Experiment: 7H9 with Levofloxacin 0.3 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0580c and Rv0581 are separated by 93 nucleotides Rv0581 and Rv0582 overlap by 4 nucleotides Rv0582 and Rv0583c are separated by 59 nucleotides Rv0583c and Rv0584 are separated by 153 nucleotides
Rv0580c: Rv0580c - Conserved protein, at 677,125 to 677,616
Rv0580c
Rv0581: Rv0581 - Possible antitoxin VapB26, at 677,710 to 677,925
Rv0581
Rv0582: Rv0582 - Possible toxin VapC26. Contains PIN domain., at 677,922 to 678,329
Rv0582
Rv0583c: Rv0583c - Probable conserved lipoprotein LpqN, at 678,389 to 679,075
Rv0583c
Rv0584: Rv0584 - Possible conserved exported protein, at 679,229 to 681,862
Rv0584
Position (kb) 678
679
680 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 677.627 kb on + strand at 677.680 kb on - strand at 677.859 kb on - strand, within Rv0581 at 677.859 kb on - strand, within Rv0581 at 677.861 kb on - strand, within Rv0581 at 678.555 kb on + strand, within Rv0583c at 678.555 kb on + strand, within Rv0583c at 678.766 kb on - strand, within Rv0583c at 678.885 kb on + strand, within Rv0583c at 678.886 kb on - strand, within Rv0583c at 678.900 kb on + strand, within Rv0583c at 678.901 kb on - strand, within Rv0583c at 678.940 kb on + strand, within Rv0583c at 678.941 kb on - strand, within Rv0583c at 679.210 kb on + strand at 679.218 kb on - strand at 679.319 kb on + strand at 679.479 kb on - strand at 679.487 kb on + strand at 679.488 kb on - strand at 679.488 kb on - strand at 679.494 kb on - strand, within Rv0584 at 679.658 kb on + strand, within Rv0584 at 679.659 kb on - strand, within Rv0584 at 679.662 kb on - strand, within Rv0584 at 679.662 kb on - strand, within Rv0584 at 679.669 kb on - strand, within Rv0584 at 679.802 kb on + strand, within Rv0584 at 679.803 kb on - strand, within Rv0584 at 679.803 kb on - strand, within Rv0584 at 679.803 kb on - strand, within Rv0584 at 679.886 kb on + strand, within Rv0584 at 679.931 kb on + strand, within Rv0584 at 680.051 kb on + strand, within Rv0584 at 680.051 kb on + strand, within Rv0584 at 680.051 kb on + strand, within Rv0584 at 680.052 kb on - strand, within Rv0584
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Levofloxacin 0.3 ug/mL remove 677,627 + +0.4 677,680 - -0.1 677,859 - Rv0581 0.69 -0.3 677,859 - Rv0581 0.69 -0.6 677,861 - Rv0581 0.70 +1.0 678,555 + Rv0583c 0.24 +0.9 678,555 + Rv0583c 0.24 +0.1 678,766 - Rv0583c 0.55 +2.0 678,885 + Rv0583c 0.72 +4.0 678,886 - Rv0583c 0.72 +0.8 678,900 + Rv0583c 0.74 +0.3 678,901 - Rv0583c 0.75 -0.9 678,940 + Rv0583c 0.80 +0.0 678,941 - Rv0583c 0.80 +2.0 679,210 + -1.3 679,218 - +0.1 679,319 + +1.0 679,479 - +1.6 679,487 + +0.3 679,488 - -0.6 679,488 - -0.2 679,494 - Rv0584 0.10 -1.1 679,658 + Rv0584 0.16 +0.3 679,659 - Rv0584 0.16 -0.7 679,662 - Rv0584 0.16 +0.3 679,662 - Rv0584 0.16 +0.4 679,669 - Rv0584 0.17 -0.1 679,802 + Rv0584 0.22 +0.1 679,803 - Rv0584 0.22 +0.8 679,803 - Rv0584 0.22 -1.7 679,803 - Rv0584 0.22 -0.4 679,886 + Rv0584 0.25 -2.1 679,931 + Rv0584 0.27 +1.0 680,051 + Rv0584 0.31 +1.3 680,051 + Rv0584 0.31 +0.9 680,051 + Rv0584 0.31 +0.1 680,052 - Rv0584 0.31 -0.1
Or see this region's nucleotide sequence