Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS05135

Experiment: R2A_PIPES no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS05130 and LRK53_RS05135 overlap by 8 nucleotidesLRK53_RS05135 and LRK53_RS05140 are separated by 18 nucleotidesLRK53_RS05140 and LRK53_RS05145 are separated by 13 nucleotides LRK53_RS05130: LRK53_RS05130 - Holliday junction branch migration DNA helicase RuvB, at 1,207,662 to 1,208,711 _RS05130 LRK53_RS05135: LRK53_RS05135 - tol-pal system-associated acyl-CoA thioesterase, at 1,208,704 to 1,209,141 _RS05135 LRK53_RS05140: LRK53_RS05140 - protein TolQ, at 1,209,160 to 1,209,846 _RS05140 LRK53_RS05145: LRK53_RS05145 - protein TolR, at 1,209,860 to 1,210,324 _RS05145 Position (kb) 1208 1209 1210Strain fitness (log2 ratio) -2 -1 0 1 2at 1208.744 kb on + strandat 1208.744 kb on + strandat 1208.744 kb on + strandat 1208.744 kb on + strandat 1208.744 kb on + strandat 1208.745 kb on - strandat 1208.745 kb on - strandat 1208.745 kb on - strandat 1208.745 kb on - strandat 1208.745 kb on - strandat 1208.745 kb on - strandat 1208.745 kb on - strandat 1208.752 kb on + strand, within LRK53_RS05135at 1208.752 kb on + strand, within LRK53_RS05135at 1208.753 kb on - strand, within LRK53_RS05135at 1208.753 kb on - strand, within LRK53_RS05135at 1208.785 kb on + strand, within LRK53_RS05135at 1208.785 kb on + strand, within LRK53_RS05135at 1208.785 kb on + strand, within LRK53_RS05135at 1208.785 kb on + strand, within LRK53_RS05135at 1208.785 kb on + strand, within LRK53_RS05135at 1208.785 kb on + strand, within LRK53_RS05135at 1208.785 kb on + strand, within LRK53_RS05135at 1208.786 kb on - strand, within LRK53_RS05135at 1208.786 kb on - strand, within LRK53_RS05135at 1208.786 kb on - strand, within LRK53_RS05135at 1208.797 kb on + strand, within LRK53_RS05135at 1208.797 kb on + strand, within LRK53_RS05135at 1208.797 kb on + strand, within LRK53_RS05135at 1208.798 kb on - strand, within LRK53_RS05135at 1208.985 kb on + strand, within LRK53_RS05135at 1208.986 kb on - strand, within LRK53_RS05135at 1208.986 kb on - strand, within LRK53_RS05135at 1209.006 kb on + strand, within LRK53_RS05135at 1209.139 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES no stress control
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1,208,744 + -0.6
1,208,744 + +0.1
1,208,744 + -0.5
1,208,744 + +2.0
1,208,744 + -1.4
1,208,745 - -1.0
1,208,745 - -1.4
1,208,745 - -0.0
1,208,745 - -1.8
1,208,745 - -0.4
1,208,745 - -0.0
1,208,745 - -0.5
1,208,752 + LRK53_RS05135 0.11 -0.8
1,208,752 + LRK53_RS05135 0.11 -0.0
1,208,753 - LRK53_RS05135 0.11 +0.4
1,208,753 - LRK53_RS05135 0.11 -0.7
1,208,785 + LRK53_RS05135 0.18 +0.5
1,208,785 + LRK53_RS05135 0.18 +0.2
1,208,785 + LRK53_RS05135 0.18 -2.1
1,208,785 + LRK53_RS05135 0.18 -0.0
1,208,785 + LRK53_RS05135 0.18 -0.6
1,208,785 + LRK53_RS05135 0.18 -1.3
1,208,785 + LRK53_RS05135 0.18 -0.6
1,208,786 - LRK53_RS05135 0.19 -0.6
1,208,786 - LRK53_RS05135 0.19 +1.0
1,208,786 - LRK53_RS05135 0.19 -1.0
1,208,797 + LRK53_RS05135 0.21 +0.4
1,208,797 + LRK53_RS05135 0.21 -1.2
1,208,797 + LRK53_RS05135 0.21 -1.0
1,208,798 - LRK53_RS05135 0.21 -0.6
1,208,985 + LRK53_RS05135 0.64 -1.4
1,208,986 - LRK53_RS05135 0.64 -1.6
1,208,986 - LRK53_RS05135 0.64 -1.0
1,209,006 + LRK53_RS05135 0.69 -0.8
1,209,139 + -0.7

Or see this region's nucleotide sequence