Experiment: R2A_PIPES no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS05920 and LRK53_RS05925 overlap by 4 nucleotides LRK53_RS05925 and LRK53_RS05930 are separated by 124 nucleotides LRK53_RS05930 and LRK53_RS05935 are separated by 360 nucleotides
LRK53_RS05920: LRK53_RS05920 - dephospho-CoA kinase, at 1,368,877 to 1,369,497
_RS05920
LRK53_RS05925: LRK53_RS05925 - A24 family peptidase, at 1,369,494 to 1,370,351
_RS05925
LRK53_RS05930: LRK53_RS05930 - endonuclease domain-containing protein, at 1,370,476 to 1,370,754
_RS05930
LRK53_RS05935: LRK53_RS05935 - type II secretion system F family protein, at 1,371,115 to 1,372,386
_RS05935
Position (kb) 1370
1371 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1369.519 kb on + strand at 1369.519 kb on + strand at 1369.519 kb on + strand at 1369.519 kb on + strand at 1369.519 kb on + strand at 1369.519 kb on + strand at 1369.519 kb on + strand at 1369.519 kb on + strand at 1369.519 kb on + strand at 1369.519 kb on + strand at 1369.519 kb on + strand at 1369.519 kb on + strand at 1369.519 kb on + strand at 1369.520 kb on - strand at 1369.520 kb on - strand at 1369.520 kb on - strand at 1369.520 kb on - strand at 1369.520 kb on - strand at 1369.520 kb on - strand at 1369.520 kb on - strand at 1369.777 kb on + strand, within LRK53_RS05925 at 1369.777 kb on + strand, within LRK53_RS05925 at 1369.777 kb on + strand, within LRK53_RS05925 at 1369.777 kb on + strand, within LRK53_RS05925 at 1369.778 kb on - strand, within LRK53_RS05925 at 1369.778 kb on - strand, within LRK53_RS05925 at 1369.798 kb on + strand, within LRK53_RS05925 at 1370.045 kb on - strand, within LRK53_RS05925 at 1370.071 kb on + strand, within LRK53_RS05925 at 1370.112 kb on + strand, within LRK53_RS05925 at 1370.112 kb on + strand, within LRK53_RS05925 at 1370.112 kb on + strand, within LRK53_RS05925 at 1370.112 kb on + strand, within LRK53_RS05925 at 1370.112 kb on + strand, within LRK53_RS05925 at 1370.112 kb on + strand, within LRK53_RS05925 at 1370.112 kb on + strand, within LRK53_RS05925 at 1370.112 kb on + strand, within LRK53_RS05925 at 1370.112 kb on + strand, within LRK53_RS05925 at 1370.112 kb on + strand, within LRK53_RS05925 at 1370.112 kb on + strand, within LRK53_RS05925 at 1370.112 kb on + strand, within LRK53_RS05925 at 1370.112 kb on + strand, within LRK53_RS05925 at 1370.112 kb on + strand, within LRK53_RS05925 at 1370.112 kb on + strand, within LRK53_RS05925 at 1370.112 kb on + strand, within LRK53_RS05925 at 1370.112 kb on + strand, within LRK53_RS05925 at 1370.112 kb on + strand, within LRK53_RS05925 at 1370.112 kb on + strand, within LRK53_RS05925 at 1370.112 kb on + strand, within LRK53_RS05925 at 1370.112 kb on + strand, within LRK53_RS05925 at 1370.112 kb on + strand, within LRK53_RS05925 at 1370.112 kb on + strand, within LRK53_RS05925 at 1370.113 kb on - strand, within LRK53_RS05925 at 1370.113 kb on - strand, within LRK53_RS05925 at 1370.113 kb on - strand, within LRK53_RS05925 at 1370.113 kb on - strand, within LRK53_RS05925 at 1370.113 kb on - strand, within LRK53_RS05925 at 1370.113 kb on - strand, within LRK53_RS05925 at 1370.113 kb on - strand, within LRK53_RS05925 at 1370.113 kb on - strand, within LRK53_RS05925 at 1370.113 kb on - strand, within LRK53_RS05925 at 1370.113 kb on - strand, within LRK53_RS05925 at 1370.113 kb on - strand, within LRK53_RS05925 at 1370.113 kb on - strand, within LRK53_RS05925 at 1370.113 kb on - strand, within LRK53_RS05925 at 1370.113 kb on - strand, within LRK53_RS05925 at 1370.113 kb on - strand, within LRK53_RS05925 at 1370.307 kb on + strand at 1370.308 kb on - strand at 1370.403 kb on + strand at 1370.404 kb on - strand at 1370.585 kb on + strand, within LRK53_RS05930 at 1370.585 kb on + strand, within LRK53_RS05930 at 1370.585 kb on + strand, within LRK53_RS05930 at 1370.585 kb on + strand, within LRK53_RS05930 at 1370.585 kb on + strand, within LRK53_RS05930 at 1370.586 kb on - strand, within LRK53_RS05930 at 1370.586 kb on - strand, within LRK53_RS05930 at 1370.586 kb on - strand, within LRK53_RS05930 at 1370.586 kb on - strand, within LRK53_RS05930 at 1370.601 kb on - strand, within LRK53_RS05930 at 1370.663 kb on + strand, within LRK53_RS05930 at 1370.663 kb on + strand, within LRK53_RS05930 at 1370.664 kb on - strand, within LRK53_RS05930 at 1370.716 kb on - strand, within LRK53_RS05930 at 1370.716 kb on - strand, within LRK53_RS05930 at 1370.716 kb on - strand, within LRK53_RS05930 at 1370.716 kb on - strand, within LRK53_RS05930 at 1370.735 kb on - strand at 1370.766 kb on - strand at 1370.766 kb on - strand at 1371.149 kb on + strand at 1371.149 kb on + strand at 1371.149 kb on + strand at 1371.149 kb on + strand at 1371.149 kb on + strand at 1371.149 kb on + strand at 1371.149 kb on + strand at 1371.149 kb on + strand at 1371.150 kb on - strand at 1371.150 kb on - strand at 1371.150 kb on - strand at 1371.150 kb on - strand at 1371.150 kb on - strand at 1371.150 kb on - strand at 1371.150 kb on - strand at 1371.157 kb on + strand at 1371.158 kb on - strand at 1371.254 kb on + strand, within LRK53_RS05935 at 1371.254 kb on + strand, within LRK53_RS05935 at 1371.254 kb on + strand, within LRK53_RS05935 at 1371.419 kb on + strand, within LRK53_RS05935 at 1371.419 kb on + strand, within LRK53_RS05935 at 1371.419 kb on + strand, within LRK53_RS05935 at 1371.419 kb on + strand, within LRK53_RS05935 at 1371.419 kb on + strand, within LRK53_RS05935 at 1371.419 kb on + strand, within LRK53_RS05935 at 1371.420 kb on - strand, within LRK53_RS05935 at 1371.420 kb on - strand, within LRK53_RS05935 at 1371.420 kb on - strand, within LRK53_RS05935 at 1371.662 kb on + strand, within LRK53_RS05935 at 1371.662 kb on + strand, within LRK53_RS05935 at 1371.662 kb on + strand, within LRK53_RS05935 at 1371.662 kb on + strand, within LRK53_RS05935 at 1371.662 kb on + strand, within LRK53_RS05935 at 1371.662 kb on + strand, within LRK53_RS05935 at 1371.662 kb on + strand, within LRK53_RS05935 at 1371.663 kb on - strand, within LRK53_RS05935 at 1371.663 kb on - strand, within LRK53_RS05935 at 1371.663 kb on - strand, within LRK53_RS05935 at 1371.663 kb on - strand, within LRK53_RS05935 at 1371.663 kb on - strand, within LRK53_RS05935 at 1371.663 kb on - strand, within LRK53_RS05935
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES no stress control remove 1,369,519 + -0.6 1,369,519 + -1.4 1,369,519 + +0.2 1,369,519 + +0.9 1,369,519 + +0.9 1,369,519 + -2.1 1,369,519 + -0.1 1,369,519 + -0.8 1,369,519 + +0.9 1,369,519 + -0.1 1,369,519 + +0.9 1,369,519 + +0.8 1,369,519 + -0.5 1,369,520 - +0.2 1,369,520 - -0.6 1,369,520 - +0.4 1,369,520 - -0.6 1,369,520 - +0.9 1,369,520 - -2.1 1,369,520 - -0.3 1,369,777 + LRK53_RS05925 0.33 -0.6 1,369,777 + LRK53_RS05925 0.33 -0.1 1,369,777 + LRK53_RS05925 0.33 +0.9 1,369,777 + LRK53_RS05925 0.33 -0.3 1,369,778 - LRK53_RS05925 0.33 -1.4 1,369,778 - LRK53_RS05925 0.33 +0.4 1,369,798 + LRK53_RS05925 0.35 -2.4 1,370,045 - LRK53_RS05925 0.64 -1.4 1,370,071 + LRK53_RS05925 0.67 -0.1 1,370,112 + LRK53_RS05925 0.72 +0.4 1,370,112 + LRK53_RS05925 0.72 +0.9 1,370,112 + LRK53_RS05925 0.72 -0.1 1,370,112 + LRK53_RS05925 0.72 +1.9 1,370,112 + LRK53_RS05925 0.72 -0.9 1,370,112 + LRK53_RS05925 0.72 -0.1 1,370,112 + LRK53_RS05925 0.72 -1.9 1,370,112 + LRK53_RS05925 0.72 +0.5 1,370,112 + LRK53_RS05925 0.72 +2.5 1,370,112 + LRK53_RS05925 0.72 +0.9 1,370,112 + LRK53_RS05925 0.72 +0.9 1,370,112 + LRK53_RS05925 0.72 -0.6 1,370,112 + LRK53_RS05925 0.72 -0.7 1,370,112 + LRK53_RS05925 0.72 -0.6 1,370,112 + LRK53_RS05925 0.72 -0.6 1,370,112 + LRK53_RS05925 0.72 -1.2 1,370,112 + LRK53_RS05925 0.72 -0.8 1,370,112 + LRK53_RS05925 0.72 -0.1 1,370,112 + LRK53_RS05925 0.72 -0.6 1,370,112 + LRK53_RS05925 0.72 -0.6 1,370,112 + LRK53_RS05925 0.72 -0.1 1,370,112 + LRK53_RS05925 0.72 -1.4 1,370,112 + LRK53_RS05925 0.72 -1.2 1,370,113 - LRK53_RS05925 0.72 +0.0 1,370,113 - LRK53_RS05925 0.72 -1.4 1,370,113 - LRK53_RS05925 0.72 -0.1 1,370,113 - LRK53_RS05925 0.72 +1.9 1,370,113 - LRK53_RS05925 0.72 -0.1 1,370,113 - LRK53_RS05925 0.72 -0.5 1,370,113 - LRK53_RS05925 0.72 -0.6 1,370,113 - LRK53_RS05925 0.72 -0.6 1,370,113 - LRK53_RS05925 0.72 -1.4 1,370,113 - LRK53_RS05925 0.72 -0.6 1,370,113 - LRK53_RS05925 0.72 -0.1 1,370,113 - LRK53_RS05925 0.72 -1.1 1,370,113 - LRK53_RS05925 0.72 -0.8 1,370,113 - LRK53_RS05925 0.72 +0.9 1,370,113 - LRK53_RS05925 0.72 +0.4 1,370,307 + +0.5 1,370,308 - -0.1 1,370,403 + -2.4 1,370,404 - -0.6 1,370,585 + LRK53_RS05930 0.39 -0.6 1,370,585 + LRK53_RS05930 0.39 -0.6 1,370,585 + LRK53_RS05930 0.39 +0.9 1,370,585 + LRK53_RS05930 0.39 -1.1 1,370,585 + LRK53_RS05930 0.39 -2.1 1,370,586 - LRK53_RS05930 0.39 -0.6 1,370,586 - LRK53_RS05930 0.39 +0.9 1,370,586 - LRK53_RS05930 0.39 +0.9 1,370,586 - LRK53_RS05930 0.39 -0.6 1,370,601 - LRK53_RS05930 0.45 -0.6 1,370,663 + LRK53_RS05930 0.67 -0.1 1,370,663 + LRK53_RS05930 0.67 -0.1 1,370,664 - LRK53_RS05930 0.67 -1.2 1,370,716 - LRK53_RS05930 0.86 +0.9 1,370,716 - LRK53_RS05930 0.86 -0.4 1,370,716 - LRK53_RS05930 0.86 -3.0 1,370,716 - LRK53_RS05930 0.86 -0.1 1,370,735 - -0.5 1,370,766 - -2.2 1,370,766 - -1.4 1,371,149 + -2.4 1,371,149 + -1.6 1,371,149 + -0.1 1,371,149 + -0.6 1,371,149 + +1.9 1,371,149 + -0.2 1,371,149 + -0.6 1,371,149 + -0.5 1,371,150 - +2.9 1,371,150 - +0.9 1,371,150 - -0.1 1,371,150 - -0.3 1,371,150 - -1.5 1,371,150 - +0.1 1,371,150 - -0.1 1,371,157 + -0.1 1,371,158 - -2.0 1,371,254 + LRK53_RS05935 0.11 -1.2 1,371,254 + LRK53_RS05935 0.11 +1.9 1,371,254 + LRK53_RS05935 0.11 -1.0 1,371,419 + LRK53_RS05935 0.24 -0.2 1,371,419 + LRK53_RS05935 0.24 -0.1 1,371,419 + LRK53_RS05935 0.24 -0.1 1,371,419 + LRK53_RS05935 0.24 -0.4 1,371,419 + LRK53_RS05935 0.24 -2.2 1,371,419 + LRK53_RS05935 0.24 -0.1 1,371,420 - LRK53_RS05935 0.24 -0.8 1,371,420 - LRK53_RS05935 0.24 +0.2 1,371,420 - LRK53_RS05935 0.24 -1.4 1,371,662 + LRK53_RS05935 0.43 -0.1 1,371,662 + LRK53_RS05935 0.43 -0.1 1,371,662 + LRK53_RS05935 0.43 -0.1 1,371,662 + LRK53_RS05935 0.43 -0.4 1,371,662 + LRK53_RS05935 0.43 -0.7 1,371,662 + LRK53_RS05935 0.43 -1.6 1,371,662 + LRK53_RS05935 0.43 -0.6 1,371,663 - LRK53_RS05935 0.43 +0.9 1,371,663 - LRK53_RS05935 0.43 -0.6 1,371,663 - LRK53_RS05935 0.43 -1.1 1,371,663 - LRK53_RS05935 0.43 -0.1 1,371,663 - LRK53_RS05935 0.43 +0.9 1,371,663 - LRK53_RS05935 0.43 -1.1
Or see this region's nucleotide sequence