Experiment: R2A with 1-octen-3-ol 1.08545883333333 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS00590 and ABIE40_RS00595 are separated by 93 nucleotides ABIE40_RS00595 and ABIE40_RS00600 are separated by 18 nucleotides ABIE40_RS00600 and ABIE40_RS00605 are separated by 84 nucleotides
ABIE40_RS00590: ABIE40_RS00590 - ABC transporter ATP-binding protein, at 120,563 to 122,344
_RS00590
ABIE40_RS00595: ABIE40_RS00595 - glucokinase, at 122,438 to 123,457
_RS00595
ABIE40_RS00600: ABIE40_RS00600 - methylglyoxal synthase, at 123,476 to 123,856
_RS00600
ABIE40_RS00605: ABIE40_RS00605 - penicillin-insensitive murein endopeptidase, at 123,941 to 125,008
_RS00605
Position (kb) 122
123
124 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 122.372 kb on - strand at 122.372 kb on - strand at 122.372 kb on - strand at 122.372 kb on - strand at 122.372 kb on - strand at 122.404 kb on - strand at 122.406 kb on - strand at 122.429 kb on - strand at 122.440 kb on - strand at 122.496 kb on + strand at 122.541 kb on + strand, within ABIE40_RS00595 at 122.541 kb on + strand, within ABIE40_RS00595 at 122.541 kb on + strand, within ABIE40_RS00595 at 122.541 kb on + strand, within ABIE40_RS00595 at 122.541 kb on + strand, within ABIE40_RS00595 at 122.542 kb on - strand, within ABIE40_RS00595 at 122.641 kb on + strand, within ABIE40_RS00595 at 122.655 kb on + strand, within ABIE40_RS00595 at 122.655 kb on + strand, within ABIE40_RS00595 at 122.655 kb on + strand, within ABIE40_RS00595 at 122.712 kb on + strand, within ABIE40_RS00595 at 122.712 kb on + strand, within ABIE40_RS00595 at 122.712 kb on + strand, within ABIE40_RS00595 at 122.712 kb on + strand, within ABIE40_RS00595 at 122.712 kb on + strand, within ABIE40_RS00595 at 122.712 kb on + strand, within ABIE40_RS00595 at 122.713 kb on - strand, within ABIE40_RS00595 at 122.713 kb on - strand, within ABIE40_RS00595 at 122.796 kb on + strand, within ABIE40_RS00595 at 122.797 kb on - strand, within ABIE40_RS00595 at 122.835 kb on + strand, within ABIE40_RS00595 at 122.835 kb on + strand, within ABIE40_RS00595 at 122.902 kb on + strand, within ABIE40_RS00595 at 122.902 kb on + strand, within ABIE40_RS00595 at 122.903 kb on - strand, within ABIE40_RS00595 at 122.905 kb on - strand, within ABIE40_RS00595 at 122.905 kb on - strand, within ABIE40_RS00595 at 122.983 kb on + strand, within ABIE40_RS00595 at 123.178 kb on + strand, within ABIE40_RS00595 at 123.178 kb on + strand, within ABIE40_RS00595 at 123.178 kb on + strand, within ABIE40_RS00595 at 123.178 kb on + strand, within ABIE40_RS00595 at 123.179 kb on - strand, within ABIE40_RS00595 at 123.269 kb on + strand, within ABIE40_RS00595 at 123.434 kb on - strand at 123.434 kb on - strand at 123.536 kb on - strand, within ABIE40_RS00600 at 123.540 kb on + strand, within ABIE40_RS00600 at 123.541 kb on - strand, within ABIE40_RS00600 at 123.902 kb on - strand at 123.902 kb on - strand at 123.902 kb on - strand at 123.902 kb on - strand at 123.902 kb on - strand at 123.902 kb on - strand at 123.902 kb on - strand at 123.903 kb on + strand at 123.904 kb on - strand at 123.938 kb on + strand at 124.064 kb on + strand, within ABIE40_RS00605 at 124.324 kb on - strand, within ABIE40_RS00605 at 124.425 kb on + strand, within ABIE40_RS00605
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 1.08545883333333 mM remove 122,372 - +0.2 122,372 - -1.2 122,372 - -2.5 122,372 - +0.5 122,372 - +0.0 122,404 - +0.3 122,406 - -3.0 122,429 - +0.1 122,440 - -3.0 122,496 + +2.0 122,541 + ABIE40_RS00595 0.10 +0.4 122,541 + ABIE40_RS00595 0.10 -0.0 122,541 + ABIE40_RS00595 0.10 -0.0 122,541 + ABIE40_RS00595 0.10 +1.0 122,541 + ABIE40_RS00595 0.10 -0.6 122,542 - ABIE40_RS00595 0.10 -0.6 122,641 + ABIE40_RS00595 0.20 -2.1 122,655 + ABIE40_RS00595 0.21 -1.3 122,655 + ABIE40_RS00595 0.21 -0.3 122,655 + ABIE40_RS00595 0.21 -1.5 122,712 + ABIE40_RS00595 0.27 -2.1 122,712 + ABIE40_RS00595 0.27 -0.7 122,712 + ABIE40_RS00595 0.27 -1.8 122,712 + ABIE40_RS00595 0.27 -1.2 122,712 + ABIE40_RS00595 0.27 +0.4 122,712 + ABIE40_RS00595 0.27 +0.4 122,713 - ABIE40_RS00595 0.27 +0.4 122,713 - ABIE40_RS00595 0.27 -3.0 122,796 + ABIE40_RS00595 0.35 -1.7 122,797 - ABIE40_RS00595 0.35 -1.5 122,835 + ABIE40_RS00595 0.39 +1.0 122,835 + ABIE40_RS00595 0.39 +0.7 122,902 + ABIE40_RS00595 0.45 +0.4 122,902 + ABIE40_RS00595 0.45 -0.0 122,903 - ABIE40_RS00595 0.46 -2.0 122,905 - ABIE40_RS00595 0.46 +0.4 122,905 - ABIE40_RS00595 0.46 -1.0 122,983 + ABIE40_RS00595 0.53 -1.3 123,178 + ABIE40_RS00595 0.73 +2.0 123,178 + ABIE40_RS00595 0.73 +1.0 123,178 + ABIE40_RS00595 0.73 +2.0 123,178 + ABIE40_RS00595 0.73 -0.3 123,179 - ABIE40_RS00595 0.73 -1.3 123,269 + ABIE40_RS00595 0.81 -0.3 123,434 - -1.3 123,434 - -1.6 123,536 - ABIE40_RS00600 0.16 -1.2 123,540 + ABIE40_RS00600 0.17 +0.7 123,541 - ABIE40_RS00600 0.17 -1.9 123,902 - +0.3 123,902 - -3.2 123,902 - -0.1 123,902 - -0.3 123,902 - -1.1 123,902 - +1.4 123,902 - -1.1 123,903 + -3.3 123,904 - -0.2 123,938 + +0.7 124,064 + ABIE40_RS00605 0.12 -0.4 124,324 - ABIE40_RS00605 0.36 +0.2 124,425 + ABIE40_RS00605 0.45 -0.1
Or see this region's nucleotide sequence