Strain Fitness in Castellaniella sp019104865 MT123 around ABCV34_RS05770

Experiment: Survival; Treatment=FW300; TreatmentDuration=2hrs; Outgrowth=R2A_Kan10_Lactate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW300; TreatmentDuration=2hrs; Outgrowth=R2A_Kan10_Lactate
1,251,837	+		ABCV34_RS05760	0.24	-0.8
1,251,837	+		ABCV34_RS05760	0.24	-1.2
1,251,837	+		ABCV34_RS05760	0.24	+0.1
1,251,837	+		ABCV34_RS05760	0.24	-2.1
1,251,837	+		ABCV34_RS05760	0.24	-1.2
1,251,837	+		ABCV34_RS05760	0.24	-1.9
1,251,837	+		ABCV34_RS05760	0.24	-0.8
1,251,837	+		ABCV34_RS05760	0.24	+0.5
1,251,838	-		ABCV34_RS05760	0.24	-1.6
1,251,838	-		ABCV34_RS05760	0.24	-0.3
1,251,838	-		ABCV34_RS05760	0.24	-2.6
1,251,838	-		ABCV34_RS05760	0.24	-0.8
1,251,838	-		ABCV34_RS05760	0.24	-1.8
1,251,838	-		ABCV34_RS05760	0.24	+1.3
1,251,838	-		ABCV34_RS05760	0.24	-0.4
1,251,838	-		ABCV34_RS05760	0.24	-3.3
1,251,839	+		ABCV34_RS05760	0.24	+0.7
1,251,839	+		ABCV34_RS05760	0.24	-1.0
1,251,840	-		ABCV34_RS05760	0.24	-1.6
1,251,840	-		ABCV34_RS05760	0.24	-0.1
1,251,840	-		ABCV34_RS05760	0.24	-0.6
1,251,933	-		ABCV34_RS05760	0.38	-0.9
1,251,933	-		ABCV34_RS05760	0.38	-0.8
1,251,933	-		ABCV34_RS05760	0.38	-0.3
1,252,101	+		ABCV34_RS05760	0.63	-1.9
1,252,101	+		ABCV34_RS05760	0.63	-1.0
1,252,101	+		ABCV34_RS05760	0.63	-1.2
1,252,101	+		ABCV34_RS05760	0.63	-2.4
1,252,101	+		ABCV34_RS05760	0.63	-0.8
1,252,101	+		ABCV34_RS05760	0.63	-1.2
1,252,101	+		ABCV34_RS05760	0.63	-0.1
1,252,101	+		ABCV34_RS05760	0.63	-0.4
1,252,101	+		ABCV34_RS05760	0.63	-1.2
1,252,101	+		ABCV34_RS05760	0.63	-1.9
1,252,101	+		ABCV34_RS05760	0.63	+2.9
1,252,101	+		ABCV34_RS05760	0.63	-0.5
1,252,101	+		ABCV34_RS05760	0.63	-1.0
1,252,101	+		ABCV34_RS05760	0.63	+0.9
1,252,102	-		ABCV34_RS05760	0.63	-1.8
1,252,102	-		ABCV34_RS05760	0.63	+0.2
1,252,102	-		ABCV34_RS05760	0.63	-1.3
1,252,102	-		ABCV34_RS05760	0.63	-1.7
1,252,102	-		ABCV34_RS05760	0.63	-0.8
1,252,102	-		ABCV34_RS05760	0.63	-0.9
1,252,102	-		ABCV34_RS05760	0.63	-2.2
1,252,102	-		ABCV34_RS05760	0.63	-0.2
1,252,102	-		ABCV34_RS05760	0.63	-1.1
1,252,102	-		ABCV34_RS05760	0.63	-1.7
1,252,102	-		ABCV34_RS05760	0.63	+1.4
1,252,102	-		ABCV34_RS05760	0.63	-1.6
1,252,102	-		ABCV34_RS05760	0.63	-2.9
1,252,102	-		ABCV34_RS05760	0.63	-1.0
1,252,132	-		ABCV34_RS05760	0.67	+1.6
1,252,132	-		ABCV34_RS05760	0.67	-2.6
1,252,360	+				-2.1
1,252,360	+				+1.0
1,252,361	-				-1.3
1,252,361	-				-0.6
1,252,361	-				-1.1
1,252,366	+				-2.1
1,252,366	+				-1.5
1,252,366	+				-1.9
1,252,366	+				-0.3
1,252,367	-				+0.4
1,252,374	+				-0.9
1,252,375	-				-2.3
1,252,375	-				+0.3
1,252,380	-				-0.6
1,252,435	+		ABCV34_RS05765	0.17	-2.1
1,252,436	-		ABCV34_RS05765	0.17	-2.0
1,252,501	+		ABCV34_RS05765	0.33	-2.1
1,252,501	+		ABCV34_RS05765	0.33	-2.3
1,252,501	+		ABCV34_RS05765	0.33	-1.7
1,252,502	-		ABCV34_RS05765	0.34	-0.7
1,252,537	+		ABCV34_RS05765	0.42	-0.2
1,252,538	-		ABCV34_RS05765	0.42	-0.4
1,252,648	+		ABCV34_RS05765	0.69	-0.2
1,252,648	+		ABCV34_RS05765	0.69	+2.0
1,252,648	+		ABCV34_RS05765	0.69	+0.6
1,252,648	+		ABCV34_RS05765	0.69	-0.8
1,252,648	+		ABCV34_RS05765	0.69	-1.5
1,252,648	+		ABCV34_RS05765	0.69	-1.2
1,252,649	-		ABCV34_RS05765	0.70	-1.2
1,252,649	-		ABCV34_RS05765	0.70	-0.5
1,252,649	-		ABCV34_RS05765	0.70	-1.6
1,252,649	-		ABCV34_RS05765	0.70	-2.4
1,252,649	-		ABCV34_RS05765	0.70	-0.8
1,252,649	-		ABCV34_RS05765	0.70	-1.6
1,252,973	+		ABCV34_RS05770	0.43	-2.3
1,253,098	+		ABCV34_RS05770	0.73	-0.8
1,253,098	+		ABCV34_RS05770	0.73	+0.1
1,253,098	+		ABCV34_RS05770	0.73	-1.8
1,253,098	+		ABCV34_RS05770	0.73	+0.6
1,253,098	+		ABCV34_RS05770	0.73	-0.2
1,253,098	+		ABCV34_RS05770	0.73	-1.3
1,253,098	+		ABCV34_RS05770	0.73	-1.8
1,253,099	-		ABCV34_RS05770	0.73	-0.3
1,253,099	-		ABCV34_RS05770	0.73	+0.7
1,253,099	-		ABCV34_RS05770	0.73	+0.4
1,253,099	-		ABCV34_RS05770	0.73	-2.0
1,253,099	-		ABCV34_RS05770	0.73	-1.4
1,253,099	-		ABCV34_RS05770	0.73	-1.9
1,253,099	-		ABCV34_RS05770	0.73	-1.9
1,253,099	-		ABCV34_RS05770	0.73	-1.3
1,253,099	-		ABCV34_RS05770	0.73	-0.7
1,253,099	-		ABCV34_RS05770	0.73	-1.4
1,253,158	-		ABCV34_RS05770	0.87	-1.4
1,253,158	-		ABCV34_RS05770	0.87	-0.9
1,253,176	+				+0.6
1,253,176	+				-2.4
1,253,176	+				-0.4
1,253,177	-				+0.4
1,253,302	+				-0.1
1,253,303	-				-1.9
1,253,303	-				-1.2
1,253,322	+				+2.2
1,253,323	-				-1.6
1,253,323	-				+0.3
1,253,323	-				-1.8
1,253,354	+				-0.6
1,253,354	+				+1.4
1,253,355	-				-1.6
1,253,355	-				-1.8
1,253,355	-				-1.1
1,253,355	-				-1.6
1,253,355	-				-1.5
1,253,355	-				+0.3
1,253,355	-				+1.0
1,253,470	+				-0.4
1,253,470	+				-1.0
1,253,470	+				+0.1
1,253,470	+				-1.1
1,253,470	+				-1.0
1,253,470	+				+0.7
1,253,470	+				-0.3
1,253,470	+				-0.9
1,253,470	+				+0.0
1,253,471	-				-1.5
1,253,471	-				-0.1
1,253,471	-				-0.8
1,253,471	-				-1.3
1,253,471	-				-0.4
1,253,471	-				-2.7
1,253,471	-				+0.3
1,253,471	-				-3.2
1,253,471	-				-0.5
1,253,482	+				-0.6
1,253,483	-				-0.5
1,253,483	-				-1.3
1,253,483	-				-0.5
1,253,483	-				-1.1
1,253,483	-				-2.4
1,253,542	-				-1.8
1,253,548	+				-1.5
1,253,894	+		ABCV34_RS05775	0.41	-0.3
1,253,894	+		ABCV34_RS05775	0.41	-2.8
1,253,895	-		ABCV34_RS05775	0.42	-1.0
1,253,895	-		ABCV34_RS05775	0.42	-2.1
1,253,930	+		ABCV34_RS05775	0.47	-1.2
1,253,930	+		ABCV34_RS05775	0.47	+0.9
1,253,930	+		ABCV34_RS05775	0.47	-3.7
1,253,930	+		ABCV34_RS05775	0.47	-0.3
1,253,930	+		ABCV34_RS05775	0.47	-1.3
1,253,930	+		ABCV34_RS05775	0.47	+0.8
1,253,930	+		ABCV34_RS05775	0.47	-0.4
1,253,931	-		ABCV34_RS05775	0.47	-1.3
1,253,931	-		ABCV34_RS05775	0.47	-1.7
1,253,931	-		ABCV34_RS05775	0.47	-0.8