Experiment: 7H9 with Levofloxacin 0.3 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv1088 and Rv1089 overlap by 179 nucleotides Rv1089 and Rv1089A are separated by 385 nucleotides Rv1089A and Rv1090 overlap by 23 nucleotides Rv1090 and Rv1091 are separated by 414 nucleotides
Rv1088: Rv1088 - PE family protein PE9, at 1,214,513 to 1,214,947
Rv1088
Rv1089: Rv1089 - PE family protein PE10, at 1,214,769 to 1,215,131
Rv1089
Rv1089A: Rv1089A - Probable cellulase CelA2a (endo-1,4-beta-glucanase) (endoglucanase) (carboxymethyl cellulase), at 1,215,517 to 1,215,621
Rv1089A
Rv1090: Rv1090 - Probable cellulase CelA2b (endo-1,4-beta-glucanase) (endoglucanase) (carboxymethyl cellulase), at 1,215,599 to 1,216,054
Rv1090
Rv1091: Rv1091 - PE-PGRS family protein PE_PGRS22, at 1,216,469 to 1,219,030
Rv1091
Position (kb)
1215
1216
1217 Strain fitness (log2 ratio)
-1
0
1
2
3
4
5 at 1214.696 kb on + strand, within Rv1088 at 1214.696 kb on + strand, within Rv1088 at 1214.696 kb on + strand, within Rv1088 at 1214.696 kb on + strand, within Rv1088 at 1214.696 kb on + strand, within Rv1088 at 1215.066 kb on + strand, within Rv1089 at 1215.188 kb on - strand at 1215.209 kb on + strand at 1215.210 kb on - strand at 1215.210 kb on - strand at 1215.210 kb on - strand at 1215.210 kb on - strand at 1215.405 kb on + strand at 1215.406 kb on - strand at 1215.419 kb on + strand at 1215.435 kb on + strand at 1215.435 kb on + strand at 1215.436 kb on - strand at 1215.659 kb on + strand, within Rv1090 at 1215.659 kb on + strand, within Rv1090 at 1215.660 kb on - strand, within Rv1090 at 1215.665 kb on + strand, within Rv1090 at 1215.665 kb on + strand, within Rv1090 at 1215.666 kb on - strand, within Rv1090 at 1215.666 kb on - strand, within Rv1090 at 1215.681 kb on + strand, within Rv1090 at 1215.682 kb on - strand, within Rv1090 at 1215.695 kb on + strand, within Rv1090 at 1215.695 kb on + strand, within Rv1090 at 1215.696 kb on - strand, within Rv1090 at 1215.696 kb on - strand, within Rv1090 at 1215.875 kb on + strand, within Rv1090 at 1215.875 kb on + strand, within Rv1090 at 1215.876 kb on - strand, within Rv1090 at 1215.876 kb on - strand, within Rv1090 at 1215.876 kb on - strand, within Rv1090 at 1215.876 kb on - strand, within Rv1090 at 1216.052 kb on + strand at 1216.053 kb on - strand at 1216.103 kb on + strand at 1216.104 kb on - strand at 1216.346 kb on + strand at 1216.346 kb on + strand at 1216.347 kb on - strand at 1216.347 kb on - strand at 1216.414 kb on + strand at 1216.415 kb on - strand at 1216.463 kb on + strand at 1216.652 kb on + strand at 1216.652 kb on + strand at 1216.652 kb on + strand at 1216.653 kb on - strand at 1216.653 kb on - strand at 1216.727 kb on + strand, within Rv1091 at 1216.728 kb on - strand, within Rv1091 at 1216.890 kb on - strand, within Rv1091 at 1216.918 kb on + strand, within Rv1091 at 1216.918 kb on + strand, within Rv1091 at 1216.918 kb on + strand, within Rv1091 at 1216.919 kb on - strand, within Rv1091 at 1217.039 kb on + strand, within Rv1091
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Levofloxacin 0.3 ug/mL remove 1,214,696 + Rv1088 0.42 +0.4 1,214,696 + Rv1088 0.42 +0.3 1,214,696 + Rv1088 0.42 +0.6 1,214,696 + Rv1088 0.42 +0.9 1,214,696 + Rv1088 0.42 +0.3 1,215,066 + Rv1089 0.82 +0.9 1,215,188 - +1.7 1,215,209 + +1.0 1,215,210 - -0.7 1,215,210 - +0.7 1,215,210 - +1.0 1,215,210 - +0.8 1,215,405 + +1.6 1,215,406 - +0.9 1,215,419 + +2.3 1,215,435 + +1.6 1,215,435 + +1.3 1,215,436 - +3.3 1,215,659 + Rv1090 0.13 +0.7 1,215,659 + Rv1090 0.13 +1.1 1,215,660 - Rv1090 0.13 +1.6 1,215,665 + Rv1090 0.14 +2.1 1,215,665 + Rv1090 0.14 +1.2 1,215,666 - Rv1090 0.15 +1.7 1,215,666 - Rv1090 0.15 +1.4 1,215,681 + Rv1090 0.18 +2.3 1,215,682 - Rv1090 0.18 +1.2 1,215,695 + Rv1090 0.21 +1.9 1,215,695 + Rv1090 0.21 +2.3 1,215,696 - Rv1090 0.21 +4.3 1,215,696 - Rv1090 0.21 +2.3 1,215,875 + Rv1090 0.61 +0.3 1,215,875 + Rv1090 0.61 +0.8 1,215,876 - Rv1090 0.61 +1.3 1,215,876 - Rv1090 0.61 +1.1 1,215,876 - Rv1090 0.61 +1.9 1,215,876 - Rv1090 0.61 +0.8 1,216,052 + +3.3 1,216,053 - +1.5 1,216,103 + +2.7 1,216,104 - +2.3 1,216,346 + +1.6 1,216,346 + +2.1 1,216,347 - +0.2 1,216,347 - +0.3 1,216,414 + +1.7 1,216,415 - +5.5 1,216,463 + +1.8 1,216,652 + +1.6 1,216,652 + +2.6 1,216,652 + +1.8 1,216,653 - +3.9 1,216,653 - +0.9 1,216,727 + Rv1091 0.10 +1.6 1,216,728 - Rv1091 0.10 +1.1 1,216,890 - Rv1091 0.16 -0.5 1,216,918 + Rv1091 0.18 +2.3 1,216,918 + Rv1091 0.18 +0.1 1,216,918 + Rv1091 0.18 +1.3 1,216,919 - Rv1091 0.18 +1.1 1,217,039 + Rv1091 0.22 +1.2
Or see this region's nucleotide sequence