Experiment: pH4.8
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS01315 and LRK53_RS01320 are separated by 542 nucleotides LRK53_RS01320 and LRK53_RS01325 are separated by 156 nucleotides LRK53_RS01325 and LRK53_RS01330 are separated by 21 nucleotides LRK53_RS01330 and LRK53_RS01335 are separated by 435 nucleotides
LRK53_RS01315: LRK53_RS01315 - heme o synthase, at 322,982 to 323,884
_RS01315
LRK53_RS01320: LRK53_RS01320 - hypothetical protein, at 324,427 to 324,660
_RS01320
LRK53_RS01325: LRK53_RS01325 - magnesium-translocating P-type ATPase, at 324,817 to 327,471
_RS01325
LRK53_RS01330: LRK53_RS01330 - hypothetical protein, at 327,493 to 327,738
_RS01330
LRK53_RS01335: LRK53_RS01335 - bile acid:sodium symporter, at 328,174 to 329,169
_RS01335
Position (kb) 324
325
326
327
328 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 324.187 kb on + strand at 324.187 kb on + strand at 324.187 kb on + strand at 324.187 kb on + strand at 324.187 kb on + strand at 324.187 kb on + strand at 324.187 kb on + strand at 324.187 kb on + strand at 324.187 kb on + strand at 324.187 kb on + strand at 324.187 kb on + strand at 324.187 kb on + strand at 324.187 kb on + strand at 324.187 kb on + strand at 324.188 kb on - strand at 324.195 kb on + strand at 324.195 kb on + strand at 324.195 kb on + strand at 324.195 kb on + strand at 324.195 kb on + strand at 324.195 kb on + strand at 324.196 kb on - strand at 324.196 kb on - strand at 324.196 kb on - strand at 324.196 kb on - strand at 324.196 kb on - strand at 324.196 kb on - strand at 324.243 kb on + strand at 324.244 kb on - strand at 324.254 kb on + strand at 324.254 kb on + strand at 324.254 kb on + strand at 324.254 kb on + strand at 324.254 kb on + strand at 324.254 kb on + strand at 324.254 kb on + strand at 324.254 kb on + strand at 324.254 kb on + strand at 324.254 kb on + strand at 324.254 kb on + strand at 324.254 kb on + strand at 324.254 kb on + strand at 324.254 kb on + strand at 324.254 kb on + strand at 324.254 kb on + strand at 324.254 kb on + strand at 324.254 kb on + strand at 324.255 kb on - strand at 324.255 kb on - strand at 324.255 kb on - strand at 324.255 kb on - strand at 324.255 kb on - strand at 324.255 kb on - strand at 324.255 kb on - strand at 324.264 kb on + strand at 324.264 kb on + strand at 324.264 kb on + strand at 324.265 kb on - strand at 324.265 kb on - strand at 324.265 kb on - strand at 324.269 kb on + strand at 324.269 kb on + strand at 324.269 kb on + strand at 324.269 kb on + strand at 324.269 kb on + strand at 324.269 kb on + strand at 324.314 kb on + strand at 324.314 kb on + strand at 324.314 kb on + strand at 324.314 kb on + strand at 324.314 kb on + strand at 324.315 kb on - strand at 324.315 kb on - strand at 324.315 kb on - strand at 324.315 kb on - strand at 324.315 kb on - strand at 324.315 kb on - strand at 324.315 kb on - strand at 324.369 kb on + strand at 324.508 kb on + strand, within LRK53_RS01320 at 324.508 kb on + strand, within LRK53_RS01320 at 324.508 kb on + strand, within LRK53_RS01320 at 324.508 kb on + strand, within LRK53_RS01320 at 324.508 kb on + strand, within LRK53_RS01320 at 324.508 kb on + strand, within LRK53_RS01320 at 324.509 kb on - strand, within LRK53_RS01320 at 324.509 kb on - strand, within LRK53_RS01320 at 324.509 kb on - strand, within LRK53_RS01320 at 324.509 kb on - strand, within LRK53_RS01320 at 324.509 kb on - strand, within LRK53_RS01320 at 324.509 kb on - strand, within LRK53_RS01320 at 324.509 kb on - strand, within LRK53_RS01320 at 324.509 kb on - strand, within LRK53_RS01320 at 324.509 kb on - strand, within LRK53_RS01320 at 324.647 kb on + strand at 325.170 kb on - strand, within LRK53_RS01325 at 325.170 kb on - strand, within LRK53_RS01325 at 325.170 kb on - strand, within LRK53_RS01325 at 325.170 kb on - strand, within LRK53_RS01325 at 325.299 kb on - strand, within LRK53_RS01325 at 325.504 kb on + strand, within LRK53_RS01325 at 325.504 kb on + strand, within LRK53_RS01325 at 325.504 kb on + strand, within LRK53_RS01325 at 325.504 kb on + strand, within LRK53_RS01325 at 325.504 kb on + strand, within LRK53_RS01325 at 325.505 kb on - strand, within LRK53_RS01325 at 325.505 kb on - strand, within LRK53_RS01325 at 325.570 kb on + strand, within LRK53_RS01325 at 325.570 kb on + strand, within LRK53_RS01325 at 325.984 kb on + strand, within LRK53_RS01325 at 325.985 kb on - strand, within LRK53_RS01325 at 325.991 kb on - strand, within LRK53_RS01325 at 325.991 kb on - strand, within LRK53_RS01325 at 325.991 kb on - strand, within LRK53_RS01325 at 326.863 kb on + strand, within LRK53_RS01325 at 326.863 kb on + strand, within LRK53_RS01325 at 326.863 kb on + strand, within LRK53_RS01325 at 326.863 kb on + strand, within LRK53_RS01325 at 326.863 kb on + strand, within LRK53_RS01325 at 326.864 kb on - strand, within LRK53_RS01325 at 326.864 kb on - strand, within LRK53_RS01325 at 326.864 kb on - strand, within LRK53_RS01325 at 326.864 kb on - strand, within LRK53_RS01325 at 326.980 kb on + strand, within LRK53_RS01325 at 327.028 kb on + strand, within LRK53_RS01325 at 327.029 kb on - strand, within LRK53_RS01325 at 327.029 kb on - strand, within LRK53_RS01325 at 327.076 kb on - strand, within LRK53_RS01325 at 327.076 kb on - strand, within LRK53_RS01325 at 327.076 kb on - strand, within LRK53_RS01325 at 327.409 kb on + strand at 327.442 kb on + strand at 327.442 kb on + strand at 327.442 kb on + strand at 327.442 kb on + strand at 327.442 kb on + strand at 327.443 kb on - strand at 327.443 kb on - strand at 327.443 kb on - strand at 327.443 kb on - strand at 327.687 kb on + strand, within LRK53_RS01330 at 327.687 kb on + strand, within LRK53_RS01330 at 327.687 kb on + strand, within LRK53_RS01330 at 327.687 kb on + strand, within LRK53_RS01330 at 327.687 kb on + strand, within LRK53_RS01330 at 327.687 kb on + strand, within LRK53_RS01330 at 327.687 kb on + strand, within LRK53_RS01330 at 327.687 kb on + strand, within LRK53_RS01330 at 327.687 kb on + strand, within LRK53_RS01330 at 327.688 kb on - strand, within LRK53_RS01330 at 327.688 kb on - strand, within LRK53_RS01330 at 327.688 kb on - strand, within LRK53_RS01330 at 327.688 kb on - strand, within LRK53_RS01330 at 327.847 kb on - strand at 327.965 kb on - strand at 327.965 kb on - strand at 328.003 kb on + strand at 328.003 kb on + strand at 328.004 kb on - strand at 328.004 kb on - strand at 328.130 kb on + strand at 328.130 kb on + strand at 328.131 kb on - strand at 328.220 kb on + strand at 328.221 kb on - strand at 328.431 kb on + strand, within LRK53_RS01335 at 328.431 kb on + strand, within LRK53_RS01335 at 328.431 kb on + strand, within LRK53_RS01335 at 328.431 kb on + strand, within LRK53_RS01335 at 328.431 kb on + strand, within LRK53_RS01335 at 328.431 kb on + strand, within LRK53_RS01335 at 328.432 kb on - strand, within LRK53_RS01335 at 328.432 kb on - strand, within LRK53_RS01335 at 328.432 kb on - strand, within LRK53_RS01335 at 328.432 kb on - strand, within LRK53_RS01335 at 328.432 kb on - strand, within LRK53_RS01335 at 328.432 kb on - strand, within LRK53_RS01335 at 328.432 kb on - strand, within LRK53_RS01335
Per-strain Table
Position Strand Gene LocusTag Fraction pH4.8 remove 324,187 + -0.5 324,187 + -1.5 324,187 + -0.5 324,187 + +1.1 324,187 + -0.5 324,187 + +0.8 324,187 + +0.1 324,187 + +0.1 324,187 + -0.5 324,187 + +0.5 324,187 + +0.6 324,187 + +0.2 324,187 + -1.9 324,187 + -1.8 324,188 - -3.4 324,195 + -1.3 324,195 + -1.1 324,195 + +2.1 324,195 + +0.1 324,195 + +1.1 324,195 + -0.6 324,196 - -2.9 324,196 - -0.5 324,196 - -0.5 324,196 - -1.3 324,196 - -2.4 324,196 - +0.1 324,243 + -2.1 324,244 - +0.5 324,254 + -0.8 324,254 + -1.6 324,254 + -1.9 324,254 + -0.1 324,254 + -1.9 324,254 + +1.1 324,254 + -0.9 324,254 + +0.6 324,254 + -0.9 324,254 + -2.1 324,254 + +0.3 324,254 + -1.2 324,254 + -0.1 324,254 + -0.5 324,254 + -1.0 324,254 + +1.6 324,254 + -1.3 324,254 + -0.8 324,255 - -1.3 324,255 - +0.1 324,255 - +1.1 324,255 - -0.5 324,255 - -2.5 324,255 - -3.2 324,255 - -0.9 324,264 + +1.1 324,264 + -0.5 324,264 + -1.5 324,265 - -0.5 324,265 - -0.9 324,265 - -0.0 324,269 + -1.8 324,269 + +1.1 324,269 + -1.4 324,269 + +0.1 324,269 + -1.4 324,269 + +2.6 324,314 + -0.9 324,314 + +0.1 324,314 + -0.8 324,314 + +0.6 324,314 + +0.1 324,315 - -0.9 324,315 - -1.3 324,315 - -1.8 324,315 - -3.6 324,315 - -0.9 324,315 - -2.6 324,315 - -0.5 324,369 + -1.3 324,508 + LRK53_RS01320 0.35 -1.3 324,508 + LRK53_RS01320 0.35 -1.3 324,508 + LRK53_RS01320 0.35 +1.1 324,508 + LRK53_RS01320 0.35 -1.9 324,508 + LRK53_RS01320 0.35 -2.6 324,508 + LRK53_RS01320 0.35 -1.8 324,509 - LRK53_RS01320 0.35 +2.1 324,509 - LRK53_RS01320 0.35 -1.8 324,509 - LRK53_RS01320 0.35 -0.9 324,509 - LRK53_RS01320 0.35 +0.1 324,509 - LRK53_RS01320 0.35 -1.2 324,509 - LRK53_RS01320 0.35 +1.1 324,509 - LRK53_RS01320 0.35 +1.1 324,509 - LRK53_RS01320 0.35 -0.9 324,509 - LRK53_RS01320 0.35 +1.1 324,647 + -0.3 325,170 - LRK53_RS01325 0.13 +0.1 325,170 - LRK53_RS01325 0.13 -1.1 325,170 - LRK53_RS01325 0.13 +0.1 325,170 - LRK53_RS01325 0.13 -0.5 325,299 - LRK53_RS01325 0.18 -0.5 325,504 + LRK53_RS01325 0.26 +1.1 325,504 + LRK53_RS01325 0.26 -1.3 325,504 + LRK53_RS01325 0.26 +1.1 325,504 + LRK53_RS01325 0.26 -0.9 325,504 + LRK53_RS01325 0.26 -1.5 325,505 - LRK53_RS01325 0.26 +1.1 325,505 - LRK53_RS01325 0.26 +0.1 325,570 + LRK53_RS01325 0.28 -0.9 325,570 + LRK53_RS01325 0.28 -2.5 325,984 + LRK53_RS01325 0.44 +1.1 325,985 - LRK53_RS01325 0.44 +0.1 325,991 - LRK53_RS01325 0.44 +0.1 325,991 - LRK53_RS01325 0.44 -2.9 325,991 - LRK53_RS01325 0.44 -0.5 326,863 + LRK53_RS01325 0.77 +1.1 326,863 + LRK53_RS01325 0.77 +0.1 326,863 + LRK53_RS01325 0.77 -1.9 326,863 + LRK53_RS01325 0.77 +0.1 326,863 + LRK53_RS01325 0.77 +1.1 326,864 - LRK53_RS01325 0.77 +1.1 326,864 - LRK53_RS01325 0.77 +0.1 326,864 - LRK53_RS01325 0.77 +1.1 326,864 - LRK53_RS01325 0.77 +0.1 326,980 + LRK53_RS01325 0.81 +1.1 327,028 + LRK53_RS01325 0.83 +1.1 327,029 - LRK53_RS01325 0.83 +2.1 327,029 - LRK53_RS01325 0.83 -1.3 327,076 - LRK53_RS01325 0.85 -2.1 327,076 - LRK53_RS01325 0.85 -1.8 327,076 - LRK53_RS01325 0.85 +1.1 327,409 + +0.1 327,442 + +1.1 327,442 + -0.5 327,442 + +1.1 327,442 + +0.1 327,442 + -0.5 327,443 - -1.9 327,443 - +1.1 327,443 - +0.1 327,443 - -1.3 327,687 + LRK53_RS01330 0.79 -1.0 327,687 + LRK53_RS01330 0.79 +0.3 327,687 + LRK53_RS01330 0.79 -0.2 327,687 + LRK53_RS01330 0.79 -1.1 327,687 + LRK53_RS01330 0.79 -0.5 327,687 + LRK53_RS01330 0.79 -0.3 327,687 + LRK53_RS01330 0.79 +0.1 327,687 + LRK53_RS01330 0.79 -0.5 327,687 + LRK53_RS01330 0.79 -0.8 327,688 - LRK53_RS01330 0.79 +0.3 327,688 - LRK53_RS01330 0.79 -1.5 327,688 - LRK53_RS01330 0.79 -1.2 327,688 - LRK53_RS01330 0.79 +1.1 327,847 - -0.3 327,965 - -0.3 327,965 - -1.8 328,003 + -2.5 328,003 + -0.1 328,004 - -0.9 328,004 - -1.3 328,130 + -0.7 328,130 + +0.7 328,131 - +1.1 328,220 + -1.6 328,221 - +0.1 328,431 + LRK53_RS01335 0.26 -1.8 328,431 + LRK53_RS01335 0.26 +0.6 328,431 + LRK53_RS01335 0.26 -0.5 328,431 + LRK53_RS01335 0.26 -0.5 328,431 + LRK53_RS01335 0.26 -0.5 328,431 + LRK53_RS01335 0.26 -1.5 328,432 - LRK53_RS01335 0.26 +0.7 328,432 - LRK53_RS01335 0.26 -0.2 328,432 - LRK53_RS01335 0.26 -0.9 328,432 - LRK53_RS01335 0.26 -0.7 328,432 - LRK53_RS01335 0.26 +1.7 328,432 - LRK53_RS01335 0.26 +1.1 328,432 - LRK53_RS01335 0.26 -0.5
Or see this region's nucleotide sequence