Experiment: R2A with 6-Pentyl-2H-pyran-2-one 0.835572666666667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS29070 and ABIE40_RS29075 are separated by 473 nucleotides ABIE40_RS29075 and ABIE40_RS29080 are separated by 88 nucleotides
ABIE40_RS29070: ABIE40_RS29070 - hypothetical protein, at 512,752 to 513,048
_RS29070
ABIE40_RS29075: ABIE40_RS29075 - LysR family transcriptional regulator, at 513,522 to 514,424
_RS29075
ABIE40_RS29080: ABIE40_RS29080 - NADP-dependent oxidoreductase, at 514,513 to 515,529
_RS29080
Position (kb) 513
514
515 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 512.572 kb on - strand at 512.572 kb on - strand at 512.583 kb on + strand at 512.584 kb on - strand at 512.601 kb on + strand at 512.601 kb on + strand at 512.601 kb on + strand at 512.601 kb on + strand at 512.602 kb on - strand at 512.602 kb on - strand at 512.602 kb on - strand at 512.602 kb on - strand at 512.602 kb on - strand at 512.648 kb on + strand at 512.879 kb on + strand, within ABIE40_RS29070 at 512.879 kb on + strand, within ABIE40_RS29070 at 512.880 kb on - strand, within ABIE40_RS29070 at 512.880 kb on - strand, within ABIE40_RS29070 at 512.952 kb on + strand, within ABIE40_RS29070 at 512.952 kb on + strand, within ABIE40_RS29070 at 512.952 kb on + strand, within ABIE40_RS29070 at 513.073 kb on + strand at 513.073 kb on + strand at 513.074 kb on - strand at 513.074 kb on - strand at 513.145 kb on + strand at 513.190 kb on + strand at 513.191 kb on - strand at 513.243 kb on + strand at 513.244 kb on - strand at 513.244 kb on - strand at 513.244 kb on - strand at 513.244 kb on - strand at 513.407 kb on + strand at 513.407 kb on + strand at 513.407 kb on + strand at 513.408 kb on - strand at 513.421 kb on + strand at 513.491 kb on + strand at 513.492 kb on - strand at 513.492 kb on - strand at 513.534 kb on + strand at 513.534 kb on + strand at 513.535 kb on - strand at 513.535 kb on - strand at 513.543 kb on - strand at 513.602 kb on + strand at 513.603 kb on - strand at 513.603 kb on - strand at 513.603 kb on - strand at 513.603 kb on - strand at 513.603 kb on - strand at 513.603 kb on - strand at 513.895 kb on + strand, within ABIE40_RS29075 at 513.896 kb on - strand, within ABIE40_RS29075 at 513.896 kb on - strand, within ABIE40_RS29075 at 513.896 kb on - strand, within ABIE40_RS29075 at 513.910 kb on + strand, within ABIE40_RS29075 at 513.910 kb on + strand, within ABIE40_RS29075 at 513.911 kb on - strand, within ABIE40_RS29075 at 513.911 kb on - strand, within ABIE40_RS29075 at 513.911 kb on - strand, within ABIE40_RS29075 at 513.911 kb on - strand, within ABIE40_RS29075 at 513.926 kb on - strand, within ABIE40_RS29075 at 513.926 kb on - strand, within ABIE40_RS29075 at 514.016 kb on + strand, within ABIE40_RS29075 at 514.017 kb on - strand, within ABIE40_RS29075 at 514.017 kb on - strand, within ABIE40_RS29075 at 514.017 kb on - strand, within ABIE40_RS29075 at 514.017 kb on - strand, within ABIE40_RS29075 at 514.351 kb on + strand at 514.352 kb on - strand at 514.352 kb on - strand at 514.476 kb on + strand at 514.476 kb on + strand at 514.519 kb on - strand at 514.573 kb on + strand at 514.574 kb on - strand at 514.574 kb on - strand at 514.574 kb on - strand at 514.657 kb on + strand, within ABIE40_RS29080 at 514.658 kb on - strand, within ABIE40_RS29080 at 514.672 kb on + strand, within ABIE40_RS29080 at 514.799 kb on - strand, within ABIE40_RS29080 at 514.846 kb on + strand, within ABIE40_RS29080 at 514.847 kb on - strand, within ABIE40_RS29080 at 514.855 kb on + strand, within ABIE40_RS29080 at 514.855 kb on + strand, within ABIE40_RS29080 at 514.855 kb on + strand, within ABIE40_RS29080 at 514.855 kb on + strand, within ABIE40_RS29080 at 514.855 kb on + strand, within ABIE40_RS29080 at 514.855 kb on + strand, within ABIE40_RS29080 at 514.855 kb on + strand, within ABIE40_RS29080 at 514.855 kb on + strand, within ABIE40_RS29080 at 514.855 kb on + strand, within ABIE40_RS29080 at 514.856 kb on - strand, within ABIE40_RS29080 at 514.856 kb on - strand, within ABIE40_RS29080 at 514.856 kb on - strand, within ABIE40_RS29080 at 514.856 kb on - strand, within ABIE40_RS29080 at 514.856 kb on - strand, within ABIE40_RS29080 at 514.856 kb on - strand, within ABIE40_RS29080 at 514.856 kb on - strand, within ABIE40_RS29080 at 514.908 kb on + strand, within ABIE40_RS29080 at 514.909 kb on - strand, within ABIE40_RS29080 at 515.176 kb on + strand, within ABIE40_RS29080 at 515.177 kb on - strand, within ABIE40_RS29080
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 6-Pentyl-2H-pyran-2-one 0.835572666666667 mM remove 512,572 - -1.3 512,572 - -1.0 512,583 + -0.4 512,584 - +0.0 512,601 + +0.7 512,601 + +0.2 512,601 + +0.3 512,601 + -0.8 512,602 - +1.3 512,602 - -0.2 512,602 - -0.1 512,602 - +1.4 512,602 - -0.3 512,648 + -0.1 512,879 + ABIE40_RS29070 0.43 +0.8 512,879 + ABIE40_RS29070 0.43 -0.2 512,880 - ABIE40_RS29070 0.43 +0.4 512,880 - ABIE40_RS29070 0.43 +0.1 512,952 + ABIE40_RS29070 0.67 +0.8 512,952 + ABIE40_RS29070 0.67 -1.4 512,952 + ABIE40_RS29070 0.67 +0.9 513,073 + +2.0 513,073 + +1.7 513,074 - -0.5 513,074 - +0.7 513,145 + +1.4 513,190 + +0.5 513,191 - +2.4 513,243 + +0.8 513,244 - -1.2 513,244 - -1.9 513,244 - -2.5 513,244 - +2.0 513,407 + -0.1 513,407 + +1.0 513,407 + -0.6 513,408 - +0.9 513,421 + +0.0 513,491 + +0.9 513,492 - -1.7 513,492 - +0.2 513,534 + -0.9 513,534 + -1.1 513,535 - -0.8 513,535 - -0.6 513,543 - +0.6 513,602 + +0.0 513,603 - +0.2 513,603 - -0.0 513,603 - -0.4 513,603 - -0.2 513,603 - +0.6 513,603 - +0.2 513,895 + ABIE40_RS29075 0.41 +0.3 513,896 - ABIE40_RS29075 0.41 +1.0 513,896 - ABIE40_RS29075 0.41 -2.1 513,896 - ABIE40_RS29075 0.41 +0.3 513,910 + ABIE40_RS29075 0.43 +2.6 513,910 + ABIE40_RS29075 0.43 +0.0 513,911 - ABIE40_RS29075 0.43 +1.3 513,911 - ABIE40_RS29075 0.43 +0.9 513,911 - ABIE40_RS29075 0.43 +0.4 513,911 - ABIE40_RS29075 0.43 +0.4 513,926 - ABIE40_RS29075 0.45 +1.3 513,926 - ABIE40_RS29075 0.45 +0.5 514,016 + ABIE40_RS29075 0.55 +3.4 514,017 - ABIE40_RS29075 0.55 +0.5 514,017 - ABIE40_RS29075 0.55 +0.5 514,017 - ABIE40_RS29075 0.55 +0.1 514,017 - ABIE40_RS29075 0.55 +1.9 514,351 + -0.2 514,352 - +0.4 514,352 - -0.5 514,476 + -0.5 514,476 + -0.3 514,519 - +0.2 514,573 + +0.2 514,574 - -0.2 514,574 - -1.7 514,574 - -3.2 514,657 + ABIE40_RS29080 0.14 +0.3 514,658 - ABIE40_RS29080 0.14 +1.4 514,672 + ABIE40_RS29080 0.16 +0.0 514,799 - ABIE40_RS29080 0.28 +1.5 514,846 + ABIE40_RS29080 0.33 -0.2 514,847 - ABIE40_RS29080 0.33 +0.4 514,855 + ABIE40_RS29080 0.34 -0.1 514,855 + ABIE40_RS29080 0.34 +0.4 514,855 + ABIE40_RS29080 0.34 +0.9 514,855 + ABIE40_RS29080 0.34 -0.0 514,855 + ABIE40_RS29080 0.34 -0.3 514,855 + ABIE40_RS29080 0.34 +0.7 514,855 + ABIE40_RS29080 0.34 +0.2 514,855 + ABIE40_RS29080 0.34 +0.4 514,855 + ABIE40_RS29080 0.34 +0.4 514,856 - ABIE40_RS29080 0.34 +0.6 514,856 - ABIE40_RS29080 0.34 +2.4 514,856 - ABIE40_RS29080 0.34 +0.0 514,856 - ABIE40_RS29080 0.34 -0.6 514,856 - ABIE40_RS29080 0.34 -0.9 514,856 - ABIE40_RS29080 0.34 +0.2 514,856 - ABIE40_RS29080 0.34 -1.7 514,908 + ABIE40_RS29080 0.39 -0.1 514,909 - ABIE40_RS29080 0.39 -0.2 515,176 + ABIE40_RS29080 0.65 -0.5 515,177 - ABIE40_RS29080 0.65 +0.3
Or see this region's nucleotide sequence