Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS14335

Experiment: R2A_PIPES no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS14325 and LRK53_RS14330 are separated by 10 nucleotidesLRK53_RS14330 and LRK53_RS14335 are separated by 14 nucleotidesLRK53_RS14335 and LRK53_RS14340 are separated by 70 nucleotides LRK53_RS14325: LRK53_RS14325 - ABC transporter permease, at 3,143,060 to 3,143,893 _RS14325 LRK53_RS14330: LRK53_RS14330 - nitrous oxide reductase accessory protein NosL, at 3,143,904 to 3,144,566 _RS14330 LRK53_RS14335: LRK53_RS14335 - twin-arginine translocase TatA/TatE family subunit, at 3,144,581 to 3,144,784 _RS14335 LRK53_RS14340: LRK53_RS14340 - succinyl-diaminopimelate desuccinylase, at 3,144,855 to 3,145,994 _RS14340 Position (kb) 3144 3145Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3143.687 kb on + strand, within LRK53_RS14325at 3143.687 kb on + strand, within LRK53_RS14325at 3143.687 kb on + strand, within LRK53_RS14325at 3143.687 kb on + strand, within LRK53_RS14325at 3143.687 kb on + strand, within LRK53_RS14325at 3143.687 kb on + strand, within LRK53_RS14325at 3143.687 kb on + strand, within LRK53_RS14325at 3143.688 kb on - strand, within LRK53_RS14325at 3143.693 kb on + strand, within LRK53_RS14325at 3143.693 kb on + strand, within LRK53_RS14325at 3143.693 kb on + strand, within LRK53_RS14325at 3143.694 kb on - strand, within LRK53_RS14325at 3143.694 kb on - strand, within LRK53_RS14325at 3143.772 kb on + strand, within LRK53_RS14325at 3143.772 kb on + strand, within LRK53_RS14325at 3143.772 kb on + strand, within LRK53_RS14325at 3143.772 kb on + strand, within LRK53_RS14325at 3143.772 kb on + strand, within LRK53_RS14325at 3143.772 kb on + strand, within LRK53_RS14325at 3143.773 kb on - strand, within LRK53_RS14325at 3143.773 kb on - strand, within LRK53_RS14325at 3143.773 kb on - strand, within LRK53_RS14325at 3143.773 kb on - strand, within LRK53_RS14325at 3143.773 kb on - strand, within LRK53_RS14325at 3143.773 kb on - strand, within LRK53_RS14325at 3143.773 kb on - strand, within LRK53_RS14325at 3143.773 kb on - strand, within LRK53_RS14325at 3143.801 kb on + strand, within LRK53_RS14325at 3144.051 kb on + strand, within LRK53_RS14330at 3144.051 kb on + strand, within LRK53_RS14330at 3144.051 kb on + strand, within LRK53_RS14330at 3144.051 kb on + strand, within LRK53_RS14330at 3144.051 kb on + strand, within LRK53_RS14330at 3144.051 kb on + strand, within LRK53_RS14330at 3144.051 kb on + strand, within LRK53_RS14330at 3144.051 kb on + strand, within LRK53_RS14330at 3144.051 kb on + strand, within LRK53_RS14330at 3144.051 kb on + strand, within LRK53_RS14330at 3144.051 kb on + strand, within LRK53_RS14330at 3144.051 kb on + strand, within LRK53_RS14330at 3144.051 kb on + strand, within LRK53_RS14330at 3144.051 kb on + strand, within LRK53_RS14330at 3144.051 kb on + strand, within LRK53_RS14330at 3144.051 kb on + strand, within LRK53_RS14330at 3144.051 kb on + strand, within LRK53_RS14330at 3144.051 kb on + strand, within LRK53_RS14330at 3144.051 kb on + strand, within LRK53_RS14330at 3144.051 kb on + strand, within LRK53_RS14330at 3144.052 kb on - strand, within LRK53_RS14330at 3144.052 kb on - strand, within LRK53_RS14330at 3144.052 kb on - strand, within LRK53_RS14330at 3144.052 kb on - strand, within LRK53_RS14330at 3144.052 kb on - strand, within LRK53_RS14330at 3144.052 kb on - strand, within LRK53_RS14330at 3144.052 kb on - strand, within LRK53_RS14330at 3144.052 kb on - strand, within LRK53_RS14330at 3144.052 kb on - strand, within LRK53_RS14330at 3144.052 kb on - strand, within LRK53_RS14330at 3144.052 kb on - strand, within LRK53_RS14330at 3144.052 kb on - strand, within LRK53_RS14330at 3144.052 kb on - strand, within LRK53_RS14330at 3144.052 kb on - strand, within LRK53_RS14330at 3144.144 kb on + strand, within LRK53_RS14330at 3144.144 kb on + strand, within LRK53_RS14330at 3144.144 kb on + strand, within LRK53_RS14330at 3144.144 kb on + strand, within LRK53_RS14330at 3144.144 kb on + strand, within LRK53_RS14330at 3144.145 kb on - strand, within LRK53_RS14330at 3144.145 kb on - strand, within LRK53_RS14330at 3144.145 kb on - strand, within LRK53_RS14330at 3144.186 kb on + strand, within LRK53_RS14330at 3144.186 kb on + strand, within LRK53_RS14330at 3144.186 kb on + strand, within LRK53_RS14330at 3144.186 kb on + strand, within LRK53_RS14330at 3144.186 kb on + strand, within LRK53_RS14330at 3144.186 kb on + strand, within LRK53_RS14330at 3144.186 kb on + strand, within LRK53_RS14330at 3144.186 kb on + strand, within LRK53_RS14330at 3144.186 kb on + strand, within LRK53_RS14330at 3144.187 kb on - strand, within LRK53_RS14330at 3144.187 kb on - strand, within LRK53_RS14330at 3144.187 kb on - strand, within LRK53_RS14330at 3144.187 kb on - strand, within LRK53_RS14330at 3144.187 kb on - strand, within LRK53_RS14330at 3144.187 kb on - strand, within LRK53_RS14330at 3144.187 kb on - strand, within LRK53_RS14330at 3144.187 kb on - strand, within LRK53_RS14330at 3144.187 kb on - strand, within LRK53_RS14330at 3144.187 kb on - strand, within LRK53_RS14330at 3144.187 kb on - strand, within LRK53_RS14330at 3144.187 kb on - strand, within LRK53_RS14330at 3144.187 kb on - strand, within LRK53_RS14330at 3144.187 kb on - strand, within LRK53_RS14330at 3144.187 kb on - strand, within LRK53_RS14330at 3144.187 kb on - strand, within LRK53_RS14330at 3144.187 kb on - strand, within LRK53_RS14330at 3144.187 kb on - strand, within LRK53_RS14330at 3144.187 kb on - strand, within LRK53_RS14330at 3144.267 kb on + strand, within LRK53_RS14330at 3144.267 kb on + strand, within LRK53_RS14330at 3144.267 kb on + strand, within LRK53_RS14330at 3144.267 kb on + strand, within LRK53_RS14330at 3144.268 kb on - strand, within LRK53_RS14330at 3144.268 kb on - strand, within LRK53_RS14330at 3144.268 kb on - strand, within LRK53_RS14330at 3144.268 kb on - strand, within LRK53_RS14330at 3144.268 kb on - strand, within LRK53_RS14330at 3144.268 kb on - strand, within LRK53_RS14330at 3144.268 kb on - strand, within LRK53_RS14330at 3144.268 kb on - strand, within LRK53_RS14330at 3144.268 kb on - strand, within LRK53_RS14330at 3144.268 kb on - strand, within LRK53_RS14330at 3144.418 kb on - strand, within LRK53_RS14330at 3144.624 kb on + strand, within LRK53_RS14335at 3144.630 kb on + strand, within LRK53_RS14335at 3144.630 kb on + strand, within LRK53_RS14335at 3144.630 kb on + strand, within LRK53_RS14335at 3144.630 kb on + strand, within LRK53_RS14335at 3144.630 kb on + strand, within LRK53_RS14335at 3144.630 kb on + strand, within LRK53_RS14335at 3144.630 kb on + strand, within LRK53_RS14335at 3144.630 kb on + strand, within LRK53_RS14335at 3144.630 kb on + strand, within LRK53_RS14335at 3144.630 kb on + strand, within LRK53_RS14335at 3144.630 kb on + strand, within LRK53_RS14335at 3144.631 kb on - strand, within LRK53_RS14335at 3144.631 kb on - strand, within LRK53_RS14335at 3144.631 kb on - strand, within LRK53_RS14335at 3144.631 kb on - strand, within LRK53_RS14335

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES no stress control
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3,143,687 + LRK53_RS14325 0.75 -0.6
3,143,687 + LRK53_RS14325 0.75 -1.1
3,143,687 + LRK53_RS14325 0.75 -0.1
3,143,687 + LRK53_RS14325 0.75 +0.4
3,143,687 + LRK53_RS14325 0.75 -2.1
3,143,687 + LRK53_RS14325 0.75 -2.1
3,143,687 + LRK53_RS14325 0.75 -0.1
3,143,688 - LRK53_RS14325 0.75 +0.4
3,143,693 + LRK53_RS14325 0.76 -0.9
3,143,693 + LRK53_RS14325 0.76 -2.0
3,143,693 + LRK53_RS14325 0.76 -1.1
3,143,694 - LRK53_RS14325 0.76 -0.1
3,143,694 - LRK53_RS14325 0.76 -0.2
3,143,772 + LRK53_RS14325 0.85 -0.4
3,143,772 + LRK53_RS14325 0.85 -1.1
3,143,772 + LRK53_RS14325 0.85 -1.4
3,143,772 + LRK53_RS14325 0.85 -0.6
3,143,772 + LRK53_RS14325 0.85 -2.8
3,143,772 + LRK53_RS14325 0.85 -0.6
3,143,773 - LRK53_RS14325 0.85 +0.9
3,143,773 - LRK53_RS14325 0.85 -1.1
3,143,773 - LRK53_RS14325 0.85 +0.5
3,143,773 - LRK53_RS14325 0.85 -1.6
3,143,773 - LRK53_RS14325 0.85 +0.9
3,143,773 - LRK53_RS14325 0.85 -1.3
3,143,773 - LRK53_RS14325 0.85 -1.1
3,143,773 - LRK53_RS14325 0.85 -1.2
3,143,801 + LRK53_RS14325 0.89 -3.1
3,144,051 + LRK53_RS14330 0.22 -1.4
3,144,051 + LRK53_RS14330 0.22 +0.5
3,144,051 + LRK53_RS14330 0.22 -1.6
3,144,051 + LRK53_RS14330 0.22 -1.9
3,144,051 + LRK53_RS14330 0.22 -0.1
3,144,051 + LRK53_RS14330 0.22 -0.9
3,144,051 + LRK53_RS14330 0.22 -0.2
3,144,051 + LRK53_RS14330 0.22 -0.3
3,144,051 + LRK53_RS14330 0.22 -2.4
3,144,051 + LRK53_RS14330 0.22 -0.3
3,144,051 + LRK53_RS14330 0.22 -0.6
3,144,051 + LRK53_RS14330 0.22 -0.4
3,144,051 + LRK53_RS14330 0.22 -0.6
3,144,051 + LRK53_RS14330 0.22 -1.5
3,144,051 + LRK53_RS14330 0.22 -0.9
3,144,051 + LRK53_RS14330 0.22 +0.4
3,144,051 + LRK53_RS14330 0.22 -1.5
3,144,051 + LRK53_RS14330 0.22 -0.1
3,144,051 + LRK53_RS14330 0.22 -1.1
3,144,051 + LRK53_RS14330 0.22 -0.3
3,144,052 - LRK53_RS14330 0.22 -2.2
3,144,052 - LRK53_RS14330 0.22 -1.1
3,144,052 - LRK53_RS14330 0.22 +0.4
3,144,052 - LRK53_RS14330 0.22 -0.1
3,144,052 - LRK53_RS14330 0.22 -2.1
3,144,052 - LRK53_RS14330 0.22 -0.3
3,144,052 - LRK53_RS14330 0.22 -0.6
3,144,052 - LRK53_RS14330 0.22 -0.1
3,144,052 - LRK53_RS14330 0.22 -2.1
3,144,052 - LRK53_RS14330 0.22 -1.1
3,144,052 - LRK53_RS14330 0.22 +2.5
3,144,052 - LRK53_RS14330 0.22 -2.1
3,144,052 - LRK53_RS14330 0.22 -1.1
3,144,052 - LRK53_RS14330 0.22 +0.0
3,144,144 + LRK53_RS14330 0.36 -0.1
3,144,144 + LRK53_RS14330 0.36 -2.1
3,144,144 + LRK53_RS14330 0.36 -0.8
3,144,144 + LRK53_RS14330 0.36 -1.3
3,144,144 + LRK53_RS14330 0.36 +0.9
3,144,145 - LRK53_RS14330 0.36 -1.1
3,144,145 - LRK53_RS14330 0.36 -1.0
3,144,145 - LRK53_RS14330 0.36 -0.6
3,144,186 + LRK53_RS14330 0.43 +0.9
3,144,186 + LRK53_RS14330 0.43 -2.1
3,144,186 + LRK53_RS14330 0.43 +0.6
3,144,186 + LRK53_RS14330 0.43 +1.4
3,144,186 + LRK53_RS14330 0.43 -0.1
3,144,186 + LRK53_RS14330 0.43 -1.6
3,144,186 + LRK53_RS14330 0.43 -0.4
3,144,186 + LRK53_RS14330 0.43 -1.1
3,144,186 + LRK53_RS14330 0.43 +0.2
3,144,187 - LRK53_RS14330 0.43 +0.2
3,144,187 - LRK53_RS14330 0.43 -0.1
3,144,187 - LRK53_RS14330 0.43 -0.3
3,144,187 - LRK53_RS14330 0.43 -1.6
3,144,187 - LRK53_RS14330 0.43 +1.9
3,144,187 - LRK53_RS14330 0.43 -0.1
3,144,187 - LRK53_RS14330 0.43 -2.1
3,144,187 - LRK53_RS14330 0.43 +1.5
3,144,187 - LRK53_RS14330 0.43 -1.1
3,144,187 - LRK53_RS14330 0.43 -1.3
3,144,187 - LRK53_RS14330 0.43 +1.9
3,144,187 - LRK53_RS14330 0.43 -0.9
3,144,187 - LRK53_RS14330 0.43 -1.5
3,144,187 - LRK53_RS14330 0.43 -0.6
3,144,187 - LRK53_RS14330 0.43 -0.6
3,144,187 - LRK53_RS14330 0.43 -0.6
3,144,187 - LRK53_RS14330 0.43 -0.8
3,144,187 - LRK53_RS14330 0.43 +0.5
3,144,187 - LRK53_RS14330 0.43 -0.5
3,144,267 + LRK53_RS14330 0.55 -0.4
3,144,267 + LRK53_RS14330 0.55 +0.9
3,144,267 + LRK53_RS14330 0.55 -2.1
3,144,267 + LRK53_RS14330 0.55 +1.9
3,144,268 - LRK53_RS14330 0.55 +0.4
3,144,268 - LRK53_RS14330 0.55 -1.6
3,144,268 - LRK53_RS14330 0.55 -1.9
3,144,268 - LRK53_RS14330 0.55 -0.1
3,144,268 - LRK53_RS14330 0.55 -0.1
3,144,268 - LRK53_RS14330 0.55 -0.4
3,144,268 - LRK53_RS14330 0.55 -0.6
3,144,268 - LRK53_RS14330 0.55 +0.2
3,144,268 - LRK53_RS14330 0.55 -0.1
3,144,268 - LRK53_RS14330 0.55 -2.5
3,144,418 - LRK53_RS14330 0.78 -2.2
3,144,624 + LRK53_RS14335 0.21 +0.5
3,144,630 + LRK53_RS14335 0.24 -1.3
3,144,630 + LRK53_RS14335 0.24 -2.6
3,144,630 + LRK53_RS14335 0.24 -0.6
3,144,630 + LRK53_RS14335 0.24 -1.9
3,144,630 + LRK53_RS14335 0.24 -0.1
3,144,630 + LRK53_RS14335 0.24 -2.1
3,144,630 + LRK53_RS14335 0.24 -0.9
3,144,630 + LRK53_RS14335 0.24 -0.4
3,144,630 + LRK53_RS14335 0.24 -0.6
3,144,630 + LRK53_RS14335 0.24 -0.8
3,144,630 + LRK53_RS14335 0.24 +0.5
3,144,631 - LRK53_RS14335 0.25 -2.1
3,144,631 - LRK53_RS14335 0.25 -0.6
3,144,631 - LRK53_RS14335 0.25 -0.1
3,144,631 - LRK53_RS14335 0.25 -1.4

Or see this region's nucleotide sequence