Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv1090

Experiment: 7H9 with Levofloxacin 0.3 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRv1088 and Rv1089 overlap by 179 nucleotidesRv1089 and Rv1089A are separated by 385 nucleotidesRv1089A and Rv1090 overlap by 23 nucleotidesRv1090 and Rv1091 are separated by 414 nucleotides Rv1088: Rv1088 - PE family protein PE9, at 1,214,513 to 1,214,947 Rv1088 Rv1089: Rv1089 - PE family protein PE10, at 1,214,769 to 1,215,131 Rv1089 Rv1089A: Rv1089A - Probable cellulase CelA2a (endo-1,4-beta-glucanase) (endoglucanase) (carboxymethyl cellulase), at 1,215,517 to 1,215,621 Rv1089A Rv1090: Rv1090 - Probable cellulase CelA2b (endo-1,4-beta-glucanase) (endoglucanase) (carboxymethyl cellulase), at 1,215,599 to 1,216,054 Rv1090 Rv1091: Rv1091 - PE-PGRS family protein PE_PGRS22, at 1,216,469 to 1,219,030 Rv1091 Position (kb) 1215 1216 1217Strain fitness (log2 ratio) -1 0 1 2 3 4 5at 1214.696 kb on + strand, within Rv1088at 1214.696 kb on + strand, within Rv1088at 1214.696 kb on + strand, within Rv1088at 1214.696 kb on + strand, within Rv1088at 1214.696 kb on + strand, within Rv1088at 1215.066 kb on + strand, within Rv1089at 1215.188 kb on - strandat 1215.209 kb on + strandat 1215.210 kb on - strandat 1215.210 kb on - strandat 1215.210 kb on - strandat 1215.210 kb on - strandat 1215.405 kb on + strandat 1215.406 kb on - strandat 1215.419 kb on + strandat 1215.435 kb on + strandat 1215.435 kb on + strandat 1215.436 kb on - strandat 1215.659 kb on + strand, within Rv1090at 1215.659 kb on + strand, within Rv1090at 1215.660 kb on - strand, within Rv1090at 1215.665 kb on + strand, within Rv1090at 1215.665 kb on + strand, within Rv1090at 1215.666 kb on - strand, within Rv1090at 1215.666 kb on - strand, within Rv1090at 1215.681 kb on + strand, within Rv1090at 1215.682 kb on - strand, within Rv1090at 1215.695 kb on + strand, within Rv1090at 1215.695 kb on + strand, within Rv1090at 1215.696 kb on - strand, within Rv1090at 1215.696 kb on - strand, within Rv1090at 1215.875 kb on + strand, within Rv1090at 1215.875 kb on + strand, within Rv1090at 1215.876 kb on - strand, within Rv1090at 1215.876 kb on - strand, within Rv1090at 1215.876 kb on - strand, within Rv1090at 1215.876 kb on - strand, within Rv1090at 1216.052 kb on + strandat 1216.053 kb on - strandat 1216.103 kb on + strandat 1216.104 kb on - strandat 1216.346 kb on + strandat 1216.346 kb on + strandat 1216.347 kb on - strandat 1216.347 kb on - strandat 1216.414 kb on + strandat 1216.415 kb on - strandat 1216.463 kb on + strandat 1216.652 kb on + strandat 1216.652 kb on + strandat 1216.652 kb on + strandat 1216.653 kb on - strandat 1216.653 kb on - strandat 1216.727 kb on + strand, within Rv1091at 1216.728 kb on - strand, within Rv1091at 1216.890 kb on - strand, within Rv1091at 1216.918 kb on + strand, within Rv1091at 1216.918 kb on + strand, within Rv1091at 1216.918 kb on + strand, within Rv1091at 1216.919 kb on - strand, within Rv1091at 1217.039 kb on + strand, within Rv1091

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Per-strain Table

Position Strand Gene LocusTag Fraction 7H9 with Levofloxacin 0.3 ug/mL
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1,214,696 + Rv1088 0.42 +0.4
1,214,696 + Rv1088 0.42 +0.3
1,214,696 + Rv1088 0.42 +0.6
1,214,696 + Rv1088 0.42 +0.9
1,214,696 + Rv1088 0.42 +0.3
1,215,066 + Rv1089 0.82 +0.9
1,215,188 - +1.7
1,215,209 + +1.0
1,215,210 - -0.7
1,215,210 - +0.7
1,215,210 - +1.0
1,215,210 - +0.8
1,215,405 + +1.6
1,215,406 - +0.9
1,215,419 + +2.3
1,215,435 + +1.6
1,215,435 + +1.3
1,215,436 - +3.3
1,215,659 + Rv1090 0.13 +0.7
1,215,659 + Rv1090 0.13 +1.1
1,215,660 - Rv1090 0.13 +1.6
1,215,665 + Rv1090 0.14 +2.1
1,215,665 + Rv1090 0.14 +1.2
1,215,666 - Rv1090 0.15 +1.7
1,215,666 - Rv1090 0.15 +1.4
1,215,681 + Rv1090 0.18 +2.3
1,215,682 - Rv1090 0.18 +1.2
1,215,695 + Rv1090 0.21 +1.9
1,215,695 + Rv1090 0.21 +2.3
1,215,696 - Rv1090 0.21 +4.3
1,215,696 - Rv1090 0.21 +2.3
1,215,875 + Rv1090 0.61 +0.3
1,215,875 + Rv1090 0.61 +0.8
1,215,876 - Rv1090 0.61 +1.3
1,215,876 - Rv1090 0.61 +1.1
1,215,876 - Rv1090 0.61 +1.9
1,215,876 - Rv1090 0.61 +0.8
1,216,052 + +3.3
1,216,053 - +1.5
1,216,103 + +2.7
1,216,104 - +2.3
1,216,346 + +1.6
1,216,346 + +2.1
1,216,347 - +0.2
1,216,347 - +0.3
1,216,414 + +1.7
1,216,415 - +5.5
1,216,463 + +1.8
1,216,652 + +1.6
1,216,652 + +2.6
1,216,652 + +1.8
1,216,653 - +3.9
1,216,653 - +0.9
1,216,727 + Rv1091 0.10 +1.6
1,216,728 - Rv1091 0.10 +1.1
1,216,890 - Rv1091 0.16 -0.5
1,216,918 + Rv1091 0.18 +2.3
1,216,918 + Rv1091 0.18 +0.1
1,216,918 + Rv1091 0.18 +1.3
1,216,919 - Rv1091 0.18 +1.1
1,217,039 + Rv1091 0.22 +1.2

Or see this region's nucleotide sequence