Experiment: R2A with 6-Pentyl-2H-pyran-2-one 0.835572666666667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS01745 and ABIE40_RS01750 are separated by 91 nucleotides ABIE40_RS01750 and ABIE40_RS01755 are separated by 332 nucleotides ABIE40_RS01755 and ABIE40_RS01760 are separated by 3 nucleotides
ABIE40_RS01745: ABIE40_RS01745 - tryptophan--tRNA ligase, at 342,221 to 343,285
_RS01745
ABIE40_RS01750: ABIE40_RS01750 - VOC family protein, at 343,377 to 343,778
_RS01750
ABIE40_RS01755: ABIE40_RS01755 - D-Ala-D-Ala carboxypeptidase family metallohydrolase, at 344,111 to 344,539
_RS01755
ABIE40_RS01760: ABIE40_RS01760 - murein biosynthesis integral membrane protein MurJ, at 344,543 to 346,124
_RS01760
Position (kb) 343
344 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 343.302 kb on - strand at 343.355 kb on - strand at 343.426 kb on + strand, within ABIE40_RS01750 at 343.524 kb on - strand, within ABIE40_RS01750 at 343.717 kb on + strand, within ABIE40_RS01750 at 343.718 kb on - strand, within ABIE40_RS01750 at 343.738 kb on + strand at 343.738 kb on + strand at 343.739 kb on - strand at 343.818 kb on - strand at 343.831 kb on - strand at 343.981 kb on - strand at 344.116 kb on + strand at 344.116 kb on + strand at 344.116 kb on + strand at 344.116 kb on + strand at 344.117 kb on - strand at 344.117 kb on - strand at 344.117 kb on - strand at 344.117 kb on - strand at 344.117 kb on - strand at 344.117 kb on - strand at 344.117 kb on - strand at 344.117 kb on - strand at 344.117 kb on - strand at 344.124 kb on + strand at 344.124 kb on + strand at 344.125 kb on - strand at 344.125 kb on - strand at 344.125 kb on - strand at 344.234 kb on + strand, within ABIE40_RS01755 at 344.235 kb on - strand, within ABIE40_RS01755 at 344.235 kb on - strand, within ABIE40_RS01755 at 344.236 kb on + strand, within ABIE40_RS01755 at 344.236 kb on + strand, within ABIE40_RS01755 at 344.237 kb on - strand, within ABIE40_RS01755 at 344.237 kb on - strand, within ABIE40_RS01755 at 344.237 kb on - strand, within ABIE40_RS01755 at 344.237 kb on - strand, within ABIE40_RS01755 at 344.302 kb on + strand, within ABIE40_RS01755 at 344.303 kb on - strand, within ABIE40_RS01755 at 344.303 kb on - strand, within ABIE40_RS01755 at 344.492 kb on - strand, within ABIE40_RS01755 at 344.531 kb on + strand at 344.531 kb on + strand at 344.531 kb on + strand at 344.531 kb on + strand at 344.531 kb on + strand at 344.531 kb on + strand at 344.531 kb on + strand at 344.531 kb on + strand at 344.532 kb on - strand at 344.532 kb on - strand at 344.532 kb on - strand at 344.532 kb on - strand at 344.532 kb on - strand at 344.532 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 6-Pentyl-2H-pyran-2-one 0.835572666666667 mM remove 343,302 - +0.2 343,355 - -1.2 343,426 + ABIE40_RS01750 0.12 +0.9 343,524 - ABIE40_RS01750 0.37 +0.2 343,717 + ABIE40_RS01750 0.85 +1.1 343,718 - ABIE40_RS01750 0.85 +0.2 343,738 + +1.2 343,738 + -0.8 343,739 - +0.1 343,818 - -0.7 343,831 - -1.3 343,981 - -0.2 344,116 + -2.4 344,116 + -0.5 344,116 + -1.5 344,116 + -0.7 344,117 - -0.1 344,117 - -2.4 344,117 - -0.9 344,117 - -0.5 344,117 - -0.2 344,117 - -2.0 344,117 - -0.4 344,117 - +0.2 344,117 - -2.1 344,124 + +0.8 344,124 + -0.6 344,125 - +0.6 344,125 - -2.8 344,125 - -1.8 344,234 + ABIE40_RS01755 0.29 -1.7 344,235 - ABIE40_RS01755 0.29 +1.2 344,235 - ABIE40_RS01755 0.29 +2.2 344,236 + ABIE40_RS01755 0.29 -0.3 344,236 + ABIE40_RS01755 0.29 -0.5 344,237 - ABIE40_RS01755 0.29 -1.5 344,237 - ABIE40_RS01755 0.29 -0.4 344,237 - ABIE40_RS01755 0.29 -1.1 344,237 - ABIE40_RS01755 0.29 +1.6 344,302 + ABIE40_RS01755 0.45 -0.8 344,303 - ABIE40_RS01755 0.45 -0.5 344,303 - ABIE40_RS01755 0.45 +0.0 344,492 - ABIE40_RS01755 0.89 +0.0 344,531 + -1.7 344,531 + -1.1 344,531 + -1.4 344,531 + -1.2 344,531 + +0.0 344,531 + -0.5 344,531 + -1.4 344,531 + -0.8 344,532 - +1.3 344,532 - -0.4 344,532 - +1.2 344,532 - +1.1 344,532 - +0.1 344,532 - +1.2
Or see this region's nucleotide sequence