Experiment: R2A_PIPES no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS05130 and LRK53_RS05135 overlap by 8 nucleotides LRK53_RS05135 and LRK53_RS05140 are separated by 18 nucleotides LRK53_RS05140 and LRK53_RS05145 are separated by 13 nucleotides
LRK53_RS05130: LRK53_RS05130 - Holliday junction branch migration DNA helicase RuvB, at 1,207,662 to 1,208,711
_RS05130
LRK53_RS05135: LRK53_RS05135 - tol-pal system-associated acyl-CoA thioesterase, at 1,208,704 to 1,209,141
_RS05135
LRK53_RS05140: LRK53_RS05140 - protein TolQ, at 1,209,160 to 1,209,846
_RS05140
LRK53_RS05145: LRK53_RS05145 - protein TolR, at 1,209,860 to 1,210,324
_RS05145
Position (kb)
1208
1209
1210 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1208.744 kb on + strand at 1208.744 kb on + strand at 1208.744 kb on + strand at 1208.744 kb on + strand at 1208.744 kb on + strand at 1208.745 kb on - strand at 1208.745 kb on - strand at 1208.745 kb on - strand at 1208.745 kb on - strand at 1208.745 kb on - strand at 1208.745 kb on - strand at 1208.745 kb on - strand at 1208.752 kb on + strand, within LRK53_RS05135 at 1208.752 kb on + strand, within LRK53_RS05135 at 1208.753 kb on - strand, within LRK53_RS05135 at 1208.753 kb on - strand, within LRK53_RS05135 at 1208.785 kb on + strand, within LRK53_RS05135 at 1208.785 kb on + strand, within LRK53_RS05135 at 1208.785 kb on + strand, within LRK53_RS05135 at 1208.785 kb on + strand, within LRK53_RS05135 at 1208.785 kb on + strand, within LRK53_RS05135 at 1208.785 kb on + strand, within LRK53_RS05135 at 1208.785 kb on + strand, within LRK53_RS05135 at 1208.786 kb on - strand, within LRK53_RS05135 at 1208.786 kb on - strand, within LRK53_RS05135 at 1208.786 kb on - strand, within LRK53_RS05135 at 1208.797 kb on + strand, within LRK53_RS05135 at 1208.797 kb on + strand, within LRK53_RS05135 at 1208.797 kb on + strand, within LRK53_RS05135 at 1208.798 kb on - strand, within LRK53_RS05135 at 1208.985 kb on + strand, within LRK53_RS05135 at 1208.986 kb on - strand, within LRK53_RS05135 at 1208.986 kb on - strand, within LRK53_RS05135 at 1209.006 kb on + strand, within LRK53_RS05135 at 1209.139 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES no stress control remove 1,208,744 + -0.6 1,208,744 + +0.1 1,208,744 + -0.5 1,208,744 + +2.0 1,208,744 + -1.4 1,208,745 - -1.0 1,208,745 - -1.4 1,208,745 - -0.0 1,208,745 - -1.8 1,208,745 - -0.4 1,208,745 - -0.0 1,208,745 - -0.5 1,208,752 + LRK53_RS05135 0.11 -0.8 1,208,752 + LRK53_RS05135 0.11 -0.0 1,208,753 - LRK53_RS05135 0.11 +0.4 1,208,753 - LRK53_RS05135 0.11 -0.7 1,208,785 + LRK53_RS05135 0.18 +0.5 1,208,785 + LRK53_RS05135 0.18 +0.2 1,208,785 + LRK53_RS05135 0.18 -2.1 1,208,785 + LRK53_RS05135 0.18 -0.0 1,208,785 + LRK53_RS05135 0.18 -0.6 1,208,785 + LRK53_RS05135 0.18 -1.3 1,208,785 + LRK53_RS05135 0.18 -0.6 1,208,786 - LRK53_RS05135 0.19 -0.6 1,208,786 - LRK53_RS05135 0.19 +1.0 1,208,786 - LRK53_RS05135 0.19 -1.0 1,208,797 + LRK53_RS05135 0.21 +0.4 1,208,797 + LRK53_RS05135 0.21 -1.2 1,208,797 + LRK53_RS05135 0.21 -1.0 1,208,798 - LRK53_RS05135 0.21 -0.6 1,208,985 + LRK53_RS05135 0.64 -1.4 1,208,986 - LRK53_RS05135 0.64 -1.6 1,208,986 - LRK53_RS05135 0.64 -1.0 1,209,006 + LRK53_RS05135 0.69 -0.8 1,209,139 + -0.7
Or see this region's nucleotide sequence