Experiment: R2A no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS30530 and ABIE40_RS30535 are separated by 822 nucleotides ABIE40_RS30535 and ABIE40_RS30540 are separated by 580 nucleotides
ABIE40_RS30530: ABIE40_RS30530 - MOSC domain-containing protein, at 790,624 to 791,166
_RS30530
ABIE40_RS30535: ABIE40_RS30535 - hypothetical protein, at 791,989 to 792,189
_RS30535
ABIE40_RS30540: ABIE40_RS30540 - DUF4142 domain-containing protein, at 792,770 to 793,261
_RS30540
Position (kb) 791
792
793 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 791.091 kb on + strand, within ABIE40_RS30530 at 791.091 kb on + strand, within ABIE40_RS30530 at 791.091 kb on + strand, within ABIE40_RS30530 at 791.091 kb on + strand, within ABIE40_RS30530 at 791.091 kb on + strand, within ABIE40_RS30530 at 791.091 kb on + strand, within ABIE40_RS30530 at 791.092 kb on - strand, within ABIE40_RS30530 at 791.092 kb on - strand, within ABIE40_RS30530 at 791.092 kb on - strand, within ABIE40_RS30530 at 791.095 kb on + strand, within ABIE40_RS30530 at 791.095 kb on + strand, within ABIE40_RS30530 at 791.095 kb on + strand, within ABIE40_RS30530 at 791.096 kb on - strand, within ABIE40_RS30530 at 791.104 kb on + strand, within ABIE40_RS30530 at 791.105 kb on - strand, within ABIE40_RS30530 at 791.166 kb on + strand at 791.166 kb on + strand at 791.202 kb on + strand at 791.222 kb on + strand at 791.223 kb on - strand at 791.235 kb on + strand at 791.268 kb on + strand at 791.268 kb on + strand at 791.441 kb on + strand at 791.442 kb on - strand at 791.491 kb on - strand at 791.543 kb on + strand at 791.543 kb on + strand at 791.543 kb on + strand at 791.544 kb on - strand at 791.544 kb on - strand at 791.544 kb on - strand at 791.544 kb on - strand at 791.544 kb on - strand at 791.631 kb on - strand at 791.663 kb on + strand at 791.663 kb on + strand at 791.664 kb on - strand at 791.664 kb on - strand at 791.704 kb on + strand at 791.704 kb on + strand at 791.704 kb on + strand at 791.882 kb on + strand at 791.883 kb on - strand at 791.936 kb on + strand at 791.936 kb on + strand at 791.937 kb on - strand at 791.987 kb on + strand at 792.154 kb on + strand, within ABIE40_RS30535 at 792.154 kb on + strand, within ABIE40_RS30535 at 792.194 kb on + strand at 792.195 kb on - strand at 792.287 kb on - strand at 792.287 kb on - strand at 792.417 kb on + strand at 792.418 kb on - strand at 792.475 kb on + strand at 792.476 kb on - strand at 792.653 kb on + strand at 792.653 kb on + strand at 792.654 kb on - strand at 792.718 kb on - strand at 792.727 kb on - strand at 792.779 kb on - strand at 792.891 kb on + strand, within ABIE40_RS30540 at 792.891 kb on + strand, within ABIE40_RS30540 at 792.911 kb on + strand, within ABIE40_RS30540 at 792.912 kb on - strand, within ABIE40_RS30540 at 792.927 kb on + strand, within ABIE40_RS30540 at 792.928 kb on - strand, within ABIE40_RS30540 at 793.040 kb on + strand, within ABIE40_RS30540 at 793.041 kb on - strand, within ABIE40_RS30540 at 793.075 kb on + strand, within ABIE40_RS30540 at 793.076 kb on - strand, within ABIE40_RS30540
Per-strain Table
Position Strand Gene LocusTag Fraction R2A no stress control remove 791,091 + ABIE40_RS30530 0.86 -0.2 791,091 + ABIE40_RS30530 0.86 -0.3 791,091 + ABIE40_RS30530 0.86 -1.3 791,091 + ABIE40_RS30530 0.86 -2.1 791,091 + ABIE40_RS30530 0.86 -0.7 791,091 + ABIE40_RS30530 0.86 +0.5 791,092 - ABIE40_RS30530 0.86 +0.1 791,092 - ABIE40_RS30530 0.86 -0.5 791,092 - ABIE40_RS30530 0.86 +1.5 791,095 + ABIE40_RS30530 0.87 -1.3 791,095 + ABIE40_RS30530 0.87 -0.4 791,095 + ABIE40_RS30530 0.87 -0.5 791,096 - ABIE40_RS30530 0.87 +0.8 791,104 + ABIE40_RS30530 0.88 -1.2 791,105 - ABIE40_RS30530 0.89 -0.3 791,166 + -0.0 791,166 + +0.8 791,202 + +1.8 791,222 + +0.7 791,223 - +0.5 791,235 + +0.8 791,268 + -0.3 791,268 + +1.7 791,441 + -2.2 791,442 - +1.1 791,491 - +1.8 791,543 + +0.7 791,543 + -0.7 791,543 + +0.3 791,544 - -1.1 791,544 - -1.9 791,544 - +0.2 791,544 - +1.0 791,544 - -0.7 791,631 - +1.1 791,663 + -0.7 791,663 + -0.2 791,664 - -0.2 791,664 - +0.4 791,704 + -1.4 791,704 + +0.6 791,704 + +0.8 791,882 + +0.4 791,883 - -0.3 791,936 + +2.5 791,936 + -0.6 791,937 - +0.6 791,987 + +0.8 792,154 + ABIE40_RS30535 0.82 -0.5 792,154 + ABIE40_RS30535 0.82 -2.3 792,194 + +0.8 792,195 - +1.8 792,287 - +0.1 792,287 - +0.1 792,417 + -1.2 792,418 - -1.9 792,475 + +0.4 792,476 - +0.6 792,653 + +0.3 792,653 + -0.3 792,654 - +0.1 792,718 - -2.2 792,727 - -1.9 792,779 - +1.8 792,891 + ABIE40_RS30540 0.25 +0.3 792,891 + ABIE40_RS30540 0.25 +1.4 792,911 + ABIE40_RS30540 0.29 -1.3 792,912 - ABIE40_RS30540 0.29 -0.2 792,927 + ABIE40_RS30540 0.32 -2.2 792,928 - ABIE40_RS30540 0.32 -0.1 793,040 + ABIE40_RS30540 0.55 +3.4 793,041 - ABIE40_RS30540 0.55 +0.3 793,075 + ABIE40_RS30540 0.62 -0.6 793,076 - ABIE40_RS30540 0.62 +1.6
Or see this region's nucleotide sequence