Experiment: Survival; Treatment=FW300; TreatmentDuration=2hrs; Outgrowth=R2A_Kan10_Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABCV34_RS04595 and ABCV34_RS04600 are separated by 540 nucleotides
ABCV34_RS04595: ABCV34_RS04595 - glucose-1-phosphate cytidylyltransferase, at 997,661 to 998,434
_RS04595
ABCV34_RS04600: ABCV34_RS04600 - DUF2971 domain-containing protein, at 998,975 to 999,850
_RS04600
Position (kb) 998
999
1000 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 998.055 kb on + strand, within ABCV34_RS04595 at 998.056 kb on - strand, within ABCV34_RS04595 at 998.059 kb on + strand, within ABCV34_RS04595 at 998.060 kb on - strand, within ABCV34_RS04595 at 998.084 kb on + strand, within ABCV34_RS04595 at 998.084 kb on + strand, within ABCV34_RS04595 at 998.084 kb on + strand, within ABCV34_RS04595 at 998.084 kb on + strand, within ABCV34_RS04595 at 998.084 kb on + strand, within ABCV34_RS04595 at 998.084 kb on + strand, within ABCV34_RS04595 at 998.084 kb on + strand, within ABCV34_RS04595 at 998.084 kb on + strand, within ABCV34_RS04595 at 998.084 kb on + strand, within ABCV34_RS04595 at 998.085 kb on - strand, within ABCV34_RS04595 at 998.085 kb on - strand, within ABCV34_RS04595 at 998.085 kb on - strand, within ABCV34_RS04595 at 998.085 kb on - strand, within ABCV34_RS04595 at 998.085 kb on - strand, within ABCV34_RS04595 at 998.085 kb on - strand, within ABCV34_RS04595 at 998.085 kb on - strand, within ABCV34_RS04595 at 998.085 kb on - strand, within ABCV34_RS04595 at 998.085 kb on - strand, within ABCV34_RS04595 at 998.085 kb on - strand, within ABCV34_RS04595 at 998.085 kb on - strand, within ABCV34_RS04595 at 998.086 kb on + strand, within ABCV34_RS04595 at 998.086 kb on + strand, within ABCV34_RS04595 at 998.086 kb on + strand, within ABCV34_RS04595 at 998.086 kb on + strand, within ABCV34_RS04595 at 998.086 kb on + strand, within ABCV34_RS04595 at 998.086 kb on + strand, within ABCV34_RS04595 at 998.086 kb on + strand, within ABCV34_RS04595 at 998.086 kb on + strand, within ABCV34_RS04595 at 998.086 kb on + strand, within ABCV34_RS04595 at 998.086 kb on + strand, within ABCV34_RS04595 at 998.086 kb on + strand, within ABCV34_RS04595 at 998.086 kb on + strand, within ABCV34_RS04595 at 998.087 kb on - strand, within ABCV34_RS04595 at 998.087 kb on - strand, within ABCV34_RS04595 at 998.087 kb on - strand, within ABCV34_RS04595 at 998.087 kb on - strand, within ABCV34_RS04595 at 998.087 kb on - strand, within ABCV34_RS04595 at 998.088 kb on + strand, within ABCV34_RS04595 at 998.088 kb on + strand, within ABCV34_RS04595 at 998.088 kb on + strand, within ABCV34_RS04595 at 998.088 kb on + strand, within ABCV34_RS04595 at 998.089 kb on - strand, within ABCV34_RS04595 at 998.089 kb on - strand, within ABCV34_RS04595 at 998.212 kb on + strand, within ABCV34_RS04595 at 998.212 kb on + strand, within ABCV34_RS04595 at 998.213 kb on - strand, within ABCV34_RS04595 at 998.213 kb on - strand, within ABCV34_RS04595 at 998.213 kb on - strand, within ABCV34_RS04595 at 998.213 kb on - strand, within ABCV34_RS04595 at 998.213 kb on - strand, within ABCV34_RS04595 at 998.213 kb on - strand, within ABCV34_RS04595 at 998.213 kb on - strand, within ABCV34_RS04595 at 998.213 kb on - strand, within ABCV34_RS04595 at 998.213 kb on - strand, within ABCV34_RS04595 at 998.235 kb on + strand, within ABCV34_RS04595 at 998.235 kb on + strand, within ABCV34_RS04595 at 998.235 kb on + strand, within ABCV34_RS04595 at 998.235 kb on + strand, within ABCV34_RS04595 at 998.235 kb on + strand, within ABCV34_RS04595 at 998.235 kb on + strand, within ABCV34_RS04595 at 998.235 kb on + strand, within ABCV34_RS04595 at 998.236 kb on - strand, within ABCV34_RS04595 at 998.236 kb on - strand, within ABCV34_RS04595 at 998.236 kb on - strand, within ABCV34_RS04595 at 998.236 kb on - strand, within ABCV34_RS04595 at 998.236 kb on - strand, within ABCV34_RS04595 at 998.247 kb on + strand, within ABCV34_RS04595 at 998.247 kb on + strand, within ABCV34_RS04595 at 998.247 kb on + strand, within ABCV34_RS04595 at 998.247 kb on + strand, within ABCV34_RS04595 at 998.247 kb on + strand, within ABCV34_RS04595 at 998.248 kb on - strand, within ABCV34_RS04595 at 998.248 kb on - strand, within ABCV34_RS04595 at 998.262 kb on + strand, within ABCV34_RS04595 at 998.262 kb on + strand, within ABCV34_RS04595 at 998.262 kb on + strand, within ABCV34_RS04595 at 998.262 kb on + strand, within ABCV34_RS04595 at 998.262 kb on + strand, within ABCV34_RS04595 at 998.262 kb on + strand, within ABCV34_RS04595 at 998.262 kb on + strand, within ABCV34_RS04595 at 998.262 kb on + strand, within ABCV34_RS04595 at 998.262 kb on + strand, within ABCV34_RS04595 at 998.262 kb on + strand, within ABCV34_RS04595 at 998.262 kb on + strand, within ABCV34_RS04595 at 998.262 kb on + strand, within ABCV34_RS04595 at 998.263 kb on - strand, within ABCV34_RS04595 at 998.263 kb on - strand, within ABCV34_RS04595 at 998.263 kb on - strand, within ABCV34_RS04595 at 998.263 kb on - strand, within ABCV34_RS04595 at 998.263 kb on - strand, within ABCV34_RS04595 at 998.263 kb on - strand, within ABCV34_RS04595 at 998.263 kb on - strand, within ABCV34_RS04595 at 998.263 kb on - strand, within ABCV34_RS04595 at 998.263 kb on - strand, within ABCV34_RS04595 at 998.271 kb on + strand, within ABCV34_RS04595 at 998.313 kb on + strand, within ABCV34_RS04595 at 998.313 kb on + strand, within ABCV34_RS04595 at 998.313 kb on + strand, within ABCV34_RS04595 at 998.313 kb on + strand, within ABCV34_RS04595 at 998.313 kb on + strand, within ABCV34_RS04595 at 998.313 kb on + strand, within ABCV34_RS04595 at 998.313 kb on + strand, within ABCV34_RS04595 at 998.314 kb on - strand, within ABCV34_RS04595 at 998.314 kb on - strand, within ABCV34_RS04595 at 998.448 kb on - strand at 998.448 kb on - strand at 998.459 kb on + strand at 998.459 kb on + strand at 998.459 kb on + strand at 998.459 kb on + strand at 998.459 kb on + strand at 998.459 kb on + strand at 998.459 kb on + strand at 998.459 kb on + strand at 998.459 kb on + strand at 998.460 kb on - strand at 998.460 kb on - strand at 998.460 kb on - strand at 998.460 kb on - strand at 998.518 kb on - strand at 998.518 kb on - strand at 998.518 kb on - strand at 998.525 kb on + strand at 998.525 kb on + strand at 998.526 kb on - strand at 998.526 kb on - strand at 998.526 kb on - strand at 998.526 kb on - strand at 998.527 kb on + strand at 998.527 kb on + strand at 998.597 kb on - strand at 998.649 kb on + strand at 998.649 kb on + strand at 998.649 kb on + strand at 998.650 kb on - strand at 998.650 kb on - strand at 998.650 kb on - strand at 998.758 kb on + strand at 998.759 kb on - strand at 998.759 kb on - strand at 998.759 kb on - strand at 998.759 kb on - strand at 998.759 kb on - strand at 998.789 kb on + strand at 998.869 kb on + strand at 998.881 kb on - strand at 998.976 kb on + strand at 998.977 kb on - strand at 998.989 kb on - strand at 998.989 kb on - strand at 998.989 kb on - strand at 999.434 kb on - strand, within ABCV34_RS04600 at 999.501 kb on - strand, within ABCV34_RS04600 at 999.516 kb on - strand, within ABCV34_RS04600 at 999.516 kb on - strand, within ABCV34_RS04600 at 999.540 kb on - strand, within ABCV34_RS04600 at 999.580 kb on - strand, within ABCV34_RS04600 at 999.659 kb on - strand, within ABCV34_RS04600 at 999.659 kb on - strand, within ABCV34_RS04600 at 999.659 kb on - strand, within ABCV34_RS04600 at 999.679 kb on - strand, within ABCV34_RS04600 at 999.679 kb on - strand, within ABCV34_RS04600 at 999.679 kb on - strand, within ABCV34_RS04600 at 999.679 kb on - strand, within ABCV34_RS04600 at 999.679 kb on - strand, within ABCV34_RS04600 at 999.726 kb on - strand, within ABCV34_RS04600 at 999.811 kb on + strand at 999.812 kb on - strand at 999.812 kb on - strand at 999.874 kb on + strand at 999.875 kb on - strand at 999.875 kb on - strand at 999.875 kb on - strand at 999.882 kb on + strand at 999.883 kb on - strand at 999.883 kb on - strand at 999.883 kb on - strand at 999.954 kb on + strand at 999.954 kb on + strand at 999.955 kb on - strand at 999.955 kb on - strand at 999.980 kb on - strand at 999.983 kb on - strand at 1000.016 kb on - strand at 1000.131 kb on - strand at 1000.131 kb on - strand at 1000.133 kb on - strand at 1000.189 kb on - strand at 1000.189 kb on - strand at 1000.268 kb on + strand at 1000.269 kb on - strand at 1000.275 kb on - strand at 1000.275 kb on - strand at 1000.280 kb on - strand at 1000.324 kb on + strand at 1000.325 kb on - strand at 1000.325 kb on - strand at 1000.365 kb on - strand at 1000.365 kb on - strand at 1000.381 kb on - strand at 1000.381 kb on - strand at 1000.381 kb on - strand at 1000.430 kb on - strand at 1000.449 kb on - strand at 1000.528 kb on + strand at 1000.529 kb on - strand at 1000.548 kb on - strand at 1000.551 kb on - strand at 1000.566 kb on - strand at 1000.566 kb on - strand at 1000.723 kb on + strand at 1000.724 kb on - strand at 1000.726 kb on - strand at 1000.732 kb on - strand at 1000.732 kb on - strand at 1000.732 kb on - strand at 1000.732 kb on - strand at 1000.750 kb on - strand at 1000.804 kb on - strand at 1000.804 kb on - strand at 1000.804 kb on - strand at 1000.835 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=FW300; TreatmentDuration=2hrs; Outgrowth=R2A_Kan10_Lactate remove 998,055 + ABCV34_RS04595 0.51 -1.1 998,056 - ABCV34_RS04595 0.51 -2.2 998,059 + ABCV34_RS04595 0.51 -2.0 998,060 - ABCV34_RS04595 0.52 -0.6 998,084 + ABCV34_RS04595 0.55 +0.8 998,084 + ABCV34_RS04595 0.55 -2.8 998,084 + ABCV34_RS04595 0.55 -1.1 998,084 + ABCV34_RS04595 0.55 -2.3 998,084 + ABCV34_RS04595 0.55 -0.4 998,084 + ABCV34_RS04595 0.55 -2.8 998,084 + ABCV34_RS04595 0.55 -0.6 998,084 + ABCV34_RS04595 0.55 +0.3 998,084 + ABCV34_RS04595 0.55 -1.0 998,085 - ABCV34_RS04595 0.55 -1.0 998,085 - ABCV34_RS04595 0.55 -0.4 998,085 - ABCV34_RS04595 0.55 -3.0 998,085 - ABCV34_RS04595 0.55 -0.4 998,085 - ABCV34_RS04595 0.55 -1.0 998,085 - ABCV34_RS04595 0.55 -0.9 998,085 - ABCV34_RS04595 0.55 -2.0 998,085 - ABCV34_RS04595 0.55 -0.9 998,085 - ABCV34_RS04595 0.55 -1.4 998,085 - ABCV34_RS04595 0.55 -0.4 998,085 - ABCV34_RS04595 0.55 -0.7 998,086 + ABCV34_RS04595 0.55 -1.4 998,086 + ABCV34_RS04595 0.55 +0.0 998,086 + ABCV34_RS04595 0.55 -1.2 998,086 + ABCV34_RS04595 0.55 +2.0 998,086 + ABCV34_RS04595 0.55 -1.3 998,086 + ABCV34_RS04595 0.55 +3.0 998,086 + ABCV34_RS04595 0.55 -1.8 998,086 + ABCV34_RS04595 0.55 +1.1 998,086 + ABCV34_RS04595 0.55 +0.4 998,086 + ABCV34_RS04595 0.55 -1.0 998,086 + ABCV34_RS04595 0.55 -0.1 998,086 + ABCV34_RS04595 0.55 -1.3 998,087 - ABCV34_RS04595 0.55 -1.0 998,087 - ABCV34_RS04595 0.55 -0.0 998,087 - ABCV34_RS04595 0.55 -0.1 998,087 - ABCV34_RS04595 0.55 -1.3 998,087 - ABCV34_RS04595 0.55 -1.9 998,088 + ABCV34_RS04595 0.55 -0.0 998,088 + ABCV34_RS04595 0.55 -2.0 998,088 + ABCV34_RS04595 0.55 -1.7 998,088 + ABCV34_RS04595 0.55 -0.7 998,089 - ABCV34_RS04595 0.55 -0.1 998,089 - ABCV34_RS04595 0.55 +1.7 998,212 + ABCV34_RS04595 0.71 -1.3 998,212 + ABCV34_RS04595 0.71 -0.7 998,213 - ABCV34_RS04595 0.71 -1.3 998,213 - ABCV34_RS04595 0.71 -1.2 998,213 - ABCV34_RS04595 0.71 +0.6 998,213 - ABCV34_RS04595 0.71 -0.6 998,213 - ABCV34_RS04595 0.71 -1.2 998,213 - ABCV34_RS04595 0.71 -0.5 998,213 - ABCV34_RS04595 0.71 +0.4 998,213 - ABCV34_RS04595 0.71 -1.3 998,213 - ABCV34_RS04595 0.71 -1.0 998,235 + ABCV34_RS04595 0.74 +0.4 998,235 + ABCV34_RS04595 0.74 -2.2 998,235 + ABCV34_RS04595 0.74 +1.1 998,235 + ABCV34_RS04595 0.74 -2.8 998,235 + ABCV34_RS04595 0.74 +1.1 998,235 + ABCV34_RS04595 0.74 -2.4 998,235 + ABCV34_RS04595 0.74 -2.2 998,236 - ABCV34_RS04595 0.74 -1.3 998,236 - ABCV34_RS04595 0.74 -0.9 998,236 - ABCV34_RS04595 0.74 +1.0 998,236 - ABCV34_RS04595 0.74 -1.8 998,236 - ABCV34_RS04595 0.74 -1.1 998,247 + ABCV34_RS04595 0.76 -1.2 998,247 + ABCV34_RS04595 0.76 -1.0 998,247 + ABCV34_RS04595 0.76 -1.3 998,247 + ABCV34_RS04595 0.76 -0.3 998,247 + ABCV34_RS04595 0.76 -0.3 998,248 - ABCV34_RS04595 0.76 +0.3 998,248 - ABCV34_RS04595 0.76 -0.2 998,262 + ABCV34_RS04595 0.78 -1.3 998,262 + ABCV34_RS04595 0.78 -1.0 998,262 + ABCV34_RS04595 0.78 -0.6 998,262 + ABCV34_RS04595 0.78 -2.2 998,262 + ABCV34_RS04595 0.78 -0.5 998,262 + ABCV34_RS04595 0.78 -1.3 998,262 + ABCV34_RS04595 0.78 -2.4 998,262 + ABCV34_RS04595 0.78 +0.7 998,262 + ABCV34_RS04595 0.78 +0.1 998,262 + ABCV34_RS04595 0.78 +0.4 998,262 + ABCV34_RS04595 0.78 -2.4 998,262 + ABCV34_RS04595 0.78 -1.4 998,263 - ABCV34_RS04595 0.78 -0.9 998,263 - ABCV34_RS04595 0.78 -1.0 998,263 - ABCV34_RS04595 0.78 +0.1 998,263 - ABCV34_RS04595 0.78 -2.2 998,263 - ABCV34_RS04595 0.78 -1.1 998,263 - ABCV34_RS04595 0.78 -1.1 998,263 - ABCV34_RS04595 0.78 -0.1 998,263 - ABCV34_RS04595 0.78 -0.4 998,263 - ABCV34_RS04595 0.78 +0.1 998,271 + ABCV34_RS04595 0.79 -0.7 998,313 + ABCV34_RS04595 0.84 -2.7 998,313 + ABCV34_RS04595 0.84 -0.8 998,313 + ABCV34_RS04595 0.84 +0.3 998,313 + ABCV34_RS04595 0.84 -0.7 998,313 + ABCV34_RS04595 0.84 -1.0 998,313 + ABCV34_RS04595 0.84 -0.3 998,313 + ABCV34_RS04595 0.84 -0.8 998,314 - ABCV34_RS04595 0.84 -0.1 998,314 - ABCV34_RS04595 0.84 -0.9 998,448 - +0.8 998,448 - +1.0 998,459 + -1.2 998,459 + -0.8 998,459 + -1.3 998,459 + +2.0 998,459 + -1.4 998,459 + -0.4 998,459 + -0.3 998,459 + -1.3 998,459 + -0.3 998,460 - -1.0 998,460 - -1.6 998,460 - -2.1 998,460 - -2.8 998,518 - -1.6 998,518 - -0.6 998,518 - +0.2 998,525 + +0.1 998,525 + +0.7 998,526 - -1.1 998,526 - -2.7 998,526 - -0.4 998,526 - -1.3 998,527 + -1.3 998,527 + -1.1 998,597 - -1.9 998,649 + -1.2 998,649 + +1.0 998,649 + -1.3 998,650 - -1.4 998,650 - -0.9 998,650 - +2.4 998,758 + +0.4 998,759 - -0.4 998,759 - +0.4 998,759 - -0.8 998,759 - -1.2 998,759 - +0.8 998,789 + -0.3 998,869 + +0.4 998,881 - -2.2 998,976 + -1.6 998,977 - -0.2 998,989 - +0.5 998,989 - -3.8 998,989 - -1.1 999,434 - ABCV34_RS04600 0.52 +0.6 999,501 - ABCV34_RS04600 0.60 +1.2 999,516 - ABCV34_RS04600 0.62 -3.0 999,516 - ABCV34_RS04600 0.62 -0.3 999,540 - ABCV34_RS04600 0.64 -2.0 999,580 - ABCV34_RS04600 0.69 -0.8 999,659 - ABCV34_RS04600 0.78 +0.0 999,659 - ABCV34_RS04600 0.78 -1.3 999,659 - ABCV34_RS04600 0.78 -2.6 999,679 - ABCV34_RS04600 0.80 -1.2 999,679 - ABCV34_RS04600 0.80 -2.2 999,679 - ABCV34_RS04600 0.80 -0.6 999,679 - ABCV34_RS04600 0.80 -0.4 999,679 - ABCV34_RS04600 0.80 -0.6 999,726 - ABCV34_RS04600 0.86 -0.3 999,811 + -1.2 999,812 - -0.7 999,812 - +0.6 999,874 + +0.6 999,875 - +0.1 999,875 - +0.6 999,875 - -1.3 999,882 + -2.2 999,883 - -1.7 999,883 - -1.2 999,883 - -0.3 999,954 + -1.6 999,954 + -2.1 999,955 - -1.9 999,955 - -2.2 999,980 - -0.1 999,983 - +0.2 1,000,016 - -0.8 1,000,131 - -1.2 1,000,131 - +0.0 1,000,133 - -0.7 1,000,189 - -1.4 1,000,189 - +0.7 1,000,268 + +0.6 1,000,269 - -1.4 1,000,275 - -1.3 1,000,275 - -0.2 1,000,280 - -2.4 1,000,324 + -1.2 1,000,325 - +0.1 1,000,325 - +1.0 1,000,365 - -1.2 1,000,365 - -1.0 1,000,381 - +0.8 1,000,381 - -1.2 1,000,381 - +0.4 1,000,430 - -0.6 1,000,449 - +0.2 1,000,528 + -2.1 1,000,529 - -0.0 1,000,548 - -2.2 1,000,551 - -0.6 1,000,566 - +0.4 1,000,566 - -5.2 1,000,723 + -1.8 1,000,724 - +0.3 1,000,726 - +0.1 1,000,732 - -1.9 1,000,732 - +0.3 1,000,732 - +0.2 1,000,732 - -1.6 1,000,750 - +1.3 1,000,804 - -1.2 1,000,804 - -0.8 1,000,804 - -2.2 1,000,835 - -1.5
Or see this region's nucleotide sequence