04055 at 815.920 kb on + strand, within HUW76_04055 at 815.920 kb on + strand, within HUW76_04055 at 815.920 kb on + strand, within HUW76_04055 at 815.920 kb on + strand, within HUW76_04055 at 815.920 kb on + strand, within HUW76_04055 at 815.944 kb on + strand, within HUW76_04055 at 815.989 kb on + strand, within HUW76_04055 at 815.989 kb on + strand, within HUW76_04055 at 816.115 kb on + strand, within HUW76_04055 at 816.115 kb on + strand, within HUW76_04055 at 816.115 kb on + strand, within HUW76_04055 at 816.136 kb on + strand, within HUW76_04055 at 816.244 kb on + strand at 816.244 kb on + strand at 816.298 kb on + strand at 816.459 kb on + strand, within HUW76_04060 at 816.459 kb on + strand, within HUW76_04060 at 816.461 kb on + strand, within HUW76_04060 at 816.461 kb on + strand, within HUW76_04060 at 816.583 kb on + strand, within HUW76_04060 at 816.700 kb on + strand, within HUW76_04060 at 816.700 kb on + strand, within HUW76_04060 at 816.710 kb on + strand, within HUW76_04060 at 816.710 kb on + strand, within HUW76_04060 at 816.841 kb on + strand, within HUW76_04060 at 816.846 kb on + strand, within HUW76_04060 at 816.880 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Time0_glycerolstock remove 815,364 + HUW76_04050 0.76 +1.6 815,387 + HUW76_04050 0.79 +1.5 815,392 + HUW76_04050 0.80 +2.2 815,452 + HUW76_04050 0.88 +0.6 815,452 + HUW76_04050 0.88 +2.4 815,452 + HUW76_04050 0.88 +2.1 815,920 + HUW76_04055 0.52 +1.8 815,920 + HUW76_04055 0.52 +2.0 815,920 + HUW76_04055 0.52 +1.6 815,920 + HUW76_04055 0.52 +1.7 815,920 + HUW76_04055 0.52 +0.9 815,920 + HUW76_04055 0.52 +1.8 815,920 + HUW76_04055 0.52 +1.9 815,920 + HUW76_04055 0.52 +1.4 815,944 + HUW76_04055 0.55 +2.5 815,989 + HUW76_04055 0.62 +1.7 815,989 + HUW76_04055 0.62 +2.2 816,115 + HUW76_04055 0.79 +0.8 816,115 + HUW76_04055 0.79 +2.3 816,115 + HUW76_04055 0.79 +2.1 816,136 + HUW76_04055 0.82 +1.7 816,244 + +3.0 816,244 + +1.3 816,298 + +0.0 816,459 + HUW76_04060 0.29 +0.5 816,459 + HUW76_04060 0.29 -1.0 816,461 + HUW76_04060 0.29 -0.6 816,461 + HUW76_04060 0.29 +0.7 816,583 + HUW76_04060 0.48 -1.0 816,700 + HUW76_04060 0.66 -0.1 816,700 + HUW76_04060 0.66 -0.4 816,710 + HUW76_04060 0.67 -0.2 816,710 + HUW76_04060 0.67 -1.2 816,841 + HUW76_04060 0.88 -2.1 816,846 + HUW76_04060 0.89 -0.2 816,880 + -0.2
Or see this region's nucleotide sequence