Strain Fitness in Erwinia tracheiphila HP pepo 2.2 around IJEDHG_01040

Experiment: plant=Melon; plant sample=MP3; plant location=NA

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIJEDHG_01030 and IJEDHG_01035 overlap by 4 nucleotidesIJEDHG_01035 and tesA are separated by 18 nucleotidestesA and IJEDHG_01045 are separated by 31 nucleotidesIJEDHG_01045 and trxA are separated by 53 nucleotides IJEDHG_01030: IJEDHG_01030 - ABC transporter permease, at 103,953 to 106,370 _01030 IJEDHG_01035: IJEDHG_01035 - ABC transporter ATP-binding protein, at 106,367 to 107,053 _01035 IJEDHG_01040: tesA - multifunctional acyl-CoA thioesterase I/protease I/lysophospholipase L1, at 107,072 to 107,647 tesA IJEDHG_01045: IJEDHG_01045 - SDR family oxidoreductase, at 107,679 to 108,476 _01045 IJEDHG_01050: trxA - co-chaperone YbbN, at 108,530 to 109,387 trxA Position (kb) 107 108Strain fitness (log2 ratio) -1 0 1 2at 106.118 kb on + strand, within IJEDHG_01030at 106.201 kb on - strandat 106.201 kb on - strandat 106.221 kb on - strandat 106.285 kb on - strandat 106.502 kb on - strand, within IJEDHG_01035at 106.502 kb on - strand, within IJEDHG_01035at 106.727 kb on + strand, within IJEDHG_01035at 107.014 kb on + strandat 107.015 kb on - strandat 107.017 kb on + strandat 107.077 kb on - strandat 107.188 kb on + strand, within tesAat 107.189 kb on - strand, within tesAat 107.378 kb on - strand, within tesAat 107.452 kb on + strand, within tesAat 107.452 kb on + strand, within tesAat 107.453 kb on - strand, within tesAat 107.453 kb on - strand, within tesAat 107.635 kb on - strandat 107.841 kb on - strand, within IJEDHG_01045at 107.849 kb on + strand, within IJEDHG_01045at 107.879 kb on + strand, within IJEDHG_01045at 107.880 kb on - strand, within IJEDHG_01045at 107.882 kb on + strand, within IJEDHG_01045at 107.888 kb on - strand, within IJEDHG_01045at 107.891 kb on + strand, within IJEDHG_01045at 107.891 kb on + strand, within IJEDHG_01045at 107.891 kb on + strand, within IJEDHG_01045at 107.892 kb on - strand, within IJEDHG_01045at 107.916 kb on - strand, within IJEDHG_01045at 107.972 kb on - strand, within IJEDHG_01045at 108.063 kb on - strand, within IJEDHG_01045at 108.114 kb on + strand, within IJEDHG_01045at 108.115 kb on - strand, within IJEDHG_01045at 108.130 kb on - strand, within IJEDHG_01045at 108.233 kb on + strand, within IJEDHG_01045at 108.233 kb on + strand, within IJEDHG_01045at 108.234 kb on - strand, within IJEDHG_01045at 108.266 kb on - strand, within IJEDHG_01045at 108.320 kb on + strand, within IJEDHG_01045at 108.325 kb on + strand, within IJEDHG_01045at 108.325 kb on + strand, within IJEDHG_01045at 108.326 kb on - strand, within IJEDHG_01045at 108.326 kb on - strand, within IJEDHG_01045at 108.502 kb on + strandat 108.502 kb on + strandat 108.503 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction plant=Melon; plant sample=MP3; plant location=NA
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106,118 + IJEDHG_01030 0.90 -0.3
106,201 - -1.0
106,201 - +1.0
106,221 - -0.2
106,285 - -0.2
106,502 - IJEDHG_01035 0.20 -0.0
106,502 - IJEDHG_01035 0.20 +1.2
106,727 + IJEDHG_01035 0.52 -1.0
107,014 + -0.9
107,015 - -1.1
107,017 + -0.5
107,077 - +0.1
107,188 + tesA IJEDHG_01040 0.20 -0.4
107,189 - tesA IJEDHG_01040 0.20 +0.6
107,378 - tesA IJEDHG_01040 0.53 +1.6
107,452 + tesA IJEDHG_01040 0.66 -0.9
107,452 + tesA IJEDHG_01040 0.66 +0.6
107,453 - tesA IJEDHG_01040 0.66 +0.1
107,453 - tesA IJEDHG_01040 0.66 -1.2
107,635 - +0.6
107,841 - IJEDHG_01045 0.20 +2.4
107,849 + IJEDHG_01045 0.21 -0.6
107,879 + IJEDHG_01045 0.25 +1.9
107,880 - IJEDHG_01045 0.25 +0.9
107,882 + IJEDHG_01045 0.25 -0.7
107,888 - IJEDHG_01045 0.26 +0.5
107,891 + IJEDHG_01045 0.27 +0.4
107,891 + IJEDHG_01045 0.27 -0.4
107,891 + IJEDHG_01045 0.27 +0.8
107,892 - IJEDHG_01045 0.27 +0.1
107,916 - IJEDHG_01045 0.30 -0.3
107,972 - IJEDHG_01045 0.37 +1.4
108,063 - IJEDHG_01045 0.48 -0.4
108,114 + IJEDHG_01045 0.55 +1.3
108,115 - IJEDHG_01045 0.55 +1.4
108,130 - IJEDHG_01045 0.57 +0.6
108,233 + IJEDHG_01045 0.69 +0.5
108,233 + IJEDHG_01045 0.69 -0.0
108,234 - IJEDHG_01045 0.70 +1.9
108,266 - IJEDHG_01045 0.74 +0.4
108,320 + IJEDHG_01045 0.80 -0.7
108,325 + IJEDHG_01045 0.81 +1.0
108,325 + IJEDHG_01045 0.81 +1.0
108,326 - IJEDHG_01045 0.81 -0.8
108,326 - IJEDHG_01045 0.81 -0.5
108,502 + +0.0
108,502 + -1.3
108,503 - +0.4

Or see this region's nucleotide sequence