Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS11790

Experiment: defined media with D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS11780 and LRK53_RS11785 are separated by 12 nucleotidesLRK53_RS11785 and LRK53_RS11790 overlap by 4 nucleotidesLRK53_RS11790 and LRK53_RS11795 overlap by 4 nucleotidesLRK53_RS11795 and LRK53_RS11800 overlap by 17 nucleotides LRK53_RS11780: LRK53_RS11780 - cytochrome-c oxidase, cbb3-type subunit I, at 2,625,247 to 2,626,713 _RS11780 LRK53_RS11785: LRK53_RS11785 - cytochrome-c oxidase, cbb3-type subunit II, at 2,626,726 to 2,627,376 _RS11785 LRK53_RS11790: LRK53_RS11790 - cbb3-type cytochrome c oxidase subunit 3, at 2,627,373 to 2,627,555 _RS11790 LRK53_RS11795: LRK53_RS11795 - cytochrome-c oxidase, cbb3-type subunit III, at 2,627,552 to 2,628,460 _RS11795 LRK53_RS11800: LRK53_RS11800 - hypothetical protein, at 2,628,444 to 2,628,680 _RS11800 Position (kb) 2627 2628Strain fitness (log2 ratio) -2 -1 0 1at 2626.732 kb on + strandat 2626.732 kb on + strandat 2626.732 kb on + strandat 2626.733 kb on - strandat 2626.733 kb on - strandat 2626.909 kb on + strand, within LRK53_RS11785at 2626.910 kb on - strand, within LRK53_RS11785at 2627.012 kb on - strand, within LRK53_RS11785at 2627.078 kb on - strand, within LRK53_RS11785at 2627.447 kb on + strand, within LRK53_RS11790at 2627.448 kb on - strand, within LRK53_RS11790at 2627.448 kb on - strand, within LRK53_RS11790at 2627.472 kb on + strand, within LRK53_RS11790at 2627.472 kb on + strand, within LRK53_RS11790at 2627.472 kb on + strand, within LRK53_RS11790at 2627.472 kb on + strand, within LRK53_RS11790at 2627.472 kb on + strand, within LRK53_RS11790at 2627.472 kb on + strand, within LRK53_RS11790at 2627.472 kb on + strand, within LRK53_RS11790at 2627.472 kb on + strand, within LRK53_RS11790at 2627.622 kb on - strandat 2627.772 kb on - strand, within LRK53_RS11795at 2628.297 kb on + strand, within LRK53_RS11795at 2628.297 kb on + strand, within LRK53_RS11795at 2628.297 kb on + strand, within LRK53_RS11795at 2628.297 kb on + strand, within LRK53_RS11795at 2628.297 kb on + strand, within LRK53_RS11795at 2628.297 kb on + strand, within LRK53_RS11795at 2628.297 kb on + strand, within LRK53_RS11795at 2628.297 kb on + strand, within LRK53_RS11795at 2628.297 kb on + strand, within LRK53_RS11795at 2628.297 kb on + strand, within LRK53_RS11795at 2628.297 kb on + strand, within LRK53_RS11795at 2628.297 kb on + strand, within LRK53_RS11795at 2628.298 kb on - strand, within LRK53_RS11795at 2628.298 kb on - strand, within LRK53_RS11795at 2628.298 kb on - strand, within LRK53_RS11795at 2628.298 kb on - strand, within LRK53_RS11795at 2628.416 kb on + strandat 2628.422 kb on + strandat 2628.422 kb on + strandat 2628.423 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction defined media with D-Glucose
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2,626,732 + +0.9
2,626,732 + -0.1
2,626,732 + -1.1
2,626,733 - -0.1
2,626,733 - +0.9
2,626,909 + LRK53_RS11785 0.28 -0.1
2,626,910 - LRK53_RS11785 0.28 -0.1
2,627,012 - LRK53_RS11785 0.44 +0.9
2,627,078 - LRK53_RS11785 0.54 -0.1
2,627,447 + LRK53_RS11790 0.40 -1.1
2,627,448 - LRK53_RS11790 0.41 +0.9
2,627,448 - LRK53_RS11790 0.41 -1.7
2,627,472 + LRK53_RS11790 0.54 -0.7
2,627,472 + LRK53_RS11790 0.54 -0.1
2,627,472 + LRK53_RS11790 0.54 -0.1
2,627,472 + LRK53_RS11790 0.54 -1.9
2,627,472 + LRK53_RS11790 0.54 +0.9
2,627,472 + LRK53_RS11790 0.54 +0.9
2,627,472 + LRK53_RS11790 0.54 -1.7
2,627,472 + LRK53_RS11790 0.54 -0.1
2,627,622 - +0.9
2,627,772 - LRK53_RS11795 0.24 +0.9
2,628,297 + LRK53_RS11795 0.82 -0.1
2,628,297 + LRK53_RS11795 0.82 +0.9
2,628,297 + LRK53_RS11795 0.82 +0.9
2,628,297 + LRK53_RS11795 0.82 -0.1
2,628,297 + LRK53_RS11795 0.82 +0.9
2,628,297 + LRK53_RS11795 0.82 +0.9
2,628,297 + LRK53_RS11795 0.82 +0.9
2,628,297 + LRK53_RS11795 0.82 +0.9
2,628,297 + LRK53_RS11795 0.82 -0.7
2,628,297 + LRK53_RS11795 0.82 +0.9
2,628,297 + LRK53_RS11795 0.82 +0.9
2,628,297 + LRK53_RS11795 0.82 -0.1
2,628,298 - LRK53_RS11795 0.82 +0.9
2,628,298 - LRK53_RS11795 0.82 +0.9
2,628,298 - LRK53_RS11795 0.82 -0.1
2,628,298 - LRK53_RS11795 0.82 -0.1
2,628,416 + +0.9
2,628,422 + -0.1
2,628,422 + -0.7
2,628,423 - -0.1

Or see this region's nucleotide sequence