Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS08460

Experiment: defined media with L-Serine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS08450 and LRK53_RS08455 overlap by 4 nucleotidesLRK53_RS08455 and LRK53_RS08460 are separated by 28 nucleotidesLRK53_RS08460 and LRK53_RS08465 overlap by 4 nucleotides LRK53_RS08450: LRK53_RS08450 - YerC/YecD family TrpR-related protein, at 1,899,476 to 1,899,808 _RS08450 LRK53_RS08455: LRK53_RS08455 - ATP phosphoribosyltransferase, at 1,899,805 to 1,900,698 _RS08455 LRK53_RS08460: LRK53_RS08460 - histidinol dehydrogenase, at 1,900,727 to 1,902,025 _RS08460 LRK53_RS08465: LRK53_RS08465 - histidinol-phosphate transaminase, at 1,902,022 to 1,903,098 _RS08465 Position (kb) 1900 1901 1902 1903Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1899.747 kb on - strand, within LRK53_RS08450at 1900.144 kb on + strand, within LRK53_RS08455at 1900.144 kb on + strand, within LRK53_RS08455at 1900.144 kb on + strand, within LRK53_RS08455at 1900.145 kb on - strand, within LRK53_RS08455at 1900.145 kb on - strand, within LRK53_RS08455at 1900.145 kb on - strand, within LRK53_RS08455at 1900.177 kb on - strand, within LRK53_RS08455at 1900.190 kb on - strand, within LRK53_RS08455at 1900.889 kb on + strand, within LRK53_RS08460at 1900.889 kb on + strand, within LRK53_RS08460at 1900.889 kb on + strand, within LRK53_RS08460at 1900.890 kb on - strand, within LRK53_RS08460at 1900.890 kb on - strand, within LRK53_RS08460at 1901.105 kb on + strand, within LRK53_RS08460at 1901.105 kb on + strand, within LRK53_RS08460at 1901.105 kb on + strand, within LRK53_RS08460at 1901.105 kb on + strand, within LRK53_RS08460at 1901.105 kb on + strand, within LRK53_RS08460at 1901.105 kb on + strand, within LRK53_RS08460at 1901.105 kb on + strand, within LRK53_RS08460at 1901.106 kb on - strand, within LRK53_RS08460at 1901.106 kb on - strand, within LRK53_RS08460at 1901.106 kb on - strand, within LRK53_RS08460at 1901.240 kb on + strand, within LRK53_RS08460at 1901.241 kb on - strand, within LRK53_RS08460at 1901.241 kb on - strand, within LRK53_RS08460at 1901.271 kb on + strand, within LRK53_RS08460at 1901.271 kb on + strand, within LRK53_RS08460at 1901.271 kb on + strand, within LRK53_RS08460at 1901.271 kb on + strand, within LRK53_RS08460at 1901.271 kb on + strand, within LRK53_RS08460at 1901.271 kb on + strand, within LRK53_RS08460at 1901.272 kb on - strand, within LRK53_RS08460at 1901.272 kb on - strand, within LRK53_RS08460at 1901.272 kb on - strand, within LRK53_RS08460at 1901.312 kb on + strand, within LRK53_RS08460at 1901.312 kb on + strand, within LRK53_RS08460at 1901.312 kb on + strand, within LRK53_RS08460at 1901.313 kb on - strand, within LRK53_RS08460at 1901.604 kb on + strand, within LRK53_RS08460at 1901.604 kb on + strand, within LRK53_RS08460at 1901.605 kb on - strand, within LRK53_RS08460at 1901.605 kb on - strand, within LRK53_RS08460at 1901.843 kb on + strand, within LRK53_RS08460at 1901.843 kb on + strand, within LRK53_RS08460at 1901.843 kb on + strand, within LRK53_RS08460at 1901.843 kb on + strand, within LRK53_RS08460at 1901.843 kb on + strand, within LRK53_RS08460at 1901.843 kb on + strand, within LRK53_RS08460at 1901.843 kb on + strand, within LRK53_RS08460at 1901.843 kb on + strand, within LRK53_RS08460at 1901.843 kb on + strand, within LRK53_RS08460at 1901.844 kb on - strand, within LRK53_RS08460at 1901.844 kb on - strand, within LRK53_RS08460at 1901.844 kb on - strand, within LRK53_RS08460at 1901.844 kb on - strand, within LRK53_RS08460at 1901.844 kb on - strand, within LRK53_RS08460at 1901.844 kb on - strand, within LRK53_RS08460at 1901.844 kb on - strand, within LRK53_RS08460at 1901.844 kb on - strand, within LRK53_RS08460at 1901.844 kb on - strand, within LRK53_RS08460at 1901.844 kb on - strand, within LRK53_RS08460at 1901.844 kb on - strand, within LRK53_RS08460at 1901.861 kb on + strand, within LRK53_RS08460at 1901.862 kb on - strand, within LRK53_RS08460at 1901.862 kb on - strand, within LRK53_RS08460at 1901.862 kb on - strand, within LRK53_RS08460at 1901.885 kb on + strand, within LRK53_RS08460at 1901.886 kb on - strand, within LRK53_RS08460at 1901.886 kb on - strand, within LRK53_RS08460at 1902.070 kb on + strandat 1902.070 kb on + strandat 1902.071 kb on - strandat 1902.220 kb on + strand, within LRK53_RS08465at 1902.346 kb on + strand, within LRK53_RS08465at 1902.346 kb on + strand, within LRK53_RS08465at 1902.346 kb on + strand, within LRK53_RS08465at 1902.346 kb on + strand, within LRK53_RS08465at 1902.346 kb on + strand, within LRK53_RS08465at 1902.346 kb on + strand, within LRK53_RS08465at 1902.346 kb on + strand, within LRK53_RS08465at 1902.346 kb on + strand, within LRK53_RS08465at 1902.346 kb on + strand, within LRK53_RS08465at 1902.346 kb on + strand, within LRK53_RS08465at 1902.346 kb on + strand, within LRK53_RS08465at 1902.346 kb on + strand, within LRK53_RS08465at 1902.346 kb on + strand, within LRK53_RS08465at 1902.346 kb on + strand, within LRK53_RS08465at 1902.346 kb on + strand, within LRK53_RS08465at 1902.346 kb on + strand, within LRK53_RS08465at 1902.346 kb on + strand, within LRK53_RS08465at 1902.346 kb on + strand, within LRK53_RS08465at 1902.346 kb on + strand, within LRK53_RS08465at 1902.346 kb on + strand, within LRK53_RS08465at 1902.346 kb on + strand, within LRK53_RS08465at 1902.346 kb on + strand, within LRK53_RS08465at 1902.346 kb on + strand, within LRK53_RS08465at 1902.346 kb on + strand, within LRK53_RS08465at 1902.346 kb on + strand, within LRK53_RS08465at 1902.347 kb on - strand, within LRK53_RS08465at 1902.347 kb on - strand, within LRK53_RS08465at 1902.347 kb on - strand, within LRK53_RS08465at 1902.347 kb on - strand, within LRK53_RS08465at 1902.347 kb on - strand, within LRK53_RS08465at 1902.347 kb on - strand, within LRK53_RS08465at 1902.347 kb on - strand, within LRK53_RS08465at 1902.347 kb on - strand, within LRK53_RS08465at 1902.347 kb on - strand, within LRK53_RS08465at 1902.347 kb on - strand, within LRK53_RS08465at 1902.347 kb on - strand, within LRK53_RS08465at 1902.347 kb on - strand, within LRK53_RS08465at 1902.347 kb on - strand, within LRK53_RS08465at 1902.347 kb on - strand, within LRK53_RS08465at 1902.347 kb on - strand, within LRK53_RS08465at 1902.347 kb on - strand, within LRK53_RS08465at 1902.347 kb on - strand, within LRK53_RS08465at 1902.347 kb on - strand, within LRK53_RS08465at 1902.347 kb on - strand, within LRK53_RS08465at 1902.347 kb on - strand, within LRK53_RS08465at 1902.347 kb on - strand, within LRK53_RS08465at 1902.347 kb on - strand, within LRK53_RS08465at 1902.347 kb on - strand, within LRK53_RS08465at 1902.347 kb on - strand, within LRK53_RS08465at 1902.571 kb on + strand, within LRK53_RS08465at 1902.571 kb on + strand, within LRK53_RS08465at 1902.571 kb on + strand, within LRK53_RS08465at 1902.571 kb on + strand, within LRK53_RS08465at 1902.571 kb on + strand, within LRK53_RS08465at 1902.571 kb on + strand, within LRK53_RS08465at 1902.571 kb on + strand, within LRK53_RS08465at 1902.571 kb on + strand, within LRK53_RS08465at 1902.571 kb on + strand, within LRK53_RS08465at 1902.571 kb on + strand, within LRK53_RS08465at 1902.571 kb on + strand, within LRK53_RS08465at 1902.571 kb on + strand, within LRK53_RS08465at 1902.571 kb on + strand, within LRK53_RS08465at 1902.571 kb on + strand, within LRK53_RS08465at 1902.571 kb on + strand, within LRK53_RS08465at 1902.572 kb on - strand, within LRK53_RS08465at 1902.572 kb on - strand, within LRK53_RS08465at 1902.572 kb on - strand, within LRK53_RS08465at 1902.572 kb on - strand, within LRK53_RS08465at 1902.572 kb on - strand, within LRK53_RS08465at 1902.572 kb on - strand, within LRK53_RS08465at 1902.638 kb on + strand, within LRK53_RS08465at 1902.638 kb on + strand, within LRK53_RS08465at 1902.638 kb on + strand, within LRK53_RS08465at 1902.639 kb on - strand, within LRK53_RS08465at 1902.639 kb on - strand, within LRK53_RS08465at 1902.639 kb on - strand, within LRK53_RS08465at 1902.639 kb on - strand, within LRK53_RS08465at 1902.639 kb on - strand, within LRK53_RS08465

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Per-strain Table

Position Strand Gene LocusTag Fraction defined media with L-Serine
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1,899,747 - LRK53_RS08450 0.81 -3.3
1,900,144 + LRK53_RS08455 0.38 -1.6
1,900,144 + LRK53_RS08455 0.38 -2.0
1,900,144 + LRK53_RS08455 0.38 -0.8
1,900,145 - LRK53_RS08455 0.38 -1.2
1,900,145 - LRK53_RS08455 0.38 +0.8
1,900,145 - LRK53_RS08455 0.38 -1.6
1,900,177 - LRK53_RS08455 0.42 -1.2
1,900,190 - LRK53_RS08455 0.43 -2.9
1,900,889 + LRK53_RS08460 0.12 -0.6
1,900,889 + LRK53_RS08460 0.12 -1.2
1,900,889 + LRK53_RS08460 0.12 -3.0
1,900,890 - LRK53_RS08460 0.13 -4.0
1,900,890 - LRK53_RS08460 0.13 -0.8
1,901,105 + LRK53_RS08460 0.29 -2.2
1,901,105 + LRK53_RS08460 0.29 -1.8
1,901,105 + LRK53_RS08460 0.29 -2.6
1,901,105 + LRK53_RS08460 0.29 -1.8
1,901,105 + LRK53_RS08460 0.29 -2.9
1,901,105 + LRK53_RS08460 0.29 -1.2
1,901,105 + LRK53_RS08460 0.29 -1.2
1,901,106 - LRK53_RS08460 0.29 -0.2
1,901,106 - LRK53_RS08460 0.29 -2.4
1,901,106 - LRK53_RS08460 0.29 -3.5
1,901,240 + LRK53_RS08460 0.39 -2.4
1,901,241 - LRK53_RS08460 0.40 +0.8
1,901,241 - LRK53_RS08460 0.40 -0.2
1,901,271 + LRK53_RS08460 0.42 -0.8
1,901,271 + LRK53_RS08460 0.42 -0.2
1,901,271 + LRK53_RS08460 0.42 -3.3
1,901,271 + LRK53_RS08460 0.42 -1.2
1,901,271 + LRK53_RS08460 0.42 -0.8
1,901,271 + LRK53_RS08460 0.42 -2.0
1,901,272 - LRK53_RS08460 0.42 -0.2
1,901,272 - LRK53_RS08460 0.42 -0.6
1,901,272 - LRK53_RS08460 0.42 -0.2
1,901,312 + LRK53_RS08460 0.45 -2.2
1,901,312 + LRK53_RS08460 0.45 -0.2
1,901,312 + LRK53_RS08460 0.45 -0.2
1,901,313 - LRK53_RS08460 0.45 -0.8
1,901,604 + LRK53_RS08460 0.68 -1.6
1,901,604 + LRK53_RS08460 0.68 -2.4
1,901,605 - LRK53_RS08460 0.68 -0.2
1,901,605 - LRK53_RS08460 0.68 -1.8
1,901,843 + LRK53_RS08460 0.86 -1.6
1,901,843 + LRK53_RS08460 0.86 -1.8
1,901,843 + LRK53_RS08460 0.86 -1.9
1,901,843 + LRK53_RS08460 0.86 -0.2
1,901,843 + LRK53_RS08460 0.86 -0.8
1,901,843 + LRK53_RS08460 0.86 -2.8
1,901,843 + LRK53_RS08460 0.86 -1.6
1,901,843 + LRK53_RS08460 0.86 -2.2
1,901,843 + LRK53_RS08460 0.86 -2.4
1,901,844 - LRK53_RS08460 0.86 -0.8
1,901,844 - LRK53_RS08460 0.86 -3.1
1,901,844 - LRK53_RS08460 0.86 -1.6
1,901,844 - LRK53_RS08460 0.86 -1.2
1,901,844 - LRK53_RS08460 0.86 -2.0
1,901,844 - LRK53_RS08460 0.86 -2.6
1,901,844 - LRK53_RS08460 0.86 -2.7
1,901,844 - LRK53_RS08460 0.86 -3.3
1,901,844 - LRK53_RS08460 0.86 -0.8
1,901,844 - LRK53_RS08460 0.86 -0.2
1,901,844 - LRK53_RS08460 0.86 -0.2
1,901,861 + LRK53_RS08460 0.87 -0.8
1,901,862 - LRK53_RS08460 0.87 -2.8
1,901,862 - LRK53_RS08460 0.87 +0.8
1,901,862 - LRK53_RS08460 0.87 -2.6
1,901,885 + LRK53_RS08460 0.89 -1.6
1,901,886 - LRK53_RS08460 0.89 -0.8
1,901,886 - LRK53_RS08460 0.89 -0.2
1,902,070 + -2.6
1,902,070 + -3.0
1,902,071 - -0.8
1,902,220 + LRK53_RS08465 0.18 -2.4
1,902,346 + LRK53_RS08465 0.30 -1.8
1,902,346 + LRK53_RS08465 0.30 -2.2
1,902,346 + LRK53_RS08465 0.30 -1.2
1,902,346 + LRK53_RS08465 0.30 -2.2
1,902,346 + LRK53_RS08465 0.30 -2.6
1,902,346 + LRK53_RS08465 0.30 -0.8
1,902,346 + LRK53_RS08465 0.30 -2.0
1,902,346 + LRK53_RS08465 0.30 -2.7
1,902,346 + LRK53_RS08465 0.30 -1.0
1,902,346 + LRK53_RS08465 0.30 -2.6
1,902,346 + LRK53_RS08465 0.30 -1.2
1,902,346 + LRK53_RS08465 0.30 -1.8
1,902,346 + LRK53_RS08465 0.30 -2.0
1,902,346 + LRK53_RS08465 0.30 -1.6
1,902,346 + LRK53_RS08465 0.30 -3.1
1,902,346 + LRK53_RS08465 0.30 -1.6
1,902,346 + LRK53_RS08465 0.30 -0.2
1,902,346 + LRK53_RS08465 0.30 -1.6
1,902,346 + LRK53_RS08465 0.30 -3.3
1,902,346 + LRK53_RS08465 0.30 +0.8
1,902,346 + LRK53_RS08465 0.30 -1.2
1,902,346 + LRK53_RS08465 0.30 -1.2
1,902,346 + LRK53_RS08465 0.30 -0.2
1,902,346 + LRK53_RS08465 0.30 -2.4
1,902,346 + LRK53_RS08465 0.30 -1.8
1,902,347 - LRK53_RS08465 0.30 -2.8
1,902,347 - LRK53_RS08465 0.30 -3.6
1,902,347 - LRK53_RS08465 0.30 -2.8
1,902,347 - LRK53_RS08465 0.30 -2.9
1,902,347 - LRK53_RS08465 0.30 -2.0
1,902,347 - LRK53_RS08465 0.30 -1.6
1,902,347 - LRK53_RS08465 0.30 -1.8
1,902,347 - LRK53_RS08465 0.30 -1.6
1,902,347 - LRK53_RS08465 0.30 -2.4
1,902,347 - LRK53_RS08465 0.30 -1.2
1,902,347 - LRK53_RS08465 0.30 -2.0
1,902,347 - LRK53_RS08465 0.30 -0.2
1,902,347 - LRK53_RS08465 0.30 -2.2
1,902,347 - LRK53_RS08465 0.30 -1.6
1,902,347 - LRK53_RS08465 0.30 -0.8
1,902,347 - LRK53_RS08465 0.30 -3.6
1,902,347 - LRK53_RS08465 0.30 -0.8
1,902,347 - LRK53_RS08465 0.30 -2.2
1,902,347 - LRK53_RS08465 0.30 -4.8
1,902,347 - LRK53_RS08465 0.30 -2.7
1,902,347 - LRK53_RS08465 0.30 -3.2
1,902,347 - LRK53_RS08465 0.30 -1.2
1,902,347 - LRK53_RS08465 0.30 -3.4
1,902,347 - LRK53_RS08465 0.30 -1.2
1,902,571 + LRK53_RS08465 0.51 -1.2
1,902,571 + LRK53_RS08465 0.51 -0.8
1,902,571 + LRK53_RS08465 0.51 -0.2
1,902,571 + LRK53_RS08465 0.51 -3.3
1,902,571 + LRK53_RS08465 0.51 -0.2
1,902,571 + LRK53_RS08465 0.51 -3.6
1,902,571 + LRK53_RS08465 0.51 -1.6
1,902,571 + LRK53_RS08465 0.51 -0.8
1,902,571 + LRK53_RS08465 0.51 -0.8
1,902,571 + LRK53_RS08465 0.51 -0.8
1,902,571 + LRK53_RS08465 0.51 +0.2
1,902,571 + LRK53_RS08465 0.51 -3.4
1,902,571 + LRK53_RS08465 0.51 -3.8
1,902,571 + LRK53_RS08465 0.51 -0.8
1,902,571 + LRK53_RS08465 0.51 -0.2
1,902,572 - LRK53_RS08465 0.51 -2.0
1,902,572 - LRK53_RS08465 0.51 -2.9
1,902,572 - LRK53_RS08465 0.51 -4.4
1,902,572 - LRK53_RS08465 0.51 -4.0
1,902,572 - LRK53_RS08465 0.51 -1.6
1,902,572 - LRK53_RS08465 0.51 -3.1
1,902,638 + LRK53_RS08465 0.57 -1.6
1,902,638 + LRK53_RS08465 0.57 -3.1
1,902,638 + LRK53_RS08465 0.57 -2.2
1,902,639 - LRK53_RS08465 0.57 -3.3
1,902,639 - LRK53_RS08465 0.57 -2.2
1,902,639 - LRK53_RS08465 0.57 -4.1
1,902,639 - LRK53_RS08465 0.57 -1.2
1,902,639 - LRK53_RS08465 0.57 -2.2

Or see this region's nucleotide sequence