Strain Fitness in Fusobacterium nucleatum SB010 around HUW76_03105

Experiment: G1M1_D7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHUW76_03100 and HUW76_03105 are separated by 24 nucleotidesHUW76_03105 and HUW76_03110 overlap by 4 nucleotidesHUW76_03110 and HUW76_03115 are separated by 40 nucleotidesHUW76_03115 and HUW76_03120 are separated by 51 nucleotides HUW76_03100: HUW76_03100 - F0F1 ATP synthase subunit alpha, at 630,196 to 631,698 _03100 HUW76_03105: HUW76_03105 - ATP synthase F1 subunit delta, at 631,723 to 632,247 _03105 HUW76_03110: HUW76_03110 - F0F1 ATP synthase subunit B, at 632,244 to 632,735 _03110 HUW76_03115: HUW76_03115 - ATP synthase F0 subunit C, at 632,776 to 633,045 _03115 HUW76_03120: HUW76_03120 - F0F1 ATP synthase subunit A, at 633,097 to 633,864 _03120 Position (kb) 631 632 633Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 630.729 kb on + strand, within HUW76_03100at 630.758 kb on + strand, within HUW76_03100at 630.758 kb on + strand, within HUW76_03100at 630.758 kb on + strand, within HUW76_03100at 630.770 kb on + strand, within HUW76_03100at 630.770 kb on + strand, within HUW76_03100at 630.826 kb on + strand, within HUW76_03100at 630.872 kb on + strand, within HUW76_03100at 630.912 kb on + strand, within HUW76_03100at 630.931 kb on + strand, within HUW76_03100at 630.941 kb on + strand, within HUW76_03100at 630.941 kb on + strand, within HUW76_03100at 630.942 kb on - strand, within HUW76_03100at 630.984 kb on + strand, within HUW76_03100at 630.986 kb on + strand, within HUW76_03100at 630.986 kb on + strand, within HUW76_03100at 630.992 kb on - strand, within HUW76_03100at 631.029 kb on + strand, within HUW76_03100at 631.029 kb on + strand, within HUW76_03100at 631.029 kb on + strand, within HUW76_03100at 631.029 kb on + strand, within HUW76_03100at 631.029 kb on + strand, within HUW76_03100at 631.029 kb on + strand, within HUW76_03100at 631.031 kb on + strand, within HUW76_03100at 631.031 kb on + strand, within HUW76_03100at 631.031 kb on + strand, within HUW76_03100at 631.031 kb on + strand, within HUW76_03100at 631.037 kb on - strand, within HUW76_03100at 631.037 kb on - strand, within HUW76_03100at 631.037 kb on - strand, within HUW76_03100at 631.037 kb on - strand, within HUW76_03100at 631.051 kb on + strand, within HUW76_03100at 631.051 kb on + strand, within HUW76_03100at 631.059 kb on - strand, within HUW76_03100at 631.059 kb on - strand, within HUW76_03100at 631.059 kb on - strand, within HUW76_03100at 631.059 kb on - strand, within HUW76_03100at 631.076 kb on + strand, within HUW76_03100at 631.094 kb on - strand, within HUW76_03100at 631.094 kb on - strand, within HUW76_03100at 631.094 kb on - strand, within HUW76_03100at 631.137 kb on - strand, within HUW76_03100at 631.137 kb on - strand, within HUW76_03100at 631.137 kb on - strand, within HUW76_03100at 631.206 kb on - strand, within HUW76_03100at 631.206 kb on - strand, within HUW76_03100at 631.215 kb on - strand, within HUW76_03100at 631.230 kb on - strand, within HUW76_03100at 631.256 kb on - strand, within HUW76_03100at 631.279 kb on - strand, within HUW76_03100at 631.284 kb on - strand, within HUW76_03100at 631.295 kb on - strand, within HUW76_03100at 631.324 kb on - strand, within HUW76_03100at 631.336 kb on + strand, within HUW76_03100at 631.343 kb on - strand, within HUW76_03100at 631.358 kb on + strand, within HUW76_03100at 631.366 kb on - strand, within HUW76_03100at 631.382 kb on + strand, within HUW76_03100at 631.382 kb on + strand, within HUW76_03100at 631.382 kb on + strand, within HUW76_03100at 631.473 kb on + strand, within HUW76_03100at 631.481 kb on - strand, within HUW76_03100at 631.500 kb on - strand, within HUW76_03100at 631.504 kb on + strand, within HUW76_03100at 631.504 kb on + strand, within HUW76_03100at 631.509 kb on + strand, within HUW76_03100at 631.512 kb on - strand, within HUW76_03100at 631.512 kb on - strand, within HUW76_03100at 631.512 kb on - strand, within HUW76_03100at 631.512 kb on - strand, within HUW76_03100at 631.518 kb on + strand, within HUW76_03100at 631.519 kb on - strand, within HUW76_03100at 631.526 kb on - strand, within HUW76_03100at 631.526 kb on - strand, within HUW76_03100at 631.526 kb on - strand, within HUW76_03100at 631.526 kb on - strand, within HUW76_03100at 631.559 kb on + strandat 631.591 kb on + strandat 631.599 kb on + strandat 631.599 kb on + strandat 631.619 kb on + strandat 631.741 kb on + strandat 631.741 kb on + strandat 631.749 kb on - strandat 631.749 kb on - strandat 631.763 kb on - strandat 632.002 kb on + strand, within HUW76_03105at 632.028 kb on + strand, within HUW76_03105at 632.028 kb on + strand, within HUW76_03105at 632.036 kb on + strand, within HUW76_03105at 632.129 kb on + strand, within HUW76_03105at 632.134 kb on + strand, within HUW76_03105at 632.137 kb on - strand, within HUW76_03105at 632.152 kb on + strand, within HUW76_03105at 632.160 kb on - strand, within HUW76_03105at 632.211 kb on - strandat 632.336 kb on + strand, within HUW76_03110at 632.535 kb on - strand, within HUW76_03110at 632.535 kb on - strand, within HUW76_03110at 632.550 kb on + strand, within HUW76_03110at 632.550 kb on + strand, within HUW76_03110at 632.595 kb on - strand, within HUW76_03110at 632.595 kb on - strand, within HUW76_03110at 632.781 kb on - strandat 632.807 kb on - strand, within HUW76_03115at 632.868 kb on - strand, within HUW76_03115at 632.875 kb on - strand, within HUW76_03115at 632.919 kb on - strand, within HUW76_03115at 632.919 kb on - strand, within HUW76_03115at 632.949 kb on - strand, within HUW76_03115at 632.952 kb on + strand, within HUW76_03115at 632.952 kb on + strand, within HUW76_03115at 632.954 kb on + strand, within HUW76_03115at 632.954 kb on + strand, within HUW76_03115at 632.954 kb on + strand, within HUW76_03115at 632.954 kb on + strand, within HUW76_03115at 632.961 kb on - strand, within HUW76_03115at 632.961 kb on - strand, within HUW76_03115at 632.961 kb on - strand, within HUW76_03115at 632.961 kb on - strand, within HUW76_03115at 632.961 kb on - strand, within HUW76_03115at 632.961 kb on - strand, within HUW76_03115at 632.962 kb on - strand, within HUW76_03115at 632.963 kb on + strand, within HUW76_03115at 632.963 kb on + strand, within HUW76_03115at 632.964 kb on + strand, within HUW76_03115at 632.964 kb on + strand, within HUW76_03115at 632.986 kb on - strand, within HUW76_03115at 632.988 kb on + strand, within HUW76_03115at 632.988 kb on + strand, within HUW76_03115at 632.988 kb on + strand, within HUW76_03115at 632.988 kb on + strand, within HUW76_03115at 632.988 kb on + strand, within HUW76_03115at 632.988 kb on + strand, within HUW76_03115at 632.988 kb on + strand, within HUW76_03115at 632.988 kb on + strand, within HUW76_03115at 632.988 kb on + strand, within HUW76_03115at 632.996 kb on - strand, within HUW76_03115at 632.996 kb on - strand, within HUW76_03115at 632.996 kb on - strand, within HUW76_03115at 632.996 kb on - strand, within HUW76_03115at 632.996 kb on - strand, within HUW76_03115at 632.996 kb on - strand, within HUW76_03115at 632.996 kb on - strand, within HUW76_03115at 632.996 kb on - strand, within HUW76_03115at 633.010 kb on + strand, within HUW76_03115at 633.010 kb on + strand, within HUW76_03115at 633.010 kb on + strand, within HUW76_03115at 633.010 kb on + strand, within HUW76_03115at 633.010 kb on + strand, within HUW76_03115at 633.018 kb on - strand, within HUW76_03115at 633.018 kb on - strand, within HUW76_03115at 633.018 kb on - strand, within HUW76_03115at 633.040 kb on - strandat 633.040 kb on - strandat 633.148 kb on - strandat 633.148 kb on - strandat 633.153 kb on - strandat 633.153 kb on - strandat 633.153 kb on - strandat 633.153 kb on - strandat 633.184 kb on + strand, within HUW76_03120at 633.244 kb on + strand, within HUW76_03120at 633.244 kb on + strand, within HUW76_03120at 633.244 kb on + strand, within HUW76_03120at 633.244 kb on + strand, within HUW76_03120

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Per-strain Table

Position Strand Gene LocusTag Fraction G1M1_D7
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630,729 + HUW76_03100 0.35 -3.0
630,758 + HUW76_03100 0.37 -2.2
630,758 + HUW76_03100 0.37 -3.4
630,758 + HUW76_03100 0.37 -2.2
630,770 + HUW76_03100 0.38 -3.5
630,770 + HUW76_03100 0.38 -4.8
630,826 + HUW76_03100 0.42 -3.4
630,872 + HUW76_03100 0.45 -5.0
630,912 + HUW76_03100 0.48 -4.4
630,931 + HUW76_03100 0.49 -4.6
630,941 + HUW76_03100 0.50 -3.0
630,941 + HUW76_03100 0.50 -5.6
630,942 - HUW76_03100 0.50 -4.6
630,984 + HUW76_03100 0.52 -5.3
630,986 + HUW76_03100 0.53 -1.7
630,986 + HUW76_03100 0.53 -4.4
630,992 - HUW76_03100 0.53 -5.4
631,029 + HUW76_03100 0.55 -2.5
631,029 + HUW76_03100 0.55 -3.8
631,029 + HUW76_03100 0.55 -1.9
631,029 + HUW76_03100 0.55 -0.2
631,029 + HUW76_03100 0.55 -2.4
631,029 + HUW76_03100 0.55 -3.8
631,031 + HUW76_03100 0.56 -2.2
631,031 + HUW76_03100 0.56 -4.1
631,031 + HUW76_03100 0.56 -0.7
631,031 + HUW76_03100 0.56 -3.1
631,037 - HUW76_03100 0.56 -1.3
631,037 - HUW76_03100 0.56 -4.9
631,037 - HUW76_03100 0.56 -4.5
631,037 - HUW76_03100 0.56 -1.7
631,051 + HUW76_03100 0.57 -2.4
631,051 + HUW76_03100 0.57 -2.6
631,059 - HUW76_03100 0.57 -4.5
631,059 - HUW76_03100 0.57 -4.0
631,059 - HUW76_03100 0.57 -4.2
631,059 - HUW76_03100 0.57 -5.0
631,076 + HUW76_03100 0.59 -3.0
631,094 - HUW76_03100 0.60 -5.5
631,094 - HUW76_03100 0.60 -3.3
631,094 - HUW76_03100 0.60 -3.4
631,137 - HUW76_03100 0.63 -5.0
631,137 - HUW76_03100 0.63 -3.6
631,137 - HUW76_03100 0.63 -1.5
631,206 - HUW76_03100 0.67 -1.7
631,206 - HUW76_03100 0.67 -3.2
631,215 - HUW76_03100 0.68 -4.4
631,230 - HUW76_03100 0.69 -5.7
631,256 - HUW76_03100 0.71 -4.0
631,279 - HUW76_03100 0.72 -2.5
631,284 - HUW76_03100 0.72 -5.0
631,295 - HUW76_03100 0.73 -3.9
631,324 - HUW76_03100 0.75 -2.2
631,336 + HUW76_03100 0.76 -2.3
631,343 - HUW76_03100 0.76 -5.6
631,358 + HUW76_03100 0.77 -2.6
631,366 - HUW76_03100 0.78 -4.6
631,382 + HUW76_03100 0.79 -2.6
631,382 + HUW76_03100 0.79 -2.3
631,382 + HUW76_03100 0.79 +0.2
631,473 + HUW76_03100 0.85 -1.2
631,481 - HUW76_03100 0.85 -3.4
631,500 - HUW76_03100 0.87 -4.5
631,504 + HUW76_03100 0.87 +0.3
631,504 + HUW76_03100 0.87 -2.6
631,509 + HUW76_03100 0.87 -0.5
631,512 - HUW76_03100 0.88 -5.1
631,512 - HUW76_03100 0.88 -1.8
631,512 - HUW76_03100 0.88 -4.3
631,512 - HUW76_03100 0.88 -3.2
631,518 + HUW76_03100 0.88 -2.2
631,519 - HUW76_03100 0.88 -4.6
631,526 - HUW76_03100 0.88 -2.6
631,526 - HUW76_03100 0.88 -5.6
631,526 - HUW76_03100 0.88 +0.2
631,526 - HUW76_03100 0.88 -5.1
631,559 + -1.5
631,591 + -2.3
631,599 + -3.1
631,599 + -1.7
631,619 + -0.2
631,741 + -2.3
631,741 + -1.3
631,749 - -4.9
631,749 - -3.7
631,763 - -1.9
632,002 + HUW76_03105 0.53 -4.3
632,028 + HUW76_03105 0.58 -3.5
632,028 + HUW76_03105 0.58 -2.8
632,036 + HUW76_03105 0.60 -3.5
632,129 + HUW76_03105 0.77 -4.1
632,134 + HUW76_03105 0.78 -1.2
632,137 - HUW76_03105 0.79 -5.1
632,152 + HUW76_03105 0.82 -1.5
632,160 - HUW76_03105 0.83 -3.3
632,211 - -4.2
632,336 + HUW76_03110 0.19 -0.3
632,535 - HUW76_03110 0.59 -4.3
632,535 - HUW76_03110 0.59 -5.1
632,550 + HUW76_03110 0.62 -3.3
632,550 + HUW76_03110 0.62 -0.5
632,595 - HUW76_03110 0.71 -2.9
632,595 - HUW76_03110 0.71 -2.9
632,781 - -0.4
632,807 - HUW76_03115 0.11 -5.4
632,868 - HUW76_03115 0.34 -4.5
632,875 - HUW76_03115 0.37 -3.5
632,919 - HUW76_03115 0.53 -3.2
632,919 - HUW76_03115 0.53 -3.7
632,949 - HUW76_03115 0.64 -2.9
632,952 + HUW76_03115 0.65 -0.8
632,952 + HUW76_03115 0.65 -2.7
632,954 + HUW76_03115 0.66 -3.8
632,954 + HUW76_03115 0.66 -1.3
632,954 + HUW76_03115 0.66 +1.2
632,954 + HUW76_03115 0.66 -3.1
632,961 - HUW76_03115 0.69 -3.7
632,961 - HUW76_03115 0.69 -2.0
632,961 - HUW76_03115 0.69 -3.3
632,961 - HUW76_03115 0.69 -0.7
632,961 - HUW76_03115 0.69 -4.8
632,961 - HUW76_03115 0.69 -3.2
632,962 - HUW76_03115 0.69 -4.0
632,963 + HUW76_03115 0.69 -2.0
632,963 + HUW76_03115 0.69 -2.2
632,964 + HUW76_03115 0.70 -1.9
632,964 + HUW76_03115 0.70 -2.8
632,986 - HUW76_03115 0.78 -0.9
632,988 + HUW76_03115 0.79 -2.6
632,988 + HUW76_03115 0.79 -3.3
632,988 + HUW76_03115 0.79 -4.0
632,988 + HUW76_03115 0.79 -5.1
632,988 + HUW76_03115 0.79 -4.0
632,988 + HUW76_03115 0.79 -1.3
632,988 + HUW76_03115 0.79 +0.1
632,988 + HUW76_03115 0.79 -3.3
632,988 + HUW76_03115 0.79 -2.0
632,996 - HUW76_03115 0.81 -4.1
632,996 - HUW76_03115 0.81 -3.7
632,996 - HUW76_03115 0.81 -5.0
632,996 - HUW76_03115 0.81 -3.3
632,996 - HUW76_03115 0.81 -5.7
632,996 - HUW76_03115 0.81 -3.8
632,996 - HUW76_03115 0.81 -1.0
632,996 - HUW76_03115 0.81 -4.6
633,010 + HUW76_03115 0.87 -3.2
633,010 + HUW76_03115 0.87 -2.6
633,010 + HUW76_03115 0.87 -4.1
633,010 + HUW76_03115 0.87 -0.9
633,010 + HUW76_03115 0.87 -3.6
633,018 - HUW76_03115 0.90 -4.6
633,018 - HUW76_03115 0.90 -3.8
633,018 - HUW76_03115 0.90 -3.8
633,040 - -1.9
633,040 - -2.0
633,148 - -2.8
633,148 - -4.2
633,153 - -2.8
633,153 - -3.9
633,153 - -4.1
633,153 - -2.3
633,184 + HUW76_03120 0.11 -3.5
633,244 + HUW76_03120 0.19 -1.8
633,244 + HUW76_03120 0.19 -3.3
633,244 + HUW76_03120 0.19 -2.8
633,244 + HUW76_03120 0.19 -3.7

Or see this region's nucleotide sequence