Experiment: Survival; Treatment=FW300; TreatmentDuration=2hrs; Outgrowth=R2A_Kan10_Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABCV34_RS00815 and ABCV34_RS00820 are separated by 175 nucleotides ABCV34_RS00820 and ABCV34_RS00825 overlap by 4 nucleotides ABCV34_RS00825 and ABCV34_RS00830 are separated by 180 nucleotides
ABCV34_RS00815: ABCV34_RS00815 - TadE/TadG family type IV pilus assembly protein, at 175,464 to 176,462
_RS00815
ABCV34_RS00820: ABCV34_RS00820 - Hsp33 family molecular chaperone HslO, at 176,638 to 177,573
_RS00820
ABCV34_RS00825: ABCV34_RS00825 - RDD family protein, at 177,570 to 178,103
_RS00825
ABCV34_RS00830: ABCV34_RS00830 - hypothetical protein, at 178,284 to 178,472
_RS00830
Position (kb) 176
177
178 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 175.702 kb on + strand, within ABCV34_RS00815 at 175.702 kb on + strand, within ABCV34_RS00815 at 175.702 kb on + strand, within ABCV34_RS00815 at 175.702 kb on + strand, within ABCV34_RS00815 at 175.702 kb on + strand, within ABCV34_RS00815 at 175.702 kb on + strand, within ABCV34_RS00815 at 175.702 kb on + strand, within ABCV34_RS00815 at 175.703 kb on - strand, within ABCV34_RS00815 at 175.703 kb on - strand, within ABCV34_RS00815 at 175.703 kb on - strand, within ABCV34_RS00815 at 175.703 kb on - strand, within ABCV34_RS00815 at 175.703 kb on - strand, within ABCV34_RS00815 at 175.703 kb on - strand, within ABCV34_RS00815 at 175.703 kb on - strand, within ABCV34_RS00815 at 175.703 kb on - strand, within ABCV34_RS00815 at 175.760 kb on + strand, within ABCV34_RS00815 at 175.786 kb on + strand, within ABCV34_RS00815 at 175.827 kb on + strand, within ABCV34_RS00815 at 175.997 kb on - strand, within ABCV34_RS00815 at 176.493 kb on + strand at 176.493 kb on + strand at 176.493 kb on + strand at 176.530 kb on + strand at 176.530 kb on + strand at 176.530 kb on + strand at 176.530 kb on + strand at 176.530 kb on + strand at 176.530 kb on + strand at 176.531 kb on - strand at 176.531 kb on - strand at 176.531 kb on - strand at 176.531 kb on - strand at 176.531 kb on - strand at 176.535 kb on + strand at 176.536 kb on - strand at 176.589 kb on + strand at 176.622 kb on - strand at 176.723 kb on + strand at 176.723 kb on + strand at 176.724 kb on - strand at 176.847 kb on - strand, within ABCV34_RS00820 at 177.122 kb on + strand, within ABCV34_RS00820 at 177.122 kb on + strand, within ABCV34_RS00820 at 177.122 kb on + strand, within ABCV34_RS00820 at 177.122 kb on + strand, within ABCV34_RS00820 at 177.122 kb on + strand, within ABCV34_RS00820 at 177.122 kb on + strand, within ABCV34_RS00820 at 177.122 kb on + strand, within ABCV34_RS00820 at 177.122 kb on + strand, within ABCV34_RS00820 at 177.122 kb on + strand, within ABCV34_RS00820 at 177.122 kb on + strand, within ABCV34_RS00820 at 177.122 kb on + strand, within ABCV34_RS00820 at 177.122 kb on + strand, within ABCV34_RS00820 at 177.123 kb on - strand, within ABCV34_RS00820 at 177.123 kb on - strand, within ABCV34_RS00820 at 177.123 kb on - strand, within ABCV34_RS00820 at 177.123 kb on - strand, within ABCV34_RS00820 at 177.123 kb on - strand, within ABCV34_RS00820 at 177.123 kb on - strand, within ABCV34_RS00820 at 177.123 kb on - strand, within ABCV34_RS00820 at 177.123 kb on - strand, within ABCV34_RS00820 at 177.123 kb on - strand, within ABCV34_RS00820 at 177.123 kb on - strand, within ABCV34_RS00820 at 177.123 kb on - strand, within ABCV34_RS00820 at 177.123 kb on - strand, within ABCV34_RS00820 at 177.123 kb on - strand, within ABCV34_RS00820 at 177.123 kb on - strand, within ABCV34_RS00820 at 177.781 kb on + strand, within ABCV34_RS00825 at 177.781 kb on + strand, within ABCV34_RS00825 at 177.895 kb on + strand, within ABCV34_RS00825 at 177.896 kb on - strand, within ABCV34_RS00825 at 177.896 kb on - strand, within ABCV34_RS00825 at 177.896 kb on - strand, within ABCV34_RS00825 at 177.982 kb on + strand, within ABCV34_RS00825 at 177.996 kb on + strand, within ABCV34_RS00825 at 178.024 kb on + strand, within ABCV34_RS00825 at 178.024 kb on + strand, within ABCV34_RS00825 at 178.024 kb on + strand, within ABCV34_RS00825 at 178.024 kb on + strand, within ABCV34_RS00825 at 178.024 kb on + strand, within ABCV34_RS00825 at 178.024 kb on + strand, within ABCV34_RS00825 at 178.024 kb on + strand, within ABCV34_RS00825 at 178.025 kb on - strand, within ABCV34_RS00825 at 178.025 kb on - strand, within ABCV34_RS00825 at 178.025 kb on - strand, within ABCV34_RS00825 at 178.025 kb on - strand, within ABCV34_RS00825 at 178.025 kb on - strand, within ABCV34_RS00825 at 178.025 kb on - strand, within ABCV34_RS00825 at 178.025 kb on - strand, within ABCV34_RS00825 at 178.025 kb on - strand, within ABCV34_RS00825 at 178.025 kb on - strand, within ABCV34_RS00825 at 178.025 kb on - strand, within ABCV34_RS00825 at 178.025 kb on - strand, within ABCV34_RS00825 at 178.025 kb on - strand, within ABCV34_RS00825 at 178.025 kb on - strand, within ABCV34_RS00825 at 178.025 kb on - strand, within ABCV34_RS00825 at 178.025 kb on - strand, within ABCV34_RS00825 at 178.025 kb on - strand, within ABCV34_RS00825 at 178.025 kb on - strand, within ABCV34_RS00825 at 178.025 kb on - strand, within ABCV34_RS00825 at 178.153 kb on + strand at 178.153 kb on + strand at 178.153 kb on + strand at 178.153 kb on + strand at 178.153 kb on + strand at 178.153 kb on + strand at 178.154 kb on - strand at 178.154 kb on - strand at 178.223 kb on + strand at 178.223 kb on + strand at 178.223 kb on + strand at 178.223 kb on + strand at 178.224 kb on - strand at 178.224 kb on - strand at 178.224 kb on - strand at 178.224 kb on - strand at 178.224 kb on - strand at 178.224 kb on - strand at 178.224 kb on - strand at 178.224 kb on - strand at 178.224 kb on - strand at 178.224 kb on - strand at 178.224 kb on - strand at 178.384 kb on + strand, within ABCV34_RS00830 at 178.385 kb on - strand, within ABCV34_RS00830 at 178.385 kb on - strand, within ABCV34_RS00830 at 178.385 kb on - strand, within ABCV34_RS00830 at 178.519 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=FW300; TreatmentDuration=2hrs; Outgrowth=R2A_Kan10_Lactate remove 175,702 + ABCV34_RS00815 0.24 +1.2 175,702 + ABCV34_RS00815 0.24 -0.7 175,702 + ABCV34_RS00815 0.24 -1.3 175,702 + ABCV34_RS00815 0.24 -1.0 175,702 + ABCV34_RS00815 0.24 -1.4 175,702 + ABCV34_RS00815 0.24 +0.0 175,702 + ABCV34_RS00815 0.24 -0.6 175,703 - ABCV34_RS00815 0.24 -0.9 175,703 - ABCV34_RS00815 0.24 -1.1 175,703 - ABCV34_RS00815 0.24 -0.9 175,703 - ABCV34_RS00815 0.24 -2.9 175,703 - ABCV34_RS00815 0.24 +1.6 175,703 - ABCV34_RS00815 0.24 -1.0 175,703 - ABCV34_RS00815 0.24 +0.6 175,703 - ABCV34_RS00815 0.24 +0.6 175,760 + ABCV34_RS00815 0.30 +0.6 175,786 + ABCV34_RS00815 0.32 +0.0 175,827 + ABCV34_RS00815 0.36 -0.0 175,997 - ABCV34_RS00815 0.53 -2.5 176,493 + +0.3 176,493 + -0.8 176,493 + -0.9 176,530 + -1.5 176,530 + -0.9 176,530 + -1.7 176,530 + -0.6 176,530 + +0.2 176,530 + -0.8 176,531 - -0.9 176,531 - -0.1 176,531 - -0.7 176,531 - -0.3 176,531 - -0.5 176,535 + -0.2 176,536 - -1.1 176,589 + -0.5 176,622 - -1.6 176,723 + +0.3 176,723 + -1.0 176,724 - -3.4 176,847 - ABCV34_RS00820 0.22 -2.5 177,122 + ABCV34_RS00820 0.52 -0.3 177,122 + ABCV34_RS00820 0.52 -1.3 177,122 + ABCV34_RS00820 0.52 -1.3 177,122 + ABCV34_RS00820 0.52 +0.9 177,122 + ABCV34_RS00820 0.52 -1.6 177,122 + ABCV34_RS00820 0.52 -2.3 177,122 + ABCV34_RS00820 0.52 -1.2 177,122 + ABCV34_RS00820 0.52 -0.9 177,122 + ABCV34_RS00820 0.52 -0.0 177,122 + ABCV34_RS00820 0.52 -1.8 177,122 + ABCV34_RS00820 0.52 -1.4 177,122 + ABCV34_RS00820 0.52 -0.9 177,123 - ABCV34_RS00820 0.52 -0.8 177,123 - ABCV34_RS00820 0.52 -0.8 177,123 - ABCV34_RS00820 0.52 -0.1 177,123 - ABCV34_RS00820 0.52 -1.7 177,123 - ABCV34_RS00820 0.52 -1.9 177,123 - ABCV34_RS00820 0.52 -1.1 177,123 - ABCV34_RS00820 0.52 -1.4 177,123 - ABCV34_RS00820 0.52 -1.8 177,123 - ABCV34_RS00820 0.52 +0.1 177,123 - ABCV34_RS00820 0.52 -0.0 177,123 - ABCV34_RS00820 0.52 -1.5 177,123 - ABCV34_RS00820 0.52 -2.0 177,123 - ABCV34_RS00820 0.52 -3.0 177,123 - ABCV34_RS00820 0.52 -1.3 177,781 + ABCV34_RS00825 0.40 -0.1 177,781 + ABCV34_RS00825 0.40 -0.4 177,895 + ABCV34_RS00825 0.61 -2.1 177,896 - ABCV34_RS00825 0.61 -1.8 177,896 - ABCV34_RS00825 0.61 -2.6 177,896 - ABCV34_RS00825 0.61 +0.2 177,982 + ABCV34_RS00825 0.77 +1.2 177,996 + ABCV34_RS00825 0.80 -0.6 178,024 + ABCV34_RS00825 0.85 -1.4 178,024 + ABCV34_RS00825 0.85 -1.6 178,024 + ABCV34_RS00825 0.85 -1.6 178,024 + ABCV34_RS00825 0.85 -1.6 178,024 + ABCV34_RS00825 0.85 -2.0 178,024 + ABCV34_RS00825 0.85 -1.4 178,024 + ABCV34_RS00825 0.85 -0.3 178,025 - ABCV34_RS00825 0.85 -2.2 178,025 - ABCV34_RS00825 0.85 -0.8 178,025 - ABCV34_RS00825 0.85 +0.3 178,025 - ABCV34_RS00825 0.85 -1.7 178,025 - ABCV34_RS00825 0.85 -0.6 178,025 - ABCV34_RS00825 0.85 -1.4 178,025 - ABCV34_RS00825 0.85 +2.0 178,025 - ABCV34_RS00825 0.85 +1.2 178,025 - ABCV34_RS00825 0.85 -1.0 178,025 - ABCV34_RS00825 0.85 -1.9 178,025 - ABCV34_RS00825 0.85 -1.6 178,025 - ABCV34_RS00825 0.85 -0.6 178,025 - ABCV34_RS00825 0.85 -1.6 178,025 - ABCV34_RS00825 0.85 +0.8 178,025 - ABCV34_RS00825 0.85 -1.6 178,025 - ABCV34_RS00825 0.85 -0.7 178,025 - ABCV34_RS00825 0.85 -0.5 178,025 - ABCV34_RS00825 0.85 -1.5 178,153 + +1.0 178,153 + -1.4 178,153 + -0.4 178,153 + -2.8 178,153 + +0.1 178,153 + +1.4 178,154 - -3.1 178,154 - +0.0 178,223 + -0.6 178,223 + +0.0 178,223 + -0.6 178,223 + -0.2 178,224 - +0.5 178,224 - -1.5 178,224 - -0.4 178,224 - -1.5 178,224 - -0.8 178,224 - -0.5 178,224 - -0.6 178,224 - -1.9 178,224 - -0.0 178,224 - +0.2 178,224 - -0.7 178,384 + ABCV34_RS00830 0.53 -1.4 178,385 - ABCV34_RS00830 0.53 -0.0 178,385 - ABCV34_RS00830 0.53 -1.0 178,385 - ABCV34_RS00830 0.53 -0.1 178,519 - -0.0
Or see this region's nucleotide sequence