Experiment: R2A with 1-octen-3-ol 1.08545883333333 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS28015 and ABIE40_RS28020 are separated by 11 nucleotides ABIE40_RS28020 and ABIE40_RS28025 are separated by 319 nucleotides ABIE40_RS28025 and ABIE40_RS28030 are separated by 594 nucleotides ABIE40_RS28030 and ABIE40_RS28035 are separated by 56 nucleotides
ABIE40_RS28015: ABIE40_RS28015 - SDR family oxidoreductase, at 315,525 to 316,454
_RS28015
ABIE40_RS28020: ABIE40_RS28020 - hypothetical protein, at 316,466 to 316,777
_RS28020
ABIE40_RS28025: ABIE40_RS28025 - VOC family protein, at 317,097 to 317,501
_RS28025
ABIE40_RS28030: ABIE40_RS28030 - short-chain dehydrogenase, at 318,096 to 318,212
_RS28030
ABIE40_RS28035: ABIE40_RS28035 - hypothetical protein, at 318,269 to 318,520
_RS28035
Position (kb) 317
318 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 316.183 kb on - strand, within ABIE40_RS28015 at 316.183 kb on - strand, within ABIE40_RS28015 at 316.183 kb on - strand, within ABIE40_RS28015 at 316.183 kb on - strand, within ABIE40_RS28015 at 316.183 kb on - strand, within ABIE40_RS28015 at 316.183 kb on - strand, within ABIE40_RS28015 at 316.183 kb on - strand, within ABIE40_RS28015 at 316.183 kb on - strand, within ABIE40_RS28015 at 316.183 kb on - strand, within ABIE40_RS28015 at 316.183 kb on - strand, within ABIE40_RS28015 at 316.286 kb on - strand, within ABIE40_RS28015 at 316.286 kb on - strand, within ABIE40_RS28015 at 316.286 kb on - strand, within ABIE40_RS28015 at 316.328 kb on + strand, within ABIE40_RS28015 at 316.328 kb on + strand, within ABIE40_RS28015 at 316.329 kb on - strand, within ABIE40_RS28015 at 316.329 kb on - strand, within ABIE40_RS28015 at 316.358 kb on - strand, within ABIE40_RS28015 at 316.446 kb on - strand at 316.564 kb on - strand, within ABIE40_RS28020 at 316.564 kb on - strand, within ABIE40_RS28020 at 316.564 kb on - strand, within ABIE40_RS28020 at 316.564 kb on - strand, within ABIE40_RS28020 at 316.564 kb on - strand, within ABIE40_RS28020 at 316.567 kb on - strand, within ABIE40_RS28020 at 316.567 kb on - strand, within ABIE40_RS28020 at 316.634 kb on - strand, within ABIE40_RS28020 at 316.780 kb on + strand at 316.780 kb on + strand at 316.780 kb on + strand at 316.780 kb on + strand at 316.780 kb on + strand at 316.781 kb on - strand at 316.781 kb on - strand at 317.061 kb on - strand at 317.064 kb on - strand at 317.064 kb on - strand at 317.064 kb on - strand at 317.064 kb on - strand at 317.075 kb on - strand at 317.122 kb on + strand at 317.122 kb on + strand at 317.173 kb on + strand, within ABIE40_RS28025 at 317.173 kb on + strand, within ABIE40_RS28025 at 317.173 kb on + strand, within ABIE40_RS28025 at 317.628 kb on + strand at 317.628 kb on + strand at 317.779 kb on - strand at 317.868 kb on + strand at 317.869 kb on + strand at 317.870 kb on - strand at 317.900 kb on - strand at 317.945 kb on + strand at 317.945 kb on + strand at 317.966 kb on - strand at 317.966 kb on - strand at 318.039 kb on + strand at 318.040 kb on - strand at 318.040 kb on - strand at 318.128 kb on + strand, within ABIE40_RS28030 at 318.129 kb on - strand, within ABIE40_RS28030 at 318.215 kb on - strand at 318.359 kb on + strand, within ABIE40_RS28035 at 318.359 kb on + strand, within ABIE40_RS28035 at 318.479 kb on - strand, within ABIE40_RS28035 at 318.486 kb on - strand, within ABIE40_RS28035 at 318.486 kb on - strand, within ABIE40_RS28035 at 318.486 kb on - strand, within ABIE40_RS28035
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 1.08545883333333 mM remove 316,183 - ABIE40_RS28015 0.71 +0.0 316,183 - ABIE40_RS28015 0.71 -1.9 316,183 - ABIE40_RS28015 0.71 +0.2 316,183 - ABIE40_RS28015 0.71 -0.5 316,183 - ABIE40_RS28015 0.71 +0.7 316,183 - ABIE40_RS28015 0.71 -3.2 316,183 - ABIE40_RS28015 0.71 -0.5 316,183 - ABIE40_RS28015 0.71 -1.4 316,183 - ABIE40_RS28015 0.71 +0.4 316,183 - ABIE40_RS28015 0.71 +0.4 316,286 - ABIE40_RS28015 0.82 +0.4 316,286 - ABIE40_RS28015 0.82 +1.0 316,286 - ABIE40_RS28015 0.82 -2.4 316,328 + ABIE40_RS28015 0.86 +1.3 316,328 + ABIE40_RS28015 0.86 +0.6 316,329 - ABIE40_RS28015 0.86 -1.4 316,329 - ABIE40_RS28015 0.86 -1.1 316,358 - ABIE40_RS28015 0.90 +0.3 316,446 - -0.5 316,564 - ABIE40_RS28020 0.31 +1.3 316,564 - ABIE40_RS28020 0.31 -0.0 316,564 - ABIE40_RS28020 0.31 +0.1 316,564 - ABIE40_RS28020 0.31 +1.2 316,564 - ABIE40_RS28020 0.31 +1.4 316,567 - ABIE40_RS28020 0.32 +1.2 316,567 - ABIE40_RS28020 0.32 +1.4 316,634 - ABIE40_RS28020 0.54 +0.3 316,780 + +0.2 316,780 + -0.8 316,780 + +3.8 316,780 + +2.2 316,780 + +0.2 316,781 - +3.8 316,781 - -0.7 317,061 - -2.3 317,064 - +1.3 317,064 - -0.8 317,064 - +0.3 317,064 - +1.2 317,075 - +3.2 317,122 + -2.4 317,122 + +0.4 317,173 + ABIE40_RS28025 0.19 +1.6 317,173 + ABIE40_RS28025 0.19 -2.4 317,173 + ABIE40_RS28025 0.19 -1.9 317,628 + -0.1 317,628 + +0.3 317,779 - +0.9 317,868 + +0.8 317,869 + +1.2 317,870 - +0.0 317,900 - +0.9 317,945 + -1.6 317,945 + +2.1 317,966 - -1.7 317,966 - +1.4 318,039 + -0.4 318,040 - +0.4 318,040 - -0.1 318,128 + ABIE40_RS28030 0.27 +0.5 318,129 - ABIE40_RS28030 0.28 -0.6 318,215 - +0.2 318,359 + ABIE40_RS28035 0.36 -1.4 318,359 + ABIE40_RS28035 0.36 +2.2 318,479 - ABIE40_RS28035 0.83 +1.3 318,486 - ABIE40_RS28035 0.86 +0.6 318,486 - ABIE40_RS28035 0.86 -1.0 318,486 - ABIE40_RS28035 0.86 -1.1
Or see this region's nucleotide sequence