Strain Fitness in Castellaniella sp019104865 MT123 around ABCV34_RS02545

Experiment: Survival; Treatment=FW300; TreatmentDuration=2hrs; Outgrowth=R2A_Kan10_Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABCV34_RS02535 and ABCV34_RS02540 overlap by 4 nucleotidesABCV34_RS02540 and ABCV34_RS02545 overlap by 1 nucleotidesABCV34_RS02545 and ABCV34_RS02550 are separated by 20 nucleotides ABCV34_RS02535: ABCV34_RS02535 - ribosome silencing factor, at 564,383 to 564,778 _RS02535 ABCV34_RS02540: ABCV34_RS02540 - nicotinate (nicotinamide) nucleotide adenylyltransferase, at 564,775 to 565,392 _RS02540 ABCV34_RS02545: ABCV34_RS02545 - oxygen-dependent coproporphyrinogen oxidase, at 565,392 to 566,294 _RS02545 ABCV34_RS02550: ABCV34_RS02550 - phosphoribosylamine--glycine ligase, at 566,315 to 567,613 _RS02550 Position (kb) 565 566 567Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 564.486 kb on + strand, within ABCV34_RS02535at 564.486 kb on + strand, within ABCV34_RS02535at 564.486 kb on + strand, within ABCV34_RS02535at 564.486 kb on + strand, within ABCV34_RS02535at 564.486 kb on + strand, within ABCV34_RS02535at 564.486 kb on + strand, within ABCV34_RS02535at 564.486 kb on + strand, within ABCV34_RS02535at 564.487 kb on - strand, within ABCV34_RS02535at 564.487 kb on - strand, within ABCV34_RS02535at 564.487 kb on - strand, within ABCV34_RS02535at 564.487 kb on - strand, within ABCV34_RS02535at 564.487 kb on - strand, within ABCV34_RS02535at 564.487 kb on - strand, within ABCV34_RS02535at 564.487 kb on - strand, within ABCV34_RS02535at 564.487 kb on - strand, within ABCV34_RS02535at 564.487 kb on - strand, within ABCV34_RS02535at 564.487 kb on - strand, within ABCV34_RS02535at 564.487 kb on - strand, within ABCV34_RS02535at 564.487 kb on - strand, within ABCV34_RS02535at 564.489 kb on + strand, within ABCV34_RS02535at 564.489 kb on + strand, within ABCV34_RS02535at 564.489 kb on + strand, within ABCV34_RS02535at 564.489 kb on + strand, within ABCV34_RS02535at 564.489 kb on + strand, within ABCV34_RS02535at 564.490 kb on - strand, within ABCV34_RS02535at 564.490 kb on - strand, within ABCV34_RS02535at 564.490 kb on - strand, within ABCV34_RS02535at 564.490 kb on - strand, within ABCV34_RS02535at 564.490 kb on - strand, within ABCV34_RS02535at 564.490 kb on - strand, within ABCV34_RS02535at 564.490 kb on - strand, within ABCV34_RS02535at 565.417 kb on + strandat 565.417 kb on + strandat 565.417 kb on + strandat 565.466 kb on - strandat 565.495 kb on - strand, within ABCV34_RS02545at 565.552 kb on + strand, within ABCV34_RS02545at 565.552 kb on + strand, within ABCV34_RS02545at 565.553 kb on - strand, within ABCV34_RS02545at 565.553 kb on - strand, within ABCV34_RS02545at 565.553 kb on - strand, within ABCV34_RS02545at 565.553 kb on - strand, within ABCV34_RS02545at 565.573 kb on + strand, within ABCV34_RS02545at 565.573 kb on + strand, within ABCV34_RS02545at 565.573 kb on + strand, within ABCV34_RS02545at 565.574 kb on - strand, within ABCV34_RS02545at 565.588 kb on + strand, within ABCV34_RS02545at 565.655 kb on - strand, within ABCV34_RS02545at 565.655 kb on - strand, within ABCV34_RS02545at 565.655 kb on - strand, within ABCV34_RS02545at 565.655 kb on - strand, within ABCV34_RS02545at 565.655 kb on - strand, within ABCV34_RS02545at 565.655 kb on - strand, within ABCV34_RS02545at 565.784 kb on - strand, within ABCV34_RS02545at 565.784 kb on - strand, within ABCV34_RS02545at 565.892 kb on - strand, within ABCV34_RS02545at 565.968 kb on + strand, within ABCV34_RS02545at 565.968 kb on + strand, within ABCV34_RS02545at 565.968 kb on + strand, within ABCV34_RS02545at 565.968 kb on + strand, within ABCV34_RS02545at 565.969 kb on - strand, within ABCV34_RS02545at 565.969 kb on - strand, within ABCV34_RS02545at 565.969 kb on - strand, within ABCV34_RS02545at 565.969 kb on - strand, within ABCV34_RS02545at 565.969 kb on - strand, within ABCV34_RS02545at 566.317 kb on - strandat 566.317 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Survival; Treatment=FW300; TreatmentDuration=2hrs; Outgrowth=R2A_Kan10_Lactate
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564,486 + ABCV34_RS02535 0.26 -0.6
564,486 + ABCV34_RS02535 0.26 +1.0
564,486 + ABCV34_RS02535 0.26 +2.3
564,486 + ABCV34_RS02535 0.26 -0.5
564,486 + ABCV34_RS02535 0.26 -1.2
564,486 + ABCV34_RS02535 0.26 +1.0
564,486 + ABCV34_RS02535 0.26 -0.3
564,487 - ABCV34_RS02535 0.26 +0.6
564,487 - ABCV34_RS02535 0.26 -2.5
564,487 - ABCV34_RS02535 0.26 -0.3
564,487 - ABCV34_RS02535 0.26 -2.6
564,487 - ABCV34_RS02535 0.26 -0.8
564,487 - ABCV34_RS02535 0.26 -1.3
564,487 - ABCV34_RS02535 0.26 -0.1
564,487 - ABCV34_RS02535 0.26 -0.2
564,487 - ABCV34_RS02535 0.26 -1.5
564,487 - ABCV34_RS02535 0.26 -1.4
564,487 - ABCV34_RS02535 0.26 -0.3
564,487 - ABCV34_RS02535 0.26 -1.6
564,489 + ABCV34_RS02535 0.27 -0.9
564,489 + ABCV34_RS02535 0.27 -0.6
564,489 + ABCV34_RS02535 0.27 -1.3
564,489 + ABCV34_RS02535 0.27 -2.2
564,489 + ABCV34_RS02535 0.27 +0.7
564,490 - ABCV34_RS02535 0.27 -0.6
564,490 - ABCV34_RS02535 0.27 -1.0
564,490 - ABCV34_RS02535 0.27 -1.2
564,490 - ABCV34_RS02535 0.27 -0.8
564,490 - ABCV34_RS02535 0.27 -0.7
564,490 - ABCV34_RS02535 0.27 +0.4
564,490 - ABCV34_RS02535 0.27 -2.1
565,417 + +1.7
565,417 + +0.5
565,417 + -4.1
565,466 - -0.4
565,495 - ABCV34_RS02545 0.11 -2.8
565,552 + ABCV34_RS02545 0.18 -1.7
565,552 + ABCV34_RS02545 0.18 -0.7
565,553 - ABCV34_RS02545 0.18 -1.3
565,553 - ABCV34_RS02545 0.18 +0.4
565,553 - ABCV34_RS02545 0.18 +1.0
565,553 - ABCV34_RS02545 0.18 +0.4
565,573 + ABCV34_RS02545 0.20 -0.3
565,573 + ABCV34_RS02545 0.20 -1.1
565,573 + ABCV34_RS02545 0.20 -1.4
565,574 - ABCV34_RS02545 0.20 -2.2
565,588 + ABCV34_RS02545 0.22 -0.4
565,655 - ABCV34_RS02545 0.29 -2.3
565,655 - ABCV34_RS02545 0.29 +0.0
565,655 - ABCV34_RS02545 0.29 +1.0
565,655 - ABCV34_RS02545 0.29 -1.6
565,655 - ABCV34_RS02545 0.29 -1.1
565,655 - ABCV34_RS02545 0.29 -0.8
565,784 - ABCV34_RS02545 0.43 -1.4
565,784 - ABCV34_RS02545 0.43 +0.0
565,892 - ABCV34_RS02545 0.55 -0.6
565,968 + ABCV34_RS02545 0.64 -1.3
565,968 + ABCV34_RS02545 0.64 +0.7
565,968 + ABCV34_RS02545 0.64 -2.4
565,968 + ABCV34_RS02545 0.64 -1.4
565,969 - ABCV34_RS02545 0.64 -0.6
565,969 - ABCV34_RS02545 0.64 -1.4
565,969 - ABCV34_RS02545 0.64 -0.6
565,969 - ABCV34_RS02545 0.64 -0.4
565,969 - ABCV34_RS02545 0.64 -1.8
566,317 - -0.6
566,317 - +3.0

Or see this region's nucleotide sequence