Experiment: R2A with 1-octen-3-ol 1.08545883333333 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS30685 and ABIE40_RS30690 are separated by 390 nucleotides ABIE40_RS30690 and ABIE40_RS30695 are separated by 568 nucleotides
ABIE40_RS30685: ABIE40_RS30685 - hypothetical protein, at 828,498 to 828,686
_RS30685
ABIE40_RS30690: ABIE40_RS30690 - hypothetical protein, at 829,077 to 829,484
_RS30690
ABIE40_RS30695: ABIE40_RS30695 - hypothetical protein, at 830,053 to 830,616
_RS30695
Position (kb) 829
830 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 828.154 kb on + strand at 828.274 kb on + strand at 828.274 kb on + strand at 828.275 kb on - strand at 828.316 kb on - strand at 828.318 kb on + strand at 828.319 kb on - strand at 828.324 kb on + strand at 828.324 kb on + strand at 828.346 kb on - strand at 828.382 kb on + strand at 828.382 kb on + strand at 828.382 kb on + strand at 828.383 kb on - strand at 828.383 kb on - strand at 828.383 kb on - strand at 828.383 kb on - strand at 828.407 kb on - strand at 828.427 kb on + strand at 828.436 kb on + strand at 828.574 kb on + strand, within ABIE40_RS30685 at 828.684 kb on + strand at 828.694 kb on + strand at 828.695 kb on - strand at 828.749 kb on - strand at 828.749 kb on - strand at 828.852 kb on + strand at 828.912 kb on + strand at 828.912 kb on + strand at 828.912 kb on + strand at 828.913 kb on - strand at 828.946 kb on + strand at 829.079 kb on - strand at 829.247 kb on + strand, within ABIE40_RS30690 at 829.248 kb on - strand, within ABIE40_RS30690 at 829.331 kb on + strand, within ABIE40_RS30690 at 829.381 kb on - strand, within ABIE40_RS30690 at 829.447 kb on - strand at 829.447 kb on - strand at 829.491 kb on - strand at 829.499 kb on + strand at 829.548 kb on + strand at 829.548 kb on + strand at 829.561 kb on + strand at 829.562 kb on - strand at 829.609 kb on - strand at 829.669 kb on + strand at 829.669 kb on + strand at 829.670 kb on - strand at 829.671 kb on + strand at 829.672 kb on - strand at 829.672 kb on - strand at 829.773 kb on + strand at 829.773 kb on + strand at 829.773 kb on + strand at 829.774 kb on - strand at 829.774 kb on - strand at 829.774 kb on - strand at 829.774 kb on - strand at 829.816 kb on + strand at 829.841 kb on + strand at 829.841 kb on + strand at 829.880 kb on + strand at 829.880 kb on + strand at 829.880 kb on + strand at 829.881 kb on - strand at 829.881 kb on - strand at 829.881 kb on - strand at 829.881 kb on - strand at 829.932 kb on - strand at 829.959 kb on + strand at 829.960 kb on - strand at 829.960 kb on - strand at 829.960 kb on - strand at 830.008 kb on + strand at 830.009 kb on - strand at 830.009 kb on - strand at 830.010 kb on + strand at 830.011 kb on - strand at 830.049 kb on - strand at 830.079 kb on + strand at 830.079 kb on + strand at 830.079 kb on + strand at 830.080 kb on - strand at 830.080 kb on - strand at 830.087 kb on - strand at 830.174 kb on + strand, within ABIE40_RS30695 at 830.242 kb on + strand, within ABIE40_RS30695 at 830.242 kb on + strand, within ABIE40_RS30695 at 830.243 kb on - strand, within ABIE40_RS30695 at 830.291 kb on + strand, within ABIE40_RS30695 at 830.291 kb on + strand, within ABIE40_RS30695 at 830.350 kb on - strand, within ABIE40_RS30695 at 830.413 kb on + strand, within ABIE40_RS30695 at 830.419 kb on - strand, within ABIE40_RS30695 at 830.469 kb on + strand, within ABIE40_RS30695 at 830.469 kb on + strand, within ABIE40_RS30695 at 830.470 kb on - strand, within ABIE40_RS30695 at 830.470 kb on - strand, within ABIE40_RS30695 at 830.470 kb on - strand, within ABIE40_RS30695
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 1.08545883333333 mM remove 828,154 + +2.3 828,274 + -1.0 828,274 + +0.4 828,275 - +1.3 828,316 - -0.0 828,318 + -0.3 828,319 - +0.1 828,324 + +0.7 828,324 + +0.1 828,346 - +0.7 828,382 + +1.0 828,382 + -0.5 828,382 + +0.3 828,383 - -0.5 828,383 - -0.0 828,383 - -1.7 828,383 - +0.7 828,407 - +0.1 828,427 + -0.9 828,436 + -0.9 828,574 + ABIE40_RS30685 0.40 -0.3 828,684 + -1.3 828,694 + -0.9 828,695 - -0.5 828,749 - -1.6 828,749 - -1.2 828,852 + -0.4 828,912 + +1.3 828,912 + +1.3 828,912 + +0.3 828,913 - +1.2 828,946 + -0.9 829,079 - -1.2 829,247 + ABIE40_RS30690 0.42 -1.4 829,248 - ABIE40_RS30690 0.42 -0.3 829,331 + ABIE40_RS30690 0.62 -1.6 829,381 - ABIE40_RS30690 0.75 -2.7 829,447 - +0.5 829,447 - -0.5 829,491 - -1.4 829,499 + +0.2 829,548 + +0.7 829,548 + -0.6 829,561 + -2.6 829,562 - -0.3 829,609 - +0.6 829,669 + +0.3 829,669 + +0.9 829,670 - +0.1 829,671 + +0.6 829,672 - -1.4 829,672 - +0.7 829,773 + -1.3 829,773 + +1.3 829,773 + -2.4 829,774 - -0.8 829,774 - +1.7 829,774 - -0.7 829,774 - +0.7 829,816 + -2.9 829,841 + +2.3 829,841 + +0.3 829,880 + -2.1 829,880 + +0.6 829,880 + +3.9 829,881 - +0.2 829,881 - +1.3 829,881 - +1.7 829,881 - +0.4 829,932 - -1.0 829,959 + -2.9 829,960 - +1.3 829,960 - +2.3 829,960 - +3.3 830,008 + +2.3 830,009 - +0.3 830,009 - -0.3 830,010 + +0.7 830,011 - -1.3 830,049 - -1.2 830,079 + -1.0 830,079 + -2.4 830,079 + -0.0 830,080 - -1.8 830,080 - -1.0 830,087 - -1.2 830,174 + ABIE40_RS30695 0.21 -1.0 830,242 + ABIE40_RS30695 0.34 -2.2 830,242 + ABIE40_RS30695 0.34 +2.3 830,243 - ABIE40_RS30695 0.34 -1.5 830,291 + ABIE40_RS30695 0.42 +0.5 830,291 + ABIE40_RS30695 0.42 +0.4 830,350 - ABIE40_RS30695 0.53 +2.3 830,413 + ABIE40_RS30695 0.64 +0.3 830,419 - ABIE40_RS30695 0.65 +0.5 830,469 + ABIE40_RS30695 0.74 +0.1 830,469 + ABIE40_RS30695 0.74 +1.3 830,470 - ABIE40_RS30695 0.74 -2.4 830,470 - ABIE40_RS30695 0.74 +1.7 830,470 - ABIE40_RS30695 0.74 -1.2
Or see this region's nucleotide sequence