Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_273

Experiment: nitrate (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_272 and PfGW456L13_273 overlap by 21 nucleotidesPfGW456L13_273 and PfGW456L13_274 are separated by 13 nucleotides PfGW456L13_272 - Glutamate synthase [NADPH] large chain (EC 1.4.1.13), at 316,406 to 320,851 _272 PfGW456L13_273 - hypothetical protein, at 320,831 to 321,187 _273 PfGW456L13_274 - DamX, an inner membrane protein involved in bile resistance, at 321,201 to 322,802 _274 Position (kb) 320 321 322Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 319.872 kb on + strand, within PfGW456L13_272at 319.872 kb on + strand, within PfGW456L13_272at 319.872 kb on + strand, within PfGW456L13_272at 319.872 kb on + strand, within PfGW456L13_272at 319.873 kb on - strand, within PfGW456L13_272at 319.873 kb on - strand, within PfGW456L13_272at 319.878 kb on + strand, within PfGW456L13_272at 319.878 kb on + strand, within PfGW456L13_272at 319.878 kb on + strand, within PfGW456L13_272at 319.878 kb on + strand, within PfGW456L13_272at 319.879 kb on - strand, within PfGW456L13_272at 319.879 kb on - strand, within PfGW456L13_272at 319.879 kb on - strand, within PfGW456L13_272at 319.879 kb on - strand, within PfGW456L13_272at 320.116 kb on + strand, within PfGW456L13_272at 320.116 kb on + strand, within PfGW456L13_272at 320.116 kb on + strand, within PfGW456L13_272at 320.117 kb on - strand, within PfGW456L13_272at 320.117 kb on - strand, within PfGW456L13_272at 320.117 kb on - strand, within PfGW456L13_272at 320.247 kb on + strand, within PfGW456L13_272at 320.248 kb on - strand, within PfGW456L13_272at 320.287 kb on - strand, within PfGW456L13_272at 320.319 kb on + strand, within PfGW456L13_272at 320.319 kb on + strand, within PfGW456L13_272at 320.319 kb on + strand, within PfGW456L13_272at 320.319 kb on + strand, within PfGW456L13_272at 320.319 kb on + strand, within PfGW456L13_272at 320.319 kb on + strand, within PfGW456L13_272at 320.319 kb on + strand, within PfGW456L13_272at 320.319 kb on + strand, within PfGW456L13_272at 320.319 kb on + strand, within PfGW456L13_272at 320.320 kb on - strand, within PfGW456L13_272at 320.320 kb on - strand, within PfGW456L13_272at 320.320 kb on - strand, within PfGW456L13_272at 320.320 kb on - strand, within PfGW456L13_272at 320.320 kb on - strand, within PfGW456L13_272at 320.320 kb on - strand, within PfGW456L13_272at 320.320 kb on - strand, within PfGW456L13_272at 320.320 kb on - strand, within PfGW456L13_272at 320.320 kb on - strand, within PfGW456L13_272at 320.320 kb on - strand, within PfGW456L13_272at 320.598 kb on + strandat 320.598 kb on + strandat 320.598 kb on + strandat 320.599 kb on - strandat 320.599 kb on - strandat 320.599 kb on - strandat 320.708 kb on - strandat 320.764 kb on + strandat 320.765 kb on - strandat 320.786 kb on - strandat 320.786 kb on - strandat 320.812 kb on + strandat 320.812 kb on + strandat 320.812 kb on + strandat 320.813 kb on - strandat 320.813 kb on - strandat 320.813 kb on - strandat 320.813 kb on - strandat 320.813 kb on - strandat 320.836 kb on - strandat 320.929 kb on - strand, within PfGW456L13_273at 320.964 kb on + strand, within PfGW456L13_273at 320.964 kb on + strand, within PfGW456L13_273at 320.964 kb on + strand, within PfGW456L13_273at 320.964 kb on + strand, within PfGW456L13_273at 320.964 kb on + strand, within PfGW456L13_273at 320.965 kb on - strand, within PfGW456L13_273at 320.965 kb on - strand, within PfGW456L13_273at 320.965 kb on - strand, within PfGW456L13_273at 320.965 kb on - strand, within PfGW456L13_273at 321.097 kb on + strand, within PfGW456L13_273at 321.097 kb on + strandat 321.097 kb on + strand, within PfGW456L13_273at 321.257 kb on + strandat 321.258 kb on - strandat 321.329 kb on - strandat 321.329 kb on - strandat 321.340 kb on + strandat 321.340 kb on + strandat 321.340 kb on + strandat 321.340 kb on + strandat 321.340 kb on + strandat 321.340 kb on + strandat 321.340 kb on + strandat 321.341 kb on - strandat 321.341 kb on - strandat 321.341 kb on - strandat 321.373 kb on + strand, within PfGW456L13_274at 321.374 kb on - strand, within PfGW456L13_274at 321.374 kb on - strand, within PfGW456L13_274at 321.451 kb on + strand, within PfGW456L13_274at 321.451 kb on + strand, within PfGW456L13_274at 321.451 kb on + strand, within PfGW456L13_274at 321.451 kb on + strand, within PfGW456L13_274at 321.451 kb on + strand, within PfGW456L13_274at 321.451 kb on + strand, within PfGW456L13_274at 321.451 kb on + strand, within PfGW456L13_274at 321.451 kb on + strand, within PfGW456L13_274at 321.451 kb on + strand, within PfGW456L13_274at 321.451 kb on + strand, within PfGW456L13_274at 321.451 kb on + strand, within PfGW456L13_274at 321.451 kb on + strand, within PfGW456L13_274at 321.452 kb on - strand, within PfGW456L13_274at 321.452 kb on - strand, within PfGW456L13_274at 321.452 kb on - strand, within PfGW456L13_274at 321.452 kb on - strand, within PfGW456L13_274at 321.452 kb on - strand, within PfGW456L13_274at 321.452 kb on - strand, within PfGW456L13_274at 321.475 kb on + strand, within PfGW456L13_274at 321.475 kb on + strand, within PfGW456L13_274at 321.475 kb on + strand, within PfGW456L13_274at 321.476 kb on - strand, within PfGW456L13_274at 321.476 kb on - strand, within PfGW456L13_274at 321.595 kb on - strand, within PfGW456L13_274at 321.978 kb on + strand, within PfGW456L13_274at 322.028 kb on + strand, within PfGW456L13_274at 322.028 kb on + strand, within PfGW456L13_274at 322.028 kb on + strand, within PfGW456L13_274at 322.028 kb on + strand, within PfGW456L13_274at 322.146 kb on - strand, within PfGW456L13_274

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrate (N)
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319,872 + PfGW456L13_272 0.78 -4.1
319,872 + PfGW456L13_272 0.78 -3.9
319,872 + PfGW456L13_272 0.78 -3.8
319,872 + PfGW456L13_272 0.78 -5.4
319,873 - PfGW456L13_272 0.78 -2.6
319,873 - PfGW456L13_272 0.78 -2.9
319,878 + PfGW456L13_272 0.78 -4.9
319,878 + PfGW456L13_272 0.78 -3.6
319,878 + PfGW456L13_272 0.78 -4.2
319,878 + PfGW456L13_272 0.78 -1.9
319,879 - PfGW456L13_272 0.78 -3.9
319,879 - PfGW456L13_272 0.78 -2.3
319,879 - PfGW456L13_272 0.78 -3.4
319,879 - PfGW456L13_272 0.78 -2.3
320,116 + PfGW456L13_272 0.83 -3.0
320,116 + PfGW456L13_272 0.83 -2.0
320,116 + PfGW456L13_272 0.83 -4.5
320,117 - PfGW456L13_272 0.83 -2.7
320,117 - PfGW456L13_272 0.83 -4.0
320,117 - PfGW456L13_272 0.83 -3.2
320,247 + PfGW456L13_272 0.86 -3.7
320,248 - PfGW456L13_272 0.86 -3.7
320,287 - PfGW456L13_272 0.87 -2.4
320,319 + PfGW456L13_272 0.88 -2.6
320,319 + PfGW456L13_272 0.88 -4.3
320,319 + PfGW456L13_272 0.88 -3.4
320,319 + PfGW456L13_272 0.88 -4.1
320,319 + PfGW456L13_272 0.88 -3.6
320,319 + PfGW456L13_272 0.88 -3.0
320,319 + PfGW456L13_272 0.88 -5.0
320,319 + PfGW456L13_272 0.88 -2.7
320,319 + PfGW456L13_272 0.88 -2.9
320,320 - PfGW456L13_272 0.88 -4.0
320,320 - PfGW456L13_272 0.88 -3.0
320,320 - PfGW456L13_272 0.88 -3.2
320,320 - PfGW456L13_272 0.88 -4.9
320,320 - PfGW456L13_272 0.88 -4.7
320,320 - PfGW456L13_272 0.88 -2.5
320,320 - PfGW456L13_272 0.88 -4.6
320,320 - PfGW456L13_272 0.88 -3.9
320,320 - PfGW456L13_272 0.88 -3.4
320,320 - PfGW456L13_272 0.88 -2.9
320,598 + -3.5
320,598 + -3.8
320,598 + -2.9
320,599 - -4.9
320,599 - -2.7
320,599 - -4.5
320,708 - -3.0
320,764 + -3.2
320,765 - -3.3
320,786 - -4.2
320,786 - -4.7
320,812 + -3.5
320,812 + -3.4
320,812 + -1.6
320,813 - -4.5
320,813 - -3.0
320,813 - -4.2
320,813 - -4.0
320,813 - -3.7
320,836 - -3.2
320,929 - PfGW456L13_273 0.27 -0.6
320,964 + PfGW456L13_273 0.37 -2.9
320,964 + PfGW456L13_273 0.37 -0.4
320,964 + PfGW456L13_273 0.37 -4.0
320,964 + PfGW456L13_273 0.37 -2.6
320,964 + PfGW456L13_273 0.37 -2.7
320,965 - PfGW456L13_273 0.38 +0.2
320,965 - PfGW456L13_273 0.38 -0.4
320,965 - PfGW456L13_273 0.38 -0.5
320,965 - PfGW456L13_273 0.38 +2.0
321,097 + PfGW456L13_273 0.75 -0.0
321,097 + +1.2
321,097 + PfGW456L13_273 0.75 -1.4
321,257 + -1.0
321,258 - -1.9
321,329 - +0.4
321,329 - +1.1
321,340 + +0.8
321,340 + -1.3
321,340 + -0.4
321,340 + +0.7
321,340 + -1.3
321,340 + -0.1
321,340 + +0.6
321,341 - -0.5
321,341 - -1.0
321,341 - -0.2
321,373 + PfGW456L13_274 0.11 +0.0
321,374 - PfGW456L13_274 0.11 +0.3
321,374 - PfGW456L13_274 0.11 -1.3
321,451 + PfGW456L13_274 0.16 +1.3
321,451 + PfGW456L13_274 0.16 -0.2
321,451 + PfGW456L13_274 0.16 -0.6
321,451 + PfGW456L13_274 0.16 -2.3
321,451 + PfGW456L13_274 0.16 +0.5
321,451 + PfGW456L13_274 0.16 -0.3
321,451 + PfGW456L13_274 0.16 -0.6
321,451 + PfGW456L13_274 0.16 -0.1
321,451 + PfGW456L13_274 0.16 -0.8
321,451 + PfGW456L13_274 0.16 -0.4
321,451 + PfGW456L13_274 0.16 -2.3
321,451 + PfGW456L13_274 0.16 -0.3
321,452 - PfGW456L13_274 0.16 +0.0
321,452 - PfGW456L13_274 0.16 -0.2
321,452 - PfGW456L13_274 0.16 +0.6
321,452 - PfGW456L13_274 0.16 -0.9
321,452 - PfGW456L13_274 0.16 +2.1
321,452 - PfGW456L13_274 0.16 -1.4
321,475 + PfGW456L13_274 0.17 -0.4
321,475 + PfGW456L13_274 0.17 -0.9
321,475 + PfGW456L13_274 0.17 -0.4
321,476 - PfGW456L13_274 0.17 +0.2
321,476 - PfGW456L13_274 0.17 +1.0
321,595 - PfGW456L13_274 0.25 +1.4
321,978 + PfGW456L13_274 0.49 -0.1
322,028 + PfGW456L13_274 0.52 +0.7
322,028 + PfGW456L13_274 0.52 -0.2
322,028 + PfGW456L13_274 0.52 -0.5
322,028 + PfGW456L13_274 0.52 +0.5
322,146 - PfGW456L13_274 0.59 -0.1

Or see this region's nucleotide sequence