Experiment: Control_ECRC98_WM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ydjY and ydjX are separated by 4 nucleotides ydjX and xthA are separated by 166 nucleotides xthA and astC are separated by 445 nucleotides
JDDGAC_01465: ydjY - Uncharacterized protein YdjY, at 254,934 to 255,611
ydjY
JDDGAC_01470: ydjX - TVP38/TMEM64 family membrane protein YdjX, at 255,616 to 256,326
ydjX
JDDGAC_01475: xthA - exodeoxyribonuclease III, at 256,493 to 257,299
xthA
JDDGAC_01480: astC - succinylornithine/acetylornithine transaminase, at 257,745 to 258,965
astC
Position (kb) 256
257
258 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 255.496 kb on + strand, within ydjY at 255.598 kb on + strand at 255.617 kb on + strand at 255.617 kb on + strand at 255.639 kb on + strand at 255.690 kb on - strand, within ydjX at 255.750 kb on + strand, within ydjX at 255.801 kb on - strand, within ydjX at 255.804 kb on + strand, within ydjX at 255.804 kb on + strand, within ydjX at 255.913 kb on + strand, within ydjX at 256.079 kb on - strand, within ydjX at 256.173 kb on + strand, within ydjX at 256.173 kb on + strand, within ydjX at 256.174 kb on - strand, within ydjX at 256.175 kb on + strand, within ydjX at 256.340 kb on - strand at 256.353 kb on + strand at 256.393 kb on + strand at 256.424 kb on - strand at 256.847 kb on - strand, within xthA at 257.027 kb on - strand, within xthA at 257.180 kb on - strand, within xthA at 257.282 kb on - strand at 257.314 kb on - strand at 257.572 kb on - strand at 257.603 kb on - strand at 257.604 kb on + strand at 257.605 kb on - strand at 257.745 kb on - strand at 257.760 kb on - strand at 257.760 kb on - strand at 257.760 kb on - strand at 257.788 kb on + strand at 257.788 kb on + strand at 257.789 kb on - strand at 257.796 kb on + strand at 257.821 kb on + strand at 257.866 kb on - strand at 258.050 kb on + strand, within astC at 258.125 kb on + strand, within astC at 258.252 kb on + strand, within astC at 258.255 kb on - strand, within astC at 258.261 kb on - strand, within astC at 258.263 kb on + strand, within astC at 258.264 kb on - strand, within astC at 258.264 kb on - strand, within astC
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC98_WM remove 255,496 + ydjY JDDGAC_01465 0.83 -1.0 255,598 + +0.4 255,617 + -0.4 255,617 + -0.3 255,639 + -1.5 255,690 - ydjX JDDGAC_01470 0.10 -2.5 255,750 + ydjX JDDGAC_01470 0.19 -0.0 255,801 - ydjX JDDGAC_01470 0.26 +0.2 255,804 + ydjX JDDGAC_01470 0.26 -0.5 255,804 + ydjX JDDGAC_01470 0.26 +1.9 255,913 + ydjX JDDGAC_01470 0.42 -3.2 256,079 - ydjX JDDGAC_01470 0.65 +1.0 256,173 + ydjX JDDGAC_01470 0.78 +0.2 256,173 + ydjX JDDGAC_01470 0.78 -1.9 256,174 - ydjX JDDGAC_01470 0.78 +0.7 256,175 + ydjX JDDGAC_01470 0.79 -3.0 256,340 - +1.3 256,353 + -1.5 256,393 + -0.6 256,424 - -1.3 256,847 - xthA JDDGAC_01475 0.44 -3.1 257,027 - xthA JDDGAC_01475 0.66 -1.0 257,180 - xthA JDDGAC_01475 0.85 -1.1 257,282 - -0.7 257,314 - -0.9 257,572 - +0.6 257,603 - +0.8 257,604 + -1.5 257,605 - -0.4 257,745 - -1.0 257,760 - +1.4 257,760 - -1.9 257,760 - +0.5 257,788 + +0.5 257,788 + +0.3 257,789 - -1.7 257,796 + -2.1 257,821 + -0.1 257,866 - -1.8 258,050 + astC JDDGAC_01480 0.25 -1.5 258,125 + astC JDDGAC_01480 0.31 +0.3 258,252 + astC JDDGAC_01480 0.42 -0.2 258,255 - astC JDDGAC_01480 0.42 -1.4 258,261 - astC JDDGAC_01480 0.42 +1.6 258,263 + astC JDDGAC_01480 0.42 -0.1 258,264 - astC JDDGAC_01480 0.43 +1.9 258,264 - astC JDDGAC_01480 0.43 +1.4
Or see this region's nucleotide sequence