Experiment: R2A_PIPES no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS06030 and LRK53_RS06035 overlap by 8 nucleotides LRK53_RS06035 and LRK53_RS06040 are separated by 105 nucleotides LRK53_RS06040 and LRK53_RS06045 are separated by 70 nucleotides LRK53_RS06045 and LRK53_RS06050 are separated by 169 nucleotides LRK53_RS06050 and LRK53_RS06055 are separated by 267 nucleotides
LRK53_RS06030: LRK53_RS06030 - nucleotidyl transferase AbiEii/AbiGii toxin family protein, at 1,389,569 to 1,390,297
_RS06030
LRK53_RS06035: LRK53_RS06035 - helix-turn-helix domain-containing protein, at 1,390,290 to 1,390,760
_RS06035
LRK53_RS06040: LRK53_RS06040 - HigA family addiction module antitoxin, at 1,390,866 to 1,391,105
_RS06040
LRK53_RS06045: LRK53_RS06045 - type II toxin-antitoxin system RelE/ParE family toxin, at 1,391,176 to 1,391,310
_RS06045
LRK53_RS06050: LRK53_RS06050 - nucleotidyltransferase domain-containing protein, at 1,391,480 to 1,391,866
_RS06050
LRK53_RS06055: LRK53_RS06055 - type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein, at 1,392,134 to 1,392,748
_RS06055
Position (kb) 1391
1392 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1390.215 kb on + strand, within LRK53_RS06030 at 1390.215 kb on + strand, within LRK53_RS06030 at 1390.215 kb on + strand, within LRK53_RS06030 at 1390.215 kb on + strand, within LRK53_RS06030 at 1390.215 kb on + strand, within LRK53_RS06030 at 1390.215 kb on + strand, within LRK53_RS06030 at 1390.216 kb on - strand, within LRK53_RS06030 at 1390.216 kb on - strand, within LRK53_RS06030 at 1390.216 kb on - strand, within LRK53_RS06030 at 1390.216 kb on - strand, within LRK53_RS06030 at 1390.509 kb on + strand, within LRK53_RS06035 at 1390.541 kb on - strand, within LRK53_RS06035 at 1390.541 kb on - strand, within LRK53_RS06035 at 1390.541 kb on - strand, within LRK53_RS06035 at 1390.541 kb on - strand, within LRK53_RS06035 at 1390.721 kb on + strand at 1390.721 kb on + strand at 1390.723 kb on + strand at 1390.724 kb on - strand at 1390.724 kb on - strand at 1390.751 kb on + strand at 1390.751 kb on + strand at 1390.751 kb on + strand at 1390.751 kb on + strand at 1390.751 kb on + strand at 1390.751 kb on + strand at 1390.752 kb on - strand at 1390.956 kb on + strand, within LRK53_RS06040 at 1390.956 kb on + strand, within LRK53_RS06040 at 1390.956 kb on + strand, within LRK53_RS06040 at 1390.956 kb on + strand, within LRK53_RS06040 at 1390.956 kb on + strand, within LRK53_RS06040 at 1390.956 kb on + strand, within LRK53_RS06040 at 1390.956 kb on + strand, within LRK53_RS06040 at 1390.956 kb on + strand, within LRK53_RS06040 at 1390.956 kb on + strand, within LRK53_RS06040 at 1390.956 kb on + strand, within LRK53_RS06040 at 1390.956 kb on + strand, within LRK53_RS06040 at 1390.956 kb on + strand, within LRK53_RS06040 at 1390.956 kb on + strand, within LRK53_RS06040 at 1390.956 kb on + strand, within LRK53_RS06040 at 1390.956 kb on + strand, within LRK53_RS06040 at 1390.956 kb on + strand, within LRK53_RS06040 at 1390.956 kb on + strand, within LRK53_RS06040 at 1390.956 kb on + strand, within LRK53_RS06040 at 1390.956 kb on + strand, within LRK53_RS06040 at 1390.956 kb on + strand, within LRK53_RS06040 at 1390.956 kb on + strand, within LRK53_RS06040 at 1390.956 kb on + strand, within LRK53_RS06040 at 1390.956 kb on + strand, within LRK53_RS06040 at 1390.956 kb on + strand, within LRK53_RS06040 at 1390.957 kb on - strand, within LRK53_RS06040 at 1390.957 kb on - strand, within LRK53_RS06040 at 1390.957 kb on - strand, within LRK53_RS06040 at 1390.957 kb on - strand, within LRK53_RS06040 at 1390.957 kb on - strand, within LRK53_RS06040 at 1390.957 kb on - strand, within LRK53_RS06040 at 1390.957 kb on - strand, within LRK53_RS06040 at 1390.957 kb on - strand, within LRK53_RS06040 at 1390.957 kb on - strand, within LRK53_RS06040 at 1390.957 kb on - strand, within LRK53_RS06040 at 1390.957 kb on - strand, within LRK53_RS06040 at 1390.957 kb on - strand, within LRK53_RS06040 at 1390.957 kb on - strand, within LRK53_RS06040 at 1390.957 kb on - strand, within LRK53_RS06040 at 1390.957 kb on - strand, within LRK53_RS06040 at 1390.957 kb on - strand, within LRK53_RS06040 at 1390.957 kb on - strand, within LRK53_RS06040 at 1390.957 kb on - strand, within LRK53_RS06040 at 1390.978 kb on + strand, within LRK53_RS06040 at 1390.978 kb on + strand, within LRK53_RS06040 at 1390.978 kb on + strand, within LRK53_RS06040 at 1390.979 kb on - strand, within LRK53_RS06040 at 1390.979 kb on - strand, within LRK53_RS06040 at 1391.177 kb on + strand at 1391.177 kb on + strand at 1391.177 kb on + strand at 1391.178 kb on - strand at 1391.183 kb on + strand at 1391.183 kb on + strand at 1391.183 kb on + strand at 1391.183 kb on + strand at 1391.183 kb on + strand at 1391.183 kb on + strand at 1391.183 kb on + strand at 1391.183 kb on + strand at 1391.183 kb on + strand at 1391.183 kb on + strand at 1391.183 kb on + strand at 1391.184 kb on - strand at 1391.184 kb on - strand at 1391.184 kb on - strand at 1391.184 kb on - strand at 1391.204 kb on + strand, within LRK53_RS06045 at 1391.204 kb on + strand, within LRK53_RS06045 at 1391.204 kb on + strand, within LRK53_RS06045 at 1391.204 kb on + strand, within LRK53_RS06045 at 1391.204 kb on + strand, within LRK53_RS06045 at 1391.204 kb on + strand, within LRK53_RS06045 at 1391.204 kb on + strand, within LRK53_RS06045 at 1391.205 kb on - strand, within LRK53_RS06045 at 1391.205 kb on - strand, within LRK53_RS06045 at 1391.205 kb on - strand, within LRK53_RS06045 at 1391.205 kb on - strand, within LRK53_RS06045 at 1391.205 kb on - strand, within LRK53_RS06045 at 1391.205 kb on - strand, within LRK53_RS06045 at 1391.347 kb on + strand at 1391.347 kb on + strand at 1391.347 kb on + strand at 1391.347 kb on + strand at 1391.348 kb on - strand at 1391.348 kb on - strand at 1391.348 kb on - strand at 1391.526 kb on + strand, within LRK53_RS06050 at 1391.526 kb on + strand, within LRK53_RS06050 at 1391.526 kb on + strand, within LRK53_RS06050 at 1391.526 kb on + strand, within LRK53_RS06050 at 1391.526 kb on + strand, within LRK53_RS06050 at 1391.527 kb on - strand, within LRK53_RS06050 at 1391.527 kb on - strand, within LRK53_RS06050 at 1391.527 kb on - strand, within LRK53_RS06050 at 1391.527 kb on - strand, within LRK53_RS06050 at 1391.527 kb on - strand, within LRK53_RS06050 at 1391.527 kb on - strand, within LRK53_RS06050 at 1391.527 kb on - strand, within LRK53_RS06050 at 1391.527 kb on - strand, within LRK53_RS06050 at 1391.527 kb on - strand, within LRK53_RS06050 at 1391.551 kb on - strand, within LRK53_RS06050 at 1391.551 kb on - strand, within LRK53_RS06050 at 1391.551 kb on - strand, within LRK53_RS06050 at 1391.551 kb on - strand, within LRK53_RS06050 at 1391.551 kb on - strand, within LRK53_RS06050 at 1391.551 kb on - strand, within LRK53_RS06050 at 1391.551 kb on - strand, within LRK53_RS06050 at 1391.618 kb on + strand, within LRK53_RS06050 at 1391.618 kb on + strand, within LRK53_RS06050 at 1391.618 kb on + strand, within LRK53_RS06050 at 1391.618 kb on + strand, within LRK53_RS06050 at 1391.618 kb on + strand, within LRK53_RS06050 at 1391.618 kb on + strand, within LRK53_RS06050 at 1391.618 kb on + strand, within LRK53_RS06050 at 1391.618 kb on + strand, within LRK53_RS06050 at 1391.618 kb on + strand, within LRK53_RS06050 at 1391.618 kb on + strand, within LRK53_RS06050 at 1391.618 kb on + strand, within LRK53_RS06050 at 1391.618 kb on + strand, within LRK53_RS06050 at 1391.619 kb on - strand, within LRK53_RS06050 at 1391.619 kb on - strand, within LRK53_RS06050 at 1391.619 kb on - strand, within LRK53_RS06050 at 1391.619 kb on - strand, within LRK53_RS06050 at 1391.619 kb on - strand, within LRK53_RS06050 at 1391.642 kb on + strand, within LRK53_RS06050 at 1391.647 kb on + strand, within LRK53_RS06050 at 1391.647 kb on + strand, within LRK53_RS06050 at 1391.647 kb on + strand, within LRK53_RS06050 at 1391.647 kb on + strand, within LRK53_RS06050 at 1391.647 kb on + strand, within LRK53_RS06050 at 1391.647 kb on + strand, within LRK53_RS06050 at 1391.647 kb on + strand, within LRK53_RS06050 at 1391.647 kb on + strand, within LRK53_RS06050 at 1391.647 kb on + strand, within LRK53_RS06050 at 1391.648 kb on - strand, within LRK53_RS06050 at 1391.648 kb on - strand, within LRK53_RS06050 at 1391.648 kb on - strand, within LRK53_RS06050 at 1391.648 kb on - strand, within LRK53_RS06050 at 1391.648 kb on - strand, within LRK53_RS06050 at 1391.648 kb on - strand, within LRK53_RS06050 at 1391.648 kb on - strand, within LRK53_RS06050 at 1391.744 kb on + strand, within LRK53_RS06050 at 1391.744 kb on + strand, within LRK53_RS06050 at 1391.744 kb on + strand, within LRK53_RS06050 at 1391.745 kb on - strand, within LRK53_RS06050 at 1391.826 kb on + strand, within LRK53_RS06050 at 1391.827 kb on - strand, within LRK53_RS06050 at 1391.888 kb on + strand at 1391.888 kb on + strand at 1391.888 kb on + strand at 1391.888 kb on + strand at 1391.888 kb on + strand at 1391.888 kb on + strand at 1391.888 kb on + strand at 1391.888 kb on + strand at 1391.888 kb on + strand at 1391.888 kb on + strand at 1391.888 kb on + strand at 1391.888 kb on + strand at 1391.888 kb on + strand at 1391.888 kb on + strand at 1391.888 kb on + strand at 1391.889 kb on - strand at 1391.889 kb on - strand at 1391.889 kb on - strand at 1391.889 kb on - strand at 1391.889 kb on - strand at 1391.889 kb on - strand at 1391.889 kb on - strand at 1391.889 kb on - strand at 1391.889 kb on - strand at 1391.889 kb on - strand at 1391.889 kb on - strand at 1391.889 kb on - strand at 1391.889 kb on - strand at 1391.889 kb on - strand at 1391.889 kb on - strand at 1391.889 kb on - strand at 1391.889 kb on - strand at 1391.889 kb on - strand at 1391.889 kb on - strand at 1391.889 kb on - strand at 1391.889 kb on - strand at 1391.889 kb on - strand at 1391.890 kb on + strand at 1391.890 kb on + strand at 1391.890 kb on + strand at 1391.890 kb on + strand at 1391.890 kb on + strand at 1391.890 kb on + strand at 1391.890 kb on + strand at 1391.890 kb on + strand at 1391.890 kb on + strand at 1391.890 kb on + strand at 1391.890 kb on + strand at 1391.890 kb on + strand at 1391.890 kb on + strand at 1391.890 kb on + strand at 1391.891 kb on - strand at 1391.891 kb on - strand at 1391.891 kb on - strand at 1391.891 kb on - strand at 1391.891 kb on - strand at 1391.891 kb on - strand at 1391.891 kb on - strand at 1391.891 kb on - strand at 1392.168 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES no stress control remove 1,390,215 + LRK53_RS06030 0.89 -0.1 1,390,215 + LRK53_RS06030 0.89 -0.6 1,390,215 + LRK53_RS06030 0.89 -0.8 1,390,215 + LRK53_RS06030 0.89 -1.1 1,390,215 + LRK53_RS06030 0.89 +1.9 1,390,215 + LRK53_RS06030 0.89 -1.1 1,390,216 - LRK53_RS06030 0.89 +0.4 1,390,216 - LRK53_RS06030 0.89 -0.1 1,390,216 - LRK53_RS06030 0.89 -2.2 1,390,216 - LRK53_RS06030 0.89 +0.6 1,390,509 + LRK53_RS06035 0.46 -0.1 1,390,541 - LRK53_RS06035 0.53 -0.6 1,390,541 - LRK53_RS06035 0.53 +0.4 1,390,541 - LRK53_RS06035 0.53 +0.9 1,390,541 - LRK53_RS06035 0.53 -0.4 1,390,721 + -1.6 1,390,721 + +0.9 1,390,723 + -0.6 1,390,724 - +0.2 1,390,724 - -2.1 1,390,751 + +0.9 1,390,751 + -0.1 1,390,751 + -2.2 1,390,751 + +0.2 1,390,751 + -0.6 1,390,751 + -1.4 1,390,752 - -0.8 1,390,956 + LRK53_RS06040 0.38 -1.5 1,390,956 + LRK53_RS06040 0.38 -2.5 1,390,956 + LRK53_RS06040 0.38 +0.9 1,390,956 + LRK53_RS06040 0.38 -0.1 1,390,956 + LRK53_RS06040 0.38 -1.6 1,390,956 + LRK53_RS06040 0.38 -1.1 1,390,956 + LRK53_RS06040 0.38 -1.1 1,390,956 + LRK53_RS06040 0.38 -0.6 1,390,956 + LRK53_RS06040 0.38 -0.1 1,390,956 + LRK53_RS06040 0.38 -0.9 1,390,956 + LRK53_RS06040 0.38 +0.9 1,390,956 + LRK53_RS06040 0.38 -1.4 1,390,956 + LRK53_RS06040 0.38 -0.6 1,390,956 + LRK53_RS06040 0.38 -2.1 1,390,956 + LRK53_RS06040 0.38 -1.4 1,390,956 + LRK53_RS06040 0.38 +0.9 1,390,956 + LRK53_RS06040 0.38 -2.0 1,390,956 + LRK53_RS06040 0.38 -0.1 1,390,956 + LRK53_RS06040 0.38 +0.9 1,390,956 + LRK53_RS06040 0.38 -0.2 1,390,956 + LRK53_RS06040 0.38 -0.4 1,390,956 + LRK53_RS06040 0.38 -0.6 1,390,956 + LRK53_RS06040 0.38 +0.9 1,390,956 + LRK53_RS06040 0.38 -1.4 1,390,957 - LRK53_RS06040 0.38 -1.1 1,390,957 - LRK53_RS06040 0.38 -0.5 1,390,957 - LRK53_RS06040 0.38 -0.1 1,390,957 - LRK53_RS06040 0.38 -0.6 1,390,957 - LRK53_RS06040 0.38 +1.9 1,390,957 - LRK53_RS06040 0.38 -0.3 1,390,957 - LRK53_RS06040 0.38 -0.1 1,390,957 - LRK53_RS06040 0.38 -0.3 1,390,957 - LRK53_RS06040 0.38 -0.4 1,390,957 - LRK53_RS06040 0.38 -0.3 1,390,957 - LRK53_RS06040 0.38 -0.6 1,390,957 - LRK53_RS06040 0.38 -0.3 1,390,957 - LRK53_RS06040 0.38 -0.3 1,390,957 - LRK53_RS06040 0.38 -0.9 1,390,957 - LRK53_RS06040 0.38 -1.1 1,390,957 - LRK53_RS06040 0.38 -0.6 1,390,957 - LRK53_RS06040 0.38 -1.2 1,390,957 - LRK53_RS06040 0.38 -1.3 1,390,978 + LRK53_RS06040 0.47 -0.7 1,390,978 + LRK53_RS06040 0.47 -0.8 1,390,978 + LRK53_RS06040 0.47 -0.1 1,390,979 - LRK53_RS06040 0.47 -1.1 1,390,979 - LRK53_RS06040 0.47 -2.2 1,391,177 + +0.9 1,391,177 + -0.1 1,391,177 + -0.6 1,391,178 - -0.6 1,391,183 + +0.9 1,391,183 + -1.1 1,391,183 + -1.2 1,391,183 + -0.3 1,391,183 + -1.2 1,391,183 + -1.1 1,391,183 + -0.6 1,391,183 + -0.1 1,391,183 + +1.5 1,391,183 + +1.4 1,391,183 + -0.9 1,391,184 - -1.4 1,391,184 - +0.4 1,391,184 - +0.9 1,391,184 - -2.1 1,391,204 + LRK53_RS06045 0.21 -1.8 1,391,204 + LRK53_RS06045 0.21 -0.4 1,391,204 + LRK53_RS06045 0.21 -3.7 1,391,204 + LRK53_RS06045 0.21 -1.1 1,391,204 + LRK53_RS06045 0.21 +0.5 1,391,204 + LRK53_RS06045 0.21 +0.9 1,391,204 + LRK53_RS06045 0.21 -1.1 1,391,205 - LRK53_RS06045 0.21 +0.4 1,391,205 - LRK53_RS06045 0.21 -1.6 1,391,205 - LRK53_RS06045 0.21 +0.9 1,391,205 - LRK53_RS06045 0.21 -0.9 1,391,205 - LRK53_RS06045 0.21 -0.9 1,391,205 - LRK53_RS06045 0.21 -1.6 1,391,347 + -1.6 1,391,347 + -1.6 1,391,347 + -0.1 1,391,347 + -0.1 1,391,348 - +0.1 1,391,348 - -1.6 1,391,348 - -1.2 1,391,526 + LRK53_RS06050 0.12 -0.3 1,391,526 + LRK53_RS06050 0.12 -1.4 1,391,526 + LRK53_RS06050 0.12 -0.4 1,391,526 + LRK53_RS06050 0.12 -1.1 1,391,526 + LRK53_RS06050 0.12 -0.1 1,391,527 - LRK53_RS06050 0.12 +0.4 1,391,527 - LRK53_RS06050 0.12 -1.1 1,391,527 - LRK53_RS06050 0.12 -0.4 1,391,527 - LRK53_RS06050 0.12 -1.6 1,391,527 - LRK53_RS06050 0.12 -0.1 1,391,527 - LRK53_RS06050 0.12 +0.4 1,391,527 - LRK53_RS06050 0.12 -0.6 1,391,527 - LRK53_RS06050 0.12 +1.5 1,391,527 - LRK53_RS06050 0.12 -0.6 1,391,551 - LRK53_RS06050 0.18 -0.1 1,391,551 - LRK53_RS06050 0.18 -1.2 1,391,551 - LRK53_RS06050 0.18 -0.1 1,391,551 - LRK53_RS06050 0.18 +0.4 1,391,551 - LRK53_RS06050 0.18 -1.1 1,391,551 - LRK53_RS06050 0.18 -0.4 1,391,551 - LRK53_RS06050 0.18 +0.9 1,391,618 + LRK53_RS06050 0.36 -2.0 1,391,618 + LRK53_RS06050 0.36 +0.9 1,391,618 + LRK53_RS06050 0.36 -0.8 1,391,618 + LRK53_RS06050 0.36 -0.7 1,391,618 + LRK53_RS06050 0.36 -0.1 1,391,618 + LRK53_RS06050 0.36 +0.2 1,391,618 + LRK53_RS06050 0.36 -1.6 1,391,618 + LRK53_RS06050 0.36 -0.1 1,391,618 + LRK53_RS06050 0.36 -1.6 1,391,618 + LRK53_RS06050 0.36 -1.2 1,391,618 + LRK53_RS06050 0.36 -1.6 1,391,618 + LRK53_RS06050 0.36 +0.0 1,391,619 - LRK53_RS06050 0.36 -1.1 1,391,619 - LRK53_RS06050 0.36 +0.2 1,391,619 - LRK53_RS06050 0.36 -0.6 1,391,619 - LRK53_RS06050 0.36 -1.1 1,391,619 - LRK53_RS06050 0.36 -0.1 1,391,642 + LRK53_RS06050 0.42 -1.4 1,391,647 + LRK53_RS06050 0.43 -0.1 1,391,647 + LRK53_RS06050 0.43 -1.6 1,391,647 + LRK53_RS06050 0.43 -2.1 1,391,647 + LRK53_RS06050 0.43 -0.9 1,391,647 + LRK53_RS06050 0.43 +0.9 1,391,647 + LRK53_RS06050 0.43 +0.7 1,391,647 + LRK53_RS06050 0.43 -0.3 1,391,647 + LRK53_RS06050 0.43 -1.1 1,391,647 + LRK53_RS06050 0.43 -0.8 1,391,648 - LRK53_RS06050 0.43 +0.5 1,391,648 - LRK53_RS06050 0.43 -1.4 1,391,648 - LRK53_RS06050 0.43 -0.1 1,391,648 - LRK53_RS06050 0.43 -1.6 1,391,648 - LRK53_RS06050 0.43 -0.4 1,391,648 - LRK53_RS06050 0.43 -1.9 1,391,648 - LRK53_RS06050 0.43 -0.6 1,391,744 + LRK53_RS06050 0.68 +0.5 1,391,744 + LRK53_RS06050 0.68 -1.0 1,391,744 + LRK53_RS06050 0.68 -1.0 1,391,745 - LRK53_RS06050 0.68 -0.1 1,391,826 + LRK53_RS06050 0.89 -1.1 1,391,827 - LRK53_RS06050 0.90 -1.1 1,391,888 + -2.2 1,391,888 + -2.5 1,391,888 + +2.5 1,391,888 + +0.2 1,391,888 + -1.6 1,391,888 + -1.1 1,391,888 + -1.2 1,391,888 + -2.4 1,391,888 + -0.9 1,391,888 + +0.4 1,391,888 + -1.6 1,391,888 + -0.1 1,391,888 + -0.4 1,391,888 + -0.5 1,391,888 + -1.9 1,391,889 - -0.1 1,391,889 - -0.1 1,391,889 - -1.8 1,391,889 - -1.5 1,391,889 - +0.1 1,391,889 - -0.8 1,391,889 - -0.9 1,391,889 - -0.8 1,391,889 - -0.6 1,391,889 - -0.6 1,391,889 - -0.6 1,391,889 - -0.6 1,391,889 - +0.9 1,391,889 - -2.6 1,391,889 - +0.9 1,391,889 - +0.5 1,391,889 - -1.4 1,391,889 - +0.9 1,391,889 - -0.6 1,391,889 - -0.4 1,391,889 - -0.1 1,391,889 - -0.1 1,391,890 + -1.1 1,391,890 + -0.6 1,391,890 + +0.9 1,391,890 + +0.5 1,391,890 + -0.1 1,391,890 + -0.5 1,391,890 + -0.3 1,391,890 + +0.9 1,391,890 + -1.1 1,391,890 + -0.5 1,391,890 + -1.9 1,391,890 + -1.7 1,391,890 + -1.1 1,391,890 + -0.6 1,391,891 - -1.2 1,391,891 - -0.8 1,391,891 - -0.1 1,391,891 - +0.9 1,391,891 - -1.4 1,391,891 - -0.5 1,391,891 - -1.4 1,391,891 - -0.6 1,392,168 + -0.4
Or see this region's nucleotide sequence