Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS18780

Experiment: R2A_PIPES no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS18770 and LRK53_RS18775 are separated by 92 nucleotidesLRK53_RS18775 and LRK53_RS18780 overlap by 4 nucleotidesLRK53_RS18780 and LRK53_RS18785 are separated by 2 nucleotides LRK53_RS18770: LRK53_RS18770 - hypothetical protein, at 143,910 to 144,467 _RS18770 LRK53_RS18775: LRK53_RS18775 - hypothetical protein, at 144,560 to 145,018 _RS18775 LRK53_RS18780: LRK53_RS18780 - hypothetical protein, at 145,015 to 145,809 _RS18780 LRK53_RS18785: LRK53_RS18785 - conjugal transfer protein TraN, at 145,812 to 147,209 _RS18785 Position (kb) 145 146Strain fitness (log2 ratio) -3 -2 -1 0 1at 144.324 kb on + strand, within LRK53_RS18770at 144.324 kb on + strand, within LRK53_RS18770at 144.325 kb on - strand, within LRK53_RS18770at 144.325 kb on - strand, within LRK53_RS18770at 144.508 kb on + strandat 144.669 kb on - strand, within LRK53_RS18775at 144.834 kb on + strand, within LRK53_RS18775at 144.834 kb on + strand, within LRK53_RS18775at 144.834 kb on + strand, within LRK53_RS18775at 144.834 kb on + strand, within LRK53_RS18775at 144.834 kb on + strand, within LRK53_RS18775at 144.835 kb on - strand, within LRK53_RS18775at 144.835 kb on - strand, within LRK53_RS18775at 144.835 kb on - strand, within LRK53_RS18775at 144.835 kb on - strand, within LRK53_RS18775at 144.835 kb on - strand, within LRK53_RS18775at 144.835 kb on - strand, within LRK53_RS18775at 144.835 kb on - strand, within LRK53_RS18775at 144.835 kb on - strand, within LRK53_RS18775at 144.869 kb on + strand, within LRK53_RS18775at 144.869 kb on + strand, within LRK53_RS18775at 144.870 kb on - strand, within LRK53_RS18775at 144.927 kb on - strand, within LRK53_RS18775at 145.148 kb on + strand, within LRK53_RS18780at 145.148 kb on + strand, within LRK53_RS18780at 145.148 kb on + strand, within LRK53_RS18780at 145.148 kb on + strand, within LRK53_RS18780at 145.149 kb on - strand, within LRK53_RS18780at 145.277 kb on + strand, within LRK53_RS18780at 145.349 kb on + strand, within LRK53_RS18780at 145.349 kb on + strand, within LRK53_RS18780at 145.380 kb on + strand, within LRK53_RS18780at 145.406 kb on + strand, within LRK53_RS18780at 145.406 kb on + strand, within LRK53_RS18780at 145.406 kb on + strand, within LRK53_RS18780at 145.406 kb on + strand, within LRK53_RS18780at 145.406 kb on + strand, within LRK53_RS18780at 145.407 kb on - strand, within LRK53_RS18780at 145.523 kb on + strand, within LRK53_RS18780at 145.523 kb on + strand, within LRK53_RS18780at 145.523 kb on + strand, within LRK53_RS18780at 145.523 kb on + strand, within LRK53_RS18780at 145.524 kb on - strand, within LRK53_RS18780at 145.524 kb on - strand, within LRK53_RS18780at 145.524 kb on - strand, within LRK53_RS18780at 145.524 kb on - strand, within LRK53_RS18780at 145.847 kb on + strandat 145.847 kb on + strandat 145.847 kb on + strandat 145.847 kb on + strandat 145.848 kb on - strandat 145.849 kb on + strandat 145.850 kb on - strandat 145.975 kb on + strand, within LRK53_RS18785at 145.999 kb on + strand, within LRK53_RS18785at 145.999 kb on + strand, within LRK53_RS18785at 145.999 kb on + strand, within LRK53_RS18785at 146.000 kb on - strand, within LRK53_RS18785at 146.000 kb on - strand, within LRK53_RS18785at 146.000 kb on - strand, within LRK53_RS18785at 146.000 kb on - strand, within LRK53_RS18785at 146.113 kb on + strand, within LRK53_RS18785at 146.113 kb on + strand, within LRK53_RS18785at 146.284 kb on + strand, within LRK53_RS18785at 146.284 kb on + strand, within LRK53_RS18785at 146.284 kb on + strand, within LRK53_RS18785at 146.284 kb on + strand, within LRK53_RS18785at 146.285 kb on - strand, within LRK53_RS18785at 146.285 kb on - strand, within LRK53_RS18785at 146.285 kb on - strand, within LRK53_RS18785at 146.285 kb on - strand, within LRK53_RS18785at 146.285 kb on - strand, within LRK53_RS18785at 146.285 kb on - strand, within LRK53_RS18785at 146.305 kb on + strand, within LRK53_RS18785at 146.305 kb on + strand, within LRK53_RS18785at 146.306 kb on - strand, within LRK53_RS18785at 146.306 kb on - strand, within LRK53_RS18785at 146.306 kb on - strand, within LRK53_RS18785at 146.516 kb on + strand, within LRK53_RS18785at 146.517 kb on - strand, within LRK53_RS18785at 146.517 kb on - strand, within LRK53_RS18785at 146.536 kb on + strand, within LRK53_RS18785at 146.536 kb on + strand, within LRK53_RS18785at 146.536 kb on + strand, within LRK53_RS18785at 146.537 kb on - strand, within LRK53_RS18785at 146.537 kb on - strand, within LRK53_RS18785at 146.537 kb on - strand, within LRK53_RS18785at 146.537 kb on - strand, within LRK53_RS18785at 146.537 kb on - strand, within LRK53_RS18785at 146.537 kb on - strand, within LRK53_RS18785at 146.537 kb on - strand, within LRK53_RS18785at 146.537 kb on - strand, within LRK53_RS18785at 146.537 kb on - strand, within LRK53_RS18785at 146.596 kb on + strand, within LRK53_RS18785at 146.596 kb on + strand, within LRK53_RS18785at 146.653 kb on + strand, within LRK53_RS18785

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES no stress control
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144,324 + LRK53_RS18770 0.74 -0.5
144,324 + LRK53_RS18770 0.74 -2.2
144,325 - LRK53_RS18770 0.74 -1.9
144,325 - LRK53_RS18770 0.74 -1.2
144,508 + +0.3
144,669 - LRK53_RS18775 0.24 -0.5
144,834 + LRK53_RS18775 0.60 -0.3
144,834 + LRK53_RS18775 0.60 -1.9
144,834 + LRK53_RS18775 0.60 -0.5
144,834 + LRK53_RS18775 0.60 -0.8
144,834 + LRK53_RS18775 0.60 -2.1
144,835 - LRK53_RS18775 0.60 -0.5
144,835 - LRK53_RS18775 0.60 +1.1
144,835 - LRK53_RS18775 0.60 -1.2
144,835 - LRK53_RS18775 0.60 -0.9
144,835 - LRK53_RS18775 0.60 -0.6
144,835 - LRK53_RS18775 0.60 -2.7
144,835 - LRK53_RS18775 0.60 -1.1
144,835 - LRK53_RS18775 0.60 +0.1
144,869 + LRK53_RS18775 0.67 -0.3
144,869 + LRK53_RS18775 0.67 +1.1
144,870 - LRK53_RS18775 0.68 +0.4
144,927 - LRK53_RS18775 0.80 -0.5
145,148 + LRK53_RS18780 0.17 -1.5
145,148 + LRK53_RS18780 0.17 -0.5
145,148 + LRK53_RS18780 0.17 +0.1
145,148 + LRK53_RS18780 0.17 -0.9
145,149 - LRK53_RS18780 0.17 -2.1
145,277 + LRK53_RS18780 0.33 -2.1
145,349 + LRK53_RS18780 0.42 -1.9
145,349 + LRK53_RS18780 0.42 +0.1
145,380 + LRK53_RS18780 0.46 -0.6
145,406 + LRK53_RS18780 0.49 -1.5
145,406 + LRK53_RS18780 0.49 -0.9
145,406 + LRK53_RS18780 0.49 -0.2
145,406 + LRK53_RS18780 0.49 -2.3
145,406 + LRK53_RS18780 0.49 -1.1
145,407 - LRK53_RS18780 0.49 -2.2
145,523 + LRK53_RS18780 0.64 -1.7
145,523 + LRK53_RS18780 0.64 -0.4
145,523 + LRK53_RS18780 0.64 -0.3
145,523 + LRK53_RS18780 0.64 -1.6
145,524 - LRK53_RS18780 0.64 -2.2
145,524 - LRK53_RS18780 0.64 -0.5
145,524 - LRK53_RS18780 0.64 -1.0
145,524 - LRK53_RS18780 0.64 +0.1
145,847 + +0.5
145,847 + -1.0
145,847 + -1.1
145,847 + +0.1
145,848 - -1.0
145,849 + -1.8
145,850 - -1.2
145,975 + LRK53_RS18785 0.12 -2.3
145,999 + LRK53_RS18785 0.13 -3.1
145,999 + LRK53_RS18785 0.13 +0.4
145,999 + LRK53_RS18785 0.13 -0.9
146,000 - LRK53_RS18785 0.13 -0.7
146,000 - LRK53_RS18785 0.13 +0.1
146,000 - LRK53_RS18785 0.13 +0.1
146,000 - LRK53_RS18785 0.13 +1.1
146,113 + LRK53_RS18785 0.22 -0.6
146,113 + LRK53_RS18785 0.22 -0.5
146,284 + LRK53_RS18785 0.34 -0.9
146,284 + LRK53_RS18785 0.34 -0.9
146,284 + LRK53_RS18785 0.34 -2.2
146,284 + LRK53_RS18785 0.34 -1.5
146,285 - LRK53_RS18785 0.34 -1.5
146,285 - LRK53_RS18785 0.34 +0.3
146,285 - LRK53_RS18785 0.34 -1.2
146,285 - LRK53_RS18785 0.34 +0.1
146,285 - LRK53_RS18785 0.34 -2.6
146,285 - LRK53_RS18785 0.34 +0.1
146,305 + LRK53_RS18785 0.35 -1.5
146,305 + LRK53_RS18785 0.35 -0.5
146,306 - LRK53_RS18785 0.35 -1.2
146,306 - LRK53_RS18785 0.35 -1.5
146,306 - LRK53_RS18785 0.35 -1.1
146,516 + LRK53_RS18785 0.50 -1.2
146,517 - LRK53_RS18785 0.50 -1.9
146,517 - LRK53_RS18785 0.50 -1.2
146,536 + LRK53_RS18785 0.52 -0.5
146,536 + LRK53_RS18785 0.52 -0.4
146,536 + LRK53_RS18785 0.52 +1.3
146,537 - LRK53_RS18785 0.52 -3.1
146,537 - LRK53_RS18785 0.52 +0.1
146,537 - LRK53_RS18785 0.52 -1.6
146,537 - LRK53_RS18785 0.52 -0.2
146,537 - LRK53_RS18785 0.52 -0.2
146,537 - LRK53_RS18785 0.52 +1.1
146,537 - LRK53_RS18785 0.52 -0.1
146,537 - LRK53_RS18785 0.52 -0.9
146,537 - LRK53_RS18785 0.52 +0.5
146,596 + LRK53_RS18785 0.56 -1.9
146,596 + LRK53_RS18785 0.56 -0.2
146,653 + LRK53_RS18785 0.60 +1.5

Or see this region's nucleotide sequence