Experiment: defined media with L-Serine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS02905 and LRK53_RS02910 overlap by 4 nucleotides LRK53_RS02910 and LRK53_RS02915 overlap by 4 nucleotides LRK53_RS02915 and LRK53_RS02920 are separated by 189 nucleotides
LRK53_RS02905: LRK53_RS02905 - 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB, at 672,110 to 673,411
_RS02905
LRK53_RS02910: LRK53_RS02910 - methionyl-tRNA formyltransferase, at 673,408 to 674,349
_RS02910
LRK53_RS02915: LRK53_RS02915 - peptide deformylase, at 674,346 to 674,855
_RS02915
LRK53_RS02920: LRK53_RS02920 - LysM peptidoglycan-binding domain-containing protein, at 675,045 to 676,166
_RS02920
Position (kb) 673
674
675 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 672.921 kb on - strand, within LRK53_RS02905 at 673.093 kb on + strand, within LRK53_RS02905 at 673.093 kb on + strand, within LRK53_RS02905 at 673.093 kb on + strand, within LRK53_RS02905 at 673.094 kb on - strand, within LRK53_RS02905 at 673.094 kb on - strand, within LRK53_RS02905 at 673.094 kb on - strand, within LRK53_RS02905 at 673.128 kb on + strand, within LRK53_RS02905 at 673.128 kb on + strand, within LRK53_RS02905 at 673.128 kb on + strand, within LRK53_RS02905 at 673.129 kb on - strand, within LRK53_RS02905 at 673.129 kb on - strand, within LRK53_RS02905 at 673.129 kb on - strand, within LRK53_RS02905 at 674.419 kb on + strand, within LRK53_RS02915 at 674.917 kb on + strand at 674.917 kb on + strand at 674.917 kb on + strand at 674.917 kb on + strand at 674.917 kb on + strand at 674.917 kb on + strand at 674.917 kb on + strand at 674.917 kb on + strand at 674.917 kb on + strand at 674.917 kb on + strand at 674.918 kb on - strand at 674.918 kb on - strand at 674.918 kb on - strand at 674.918 kb on - strand at 674.918 kb on - strand at 674.918 kb on - strand at 674.918 kb on - strand at 674.918 kb on - strand at 674.918 kb on - strand at 674.918 kb on - strand at 674.918 kb on - strand at 674.918 kb on - strand at 674.929 kb on + strand at 674.929 kb on + strand at 674.929 kb on + strand at 674.929 kb on + strand at 674.929 kb on + strand at 674.929 kb on + strand at 674.929 kb on + strand at 674.929 kb on + strand at 674.929 kb on + strand at 674.929 kb on + strand at 674.929 kb on + strand at 674.929 kb on + strand at 674.929 kb on + strand at 674.929 kb on + strand at 674.929 kb on + strand at 674.930 kb on - strand at 674.930 kb on - strand at 674.930 kb on - strand at 674.930 kb on - strand at 674.930 kb on - strand at 674.930 kb on - strand at 674.930 kb on - strand at 674.930 kb on - strand at 674.930 kb on - strand at 674.930 kb on - strand at 674.930 kb on - strand at 674.930 kb on - strand at 674.930 kb on - strand at 674.930 kb on - strand at 674.934 kb on + strand at 674.934 kb on + strand at 674.934 kb on + strand at 674.934 kb on + strand at 674.934 kb on + strand at 674.934 kb on + strand at 674.934 kb on + strand at 674.934 kb on + strand at 674.935 kb on - strand at 674.935 kb on - strand at 674.954 kb on + strand at 674.954 kb on + strand at 674.954 kb on + strand at 674.955 kb on - strand at 674.955 kb on - strand at 674.955 kb on - strand at 674.955 kb on - strand at 674.955 kb on - strand at 675.059 kb on + strand at 675.059 kb on + strand at 675.099 kb on + strand at 675.099 kb on + strand at 675.099 kb on + strand at 675.099 kb on + strand at 675.099 kb on + strand at 675.099 kb on + strand at 675.099 kb on + strand at 675.099 kb on + strand at 675.099 kb on + strand at 675.099 kb on + strand at 675.099 kb on + strand at 675.099 kb on + strand at 675.099 kb on + strand at 675.100 kb on - strand at 675.100 kb on - strand at 675.100 kb on - strand at 675.100 kb on - strand at 675.100 kb on - strand at 675.100 kb on - strand at 675.100 kb on - strand at 675.100 kb on - strand at 675.141 kb on + strand at 675.141 kb on + strand at 675.141 kb on + strand at 675.141 kb on + strand at 675.141 kb on + strand at 675.141 kb on + strand at 675.141 kb on + strand at 675.141 kb on + strand at 675.141 kb on + strand at 675.141 kb on + strand at 675.141 kb on + strand at 675.141 kb on + strand at 675.141 kb on + strand at 675.141 kb on + strand at 675.141 kb on + strand at 675.141 kb on + strand at 675.142 kb on - strand at 675.142 kb on - strand at 675.142 kb on - strand at 675.142 kb on - strand at 675.142 kb on - strand at 675.142 kb on - strand at 675.142 kb on - strand at 675.142 kb on - strand at 675.142 kb on - strand at 675.142 kb on - strand at 675.173 kb on + strand, within LRK53_RS02920 at 675.173 kb on + strand, within LRK53_RS02920 at 675.173 kb on + strand, within LRK53_RS02920 at 675.174 kb on - strand, within LRK53_RS02920 at 675.174 kb on - strand, within LRK53_RS02920 at 675.174 kb on - strand, within LRK53_RS02920 at 675.174 kb on - strand, within LRK53_RS02920 at 675.174 kb on - strand, within LRK53_RS02920 at 675.174 kb on - strand, within LRK53_RS02920 at 675.174 kb on - strand, within LRK53_RS02920 at 675.258 kb on + strand, within LRK53_RS02920 at 675.259 kb on - strand, within LRK53_RS02920 at 675.259 kb on - strand, within LRK53_RS02920
Per-strain Table
Position Strand Gene LocusTag Fraction defined media with L-Serine remove 672,921 - LRK53_RS02905 0.62 -1.6 673,093 + LRK53_RS02905 0.75 -0.6 673,093 + LRK53_RS02905 0.75 +0.7 673,093 + LRK53_RS02905 0.75 +0.7 673,094 - LRK53_RS02905 0.76 -1.0 673,094 - LRK53_RS02905 0.76 -0.0 673,094 - LRK53_RS02905 0.76 -0.9 673,128 + LRK53_RS02905 0.78 +1.6 673,128 + LRK53_RS02905 0.78 +0.3 673,128 + LRK53_RS02905 0.78 -0.9 673,129 - LRK53_RS02905 0.78 +1.0 673,129 - LRK53_RS02905 0.78 -0.6 673,129 - LRK53_RS02905 0.78 -1.2 674,419 + LRK53_RS02915 0.14 -0.6 674,917 + +0.3 674,917 + +0.1 674,917 + -0.3 674,917 + -2.3 674,917 + -1.1 674,917 + -0.0 674,917 + +1.0 674,917 + +0.2 674,917 + -1.6 674,917 + +0.1 674,918 - -0.0 674,918 - -0.2 674,918 - +1.0 674,918 - -1.0 674,918 - -1.0 674,918 - +1.0 674,918 - -0.0 674,918 - -1.3 674,918 - -1.3 674,918 - -0.9 674,918 - +0.3 674,918 - -1.3 674,929 + -0.0 674,929 + +0.3 674,929 + -1.0 674,929 + -1.3 674,929 + -0.3 674,929 + -1.0 674,929 + +0.6 674,929 + -0.7 674,929 + -1.3 674,929 + -2.4 674,929 + -2.3 674,929 + -3.3 674,929 + -1.0 674,929 + -1.5 674,929 + -3.6 674,930 - -1.6 674,930 - -2.2 674,930 - +0.3 674,930 - -1.6 674,930 - -0.3 674,930 - +0.4 674,930 - -0.0 674,930 - -0.4 674,930 - -0.0 674,930 - -0.0 674,930 - -1.8 674,930 - -1.4 674,930 - -0.0 674,930 - -0.6 674,934 + +0.3 674,934 + -0.6 674,934 + -0.6 674,934 + -0.7 674,934 + -1.3 674,934 + -1.1 674,934 + -0.6 674,934 + +0.2 674,935 - +1.0 674,935 - -1.2 674,954 + -0.0 674,954 + -1.2 674,954 + -1.0 674,955 - -0.3 674,955 - -2.0 674,955 - -0.4 674,955 - +2.3 674,955 - -1.6 675,059 + +0.6 675,059 + -0.9 675,099 + -0.6 675,099 + -0.8 675,099 + +0.4 675,099 + +1.0 675,099 + -0.2 675,099 + -0.6 675,099 + +2.6 675,099 + -1.3 675,099 + -1.8 675,099 + -0.9 675,099 + -0.0 675,099 + +1.0 675,099 + +1.4 675,100 - -1.0 675,100 - +0.3 675,100 - -0.5 675,100 - -0.9 675,100 - -1.0 675,100 - -1.0 675,100 - -0.8 675,100 - -0.6 675,141 + -0.3 675,141 + -0.0 675,141 + -1.3 675,141 + -1.3 675,141 + -0.0 675,141 + +0.6 675,141 + +0.4 675,141 + -1.0 675,141 + -1.6 675,141 + -0.6 675,141 + -1.3 675,141 + -1.4 675,141 + -0.6 675,141 + -1.3 675,141 + -0.8 675,141 + -0.6 675,142 - +1.6 675,142 - -0.8 675,142 - -0.3 675,142 - +0.2 675,142 - +1.0 675,142 - -1.0 675,142 - -0.0 675,142 - -1.1 675,142 - +2.6 675,142 - -2.0 675,173 + LRK53_RS02920 0.11 +1.0 675,173 + LRK53_RS02920 0.11 +1.0 675,173 + LRK53_RS02920 0.11 -0.6 675,174 - LRK53_RS02920 0.11 -2.0 675,174 - LRK53_RS02920 0.11 -0.0 675,174 - LRK53_RS02920 0.11 +2.0 675,174 - LRK53_RS02920 0.11 -0.6 675,174 - LRK53_RS02920 0.11 -0.2 675,174 - LRK53_RS02920 0.11 -0.0 675,174 - LRK53_RS02920 0.11 -0.6 675,258 + LRK53_RS02920 0.19 -0.0 675,259 - LRK53_RS02920 0.19 -2.3 675,259 - LRK53_RS02920 0.19 +1.6
Or see this region's nucleotide sequence