Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS20760

Experiment: no extra (N); with MOPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	no extra (N); with MOPS
4,669,681	+		PFLU_RS20750	0.24	+1.0
4,669,681	+		PFLU_RS20750	0.24	+0.0
4,669,681	+		PFLU_RS20750	0.24	-0.7
4,669,681	+		PFLU_RS20750	0.24	-1.3
4,669,681	+		PFLU_RS20750	0.24	+1.6
4,669,681	+		PFLU_RS20750	0.24	-1.0
4,669,681	+		PFLU_RS20750	0.24	+0.7
4,669,681	+		PFLU_RS20750	0.24	+0.2
4,669,682	-		PFLU_RS20750	0.24	-2.1
4,669,682	-		PFLU_RS20750	0.24	-1.0
4,669,682	-		PFLU_RS20750	0.24	-1.0
4,669,682	-		PFLU_RS20750	0.24	+0.3
4,669,682	-		PFLU_RS20750	0.24	-1.4
4,669,682	-		PFLU_RS20750	0.24	-0.4
4,669,682	-		PFLU_RS20750	0.24	-0.4
4,669,682	-		PFLU_RS20750	0.24	-0.1
4,669,682	-		PFLU_RS20750	0.24	+0.4
4,669,719	-		PFLU_RS20750	0.31	+0.5
4,669,719	-		PFLU_RS20750	0.31	-0.7
4,669,732	+		PFLU_RS20750	0.33	-0.0
4,669,733	-		PFLU_RS20750	0.34	+1.2
4,669,894	+		PFLU_RS20750	0.62	-1.0
4,669,895	-		PFLU_RS20750	0.62	-0.1
4,669,895	-		PFLU_RS20750	0.62	-0.1
4,669,895	-		PFLU_RS20750	0.62	+0.4
4,669,915	+		PFLU_RS20750	0.66	+0.3
4,669,915	+		PFLU_RS20750	0.66	+0.5
4,669,927	+		PFLU_RS20750	0.68	-0.2
4,669,927	+		PFLU_RS20750	0.68	-0.8
4,669,927	+		PFLU_RS20750	0.68	+0.6
4,669,928	-		PFLU_RS20750	0.68	-0.3
4,669,928	-		PFLU_RS20750	0.68	-1.8
4,669,928	-		PFLU_RS20750	0.68	+0.6
4,670,125	-				+1.2
4,670,332	+		PFLU_RS20755	0.18	+1.0
4,670,332	+		PFLU_RS20755	0.18	+0.0
4,670,333	-		PFLU_RS20755	0.19	-0.7
4,670,333	-		PFLU_RS20755	0.19	+1.0
4,670,333	-		PFLU_RS20755	0.19	+0.4
4,670,341	+		PFLU_RS20755	0.22	+1.1
4,670,341	+		PFLU_RS20755	0.22	+0.1
4,670,341	+		PFLU_RS20755	0.22	-0.1
4,670,341	+		PFLU_RS20755	0.22	+0.1
4,670,341	+		PFLU_RS20755	0.22	-1.0
4,670,341	+		PFLU_RS20755	0.22	+0.4
4,670,341	+		PFLU_RS20755	0.22	+0.0
4,670,341	+		PFLU_RS20755	0.22	+0.4
4,670,341	+		PFLU_RS20755	0.22	-2.7
4,670,341	+		PFLU_RS20755	0.22	+0.5
4,670,341	+		PFLU_RS20755	0.22	-0.7
4,670,342	-		PFLU_RS20755	0.23	-0.7
4,670,342	-		PFLU_RS20755	0.23	+0.8
4,670,342	-		PFLU_RS20755	0.23	-0.1
4,670,342	-		PFLU_RS20755	0.23	-0.4
4,670,342	-		PFLU_RS20755	0.23	-0.2
4,670,342	-		PFLU_RS20755	0.23	+1.0
4,670,342	-		PFLU_RS20755	0.23	-0.2
4,670,342	-		PFLU_RS20755	0.23	-0.5
4,670,342	-		PFLU_RS20755	0.23	+0.0
4,670,342	-		PFLU_RS20755	0.23	-0.5
4,670,342	-		PFLU_RS20755	0.23	-0.4
4,670,342	-		PFLU_RS20755	0.23	-1.7
4,670,342	-		PFLU_RS20755	0.23	+1.3
4,670,342	-		PFLU_RS20755	0.23	+0.6
4,670,342	-		PFLU_RS20755	0.23	-1.6
4,670,342	-		PFLU_RS20755	0.23	-1.6
4,670,530	-				-0.5
4,670,530	-				+1.3
4,670,534	+				+1.5
4,670,534	+				-2.2
4,670,534	+				+1.0
4,670,534	+				+1.6
4,670,534	+				-1.0
4,670,584	+				+1.0
4,670,584	+				-1.1
4,670,685	+				+2.0
4,670,686	-				+1.6
4,670,687	+				-2.5
4,670,687	+				-0.4
4,670,687	+				-0.4
4,670,687	+				+1.2
4,670,687	+				+0.5
4,670,688	-				-0.4
4,670,688	-				-0.6
4,670,688	-				-0.2
4,670,688	-				+0.6
4,670,688	-				-1.2
4,670,688	-				+0.9
4,670,688	-				-0.9
4,670,688	-				-1.0
4,670,688	-				+1.4
4,670,688	-				-2.0
4,670,688	-				-0.5
4,670,688	-				+0.2
4,670,688	-				-0.3
4,670,688	-				-1.4
4,670,688	-				-0.2
4,670,688	-				-1.7
4,670,688	-				-1.2
4,670,688	-				+0.6
4,670,759	+		PFLU_RS20760	0.14	-1.1
4,670,985	+		PFLU_RS20760	0.38	+0.9
4,670,985	+		PFLU_RS20760	0.38	+0.0
4,670,985	+		PFLU_RS20760	0.38	-1.6
4,670,985	+		PFLU_RS20760	0.38	-0.6
4,670,985	+		PFLU_RS20760	0.38	-0.5
4,670,985	+		PFLU_RS20760	0.38	+1.0
4,670,986	-		PFLU_RS20760	0.38	+0.1
4,670,986	-		PFLU_RS20760	0.38	-0.6
4,670,986	-		PFLU_RS20760	0.38	-0.7
4,670,986	-		PFLU_RS20760	0.38	+1.1
4,670,986	-		PFLU_RS20760	0.38	-0.1
4,670,986	-		PFLU_RS20760	0.38	+1.6
4,670,986	-		PFLU_RS20760	0.38	+0.6
4,670,986	-		PFLU_RS20760	0.38	-0.4
4,670,987	+		PFLU_RS20760	0.38	-0.1
4,670,987	+		PFLU_RS20760	0.38	+0.6
4,670,987	+		PFLU_RS20760	0.38	-0.6
4,670,987	+		PFLU_RS20760	0.38	+0.3
4,670,987	+		PFLU_RS20760	0.38	+1.6
4,670,987	+		PFLU_RS20760	0.38	+0.5
4,670,988	-		PFLU_RS20760	0.38	-0.2
4,670,988	-		PFLU_RS20760	0.38	+1.6
4,671,164	+		PFLU_RS20760	0.57	+0.3
4,671,164	+		PFLU_RS20760	0.57	-0.2
4,671,165	-		PFLU_RS20760	0.57	+0.6
4,671,165	-		PFLU_RS20760	0.57	+0.4
4,671,326	+		PFLU_RS20760	0.74	+0.3
4,671,327	-		PFLU_RS20760	0.74	+0.6
4,671,327	-		PFLU_RS20760	0.74	-1.7
4,671,327	-		PFLU_RS20760	0.74	+0.7
4,671,327	-		PFLU_RS20760	0.74	-1.4
4,671,327	-		PFLU_RS20760	0.74	+1.8
4,671,327	-		PFLU_RS20760	0.74	+0.0
4,671,327	-		PFLU_RS20760	0.74	+1.4
4,671,420	-		PFLU_RS20760	0.84	-0.5
4,671,607	+				-2.6
4,671,607	+				-0.8
4,671,607	+				+0.8
4,671,607	+				-1.3
4,671,607	+				-1.3
4,671,607	+				+0.4
4,671,607	+				+0.2
4,671,608	-				-0.6
4,671,608	-				+0.6
4,671,608	-				+0.0
4,671,608	-				-1.6
4,671,608	-				+0.6
4,671,661	+				+0.6
4,671,662	-				+1.2
4,672,008	-		PFLU_RS20765	0.72	+0.9
4,672,008	-		PFLU_RS20765	0.72	-0.2
4,672,008	-		PFLU_RS20765	0.72	-1.7
4,672,008	-		PFLU_RS20765	0.72	-1.1
4,672,101	+				-0.1
4,672,101	+				+0.3
4,672,102	-				+0.2
4,672,102	-				-1.6
4,672,120	+				-0.8
4,672,152	+				+0.8
4,672,152	+				+0.0
4,672,184	+		PFLU_RS20770	0.12	-0.0
4,672,184	+		PFLU_RS20770	0.12	+1.6
4,672,185	-		PFLU_RS20770	0.12	+0.8
4,672,185	-		PFLU_RS20770	0.12	+1.3
4,672,304	+		PFLU_RS20770	0.40	-0.6
4,672,304	+		PFLU_RS20770	0.40	+1.2
4,672,304	+		PFLU_RS20770	0.40	+2.1
4,672,305	-		PFLU_RS20770	0.40	-0.3
4,672,305	-		PFLU_RS20770	0.40	-0.5
4,672,518	+				-0.1
4,672,518	+				+0.2
4,672,519	-				-0.8
4,672,519	-				-0.8
4,672,519	-				+0.6
4,672,519	-				+0.3
4,672,519	-				+0.9