Experiment: Lomefloxacin 0.001 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_04315 and AO353_04320 are separated by 380 nucleotides AO353_04320 and AO353_04325 are separated by 66 nucleotides AO353_04325 and AO353_04330 are separated by 149 nucleotides
AO353_04315: AO353_04315 - oxidoreductase, at 929,638 to 930,744
_04315
AO353_04320: AO353_04320 - single-stranded-DNA-specific exonuclease RecJ, at 931,125 to 932,834
_04320
AO353_04325: AO353_04325 - hypothetical protein, at 932,901 to 933,443
_04325
AO353_04330: AO353_04330 - CoA-transferase, at 933,593 to 934,792
_04330
Position (kb) 931
932
933 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 930.200 kb on + strand, within AO353_04315 at 930.201 kb on - strand, within AO353_04315 at 930.480 kb on + strand, within AO353_04315 at 930.481 kb on - strand, within AO353_04315 at 930.582 kb on + strand, within AO353_04315 at 930.582 kb on + strand, within AO353_04315 at 930.583 kb on - strand, within AO353_04315 at 930.586 kb on + strand, within AO353_04315 at 930.586 kb on + strand, within AO353_04315 at 930.586 kb on + strand, within AO353_04315 at 930.586 kb on + strand, within AO353_04315 at 930.587 kb on - strand, within AO353_04315 at 930.587 kb on - strand, within AO353_04315 at 930.587 kb on - strand, within AO353_04315 at 930.587 kb on - strand, within AO353_04315 at 930.665 kb on + strand at 930.665 kb on + strand at 930.665 kb on + strand at 930.666 kb on - strand at 930.666 kb on - strand at 930.720 kb on + strand at 930.721 kb on - strand at 930.721 kb on - strand at 930.721 kb on - strand at 930.721 kb on - strand at 930.721 kb on - strand at 930.722 kb on + strand at 930.722 kb on + strand at 930.722 kb on + strand at 930.723 kb on - strand at 930.723 kb on - strand at 930.723 kb on - strand at 930.723 kb on - strand at 930.723 kb on - strand at 930.723 kb on - strand at 930.723 kb on - strand at 930.723 kb on - strand at 930.791 kb on + strand at 930.792 kb on - strand at 930.879 kb on - strand at 930.879 kb on - strand at 930.879 kb on - strand at 930.886 kb on - strand at 930.886 kb on - strand at 930.934 kb on + strand at 930.934 kb on + strand at 930.934 kb on + strand at 930.934 kb on + strand at 930.934 kb on + strand at 930.935 kb on - strand at 930.935 kb on - strand at 930.935 kb on - strand at 930.935 kb on - strand at 930.935 kb on - strand at 930.937 kb on + strand at 930.937 kb on + strand at 930.937 kb on + strand at 930.937 kb on + strand at 930.937 kb on + strand at 930.938 kb on - strand at 930.938 kb on - strand at 931.010 kb on + strand at 931.010 kb on + strand at 931.049 kb on - strand at 931.049 kb on - strand at 931.152 kb on + strand at 931.153 kb on - strand at 931.153 kb on - strand at 931.198 kb on + strand at 931.198 kb on + strand at 931.198 kb on + strand at 931.198 kb on + strand at 931.198 kb on + strand at 931.199 kb on - strand at 931.302 kb on + strand, within AO353_04320 at 931.303 kb on - strand, within AO353_04320 at 931.303 kb on - strand, within AO353_04320 at 931.303 kb on - strand, within AO353_04320 at 931.303 kb on - strand, within AO353_04320 at 931.582 kb on + strand, within AO353_04320 at 931.582 kb on + strand, within AO353_04320 at 931.582 kb on + strand, within AO353_04320 at 931.582 kb on + strand, within AO353_04320 at 931.583 kb on - strand, within AO353_04320 at 931.583 kb on - strand, within AO353_04320 at 931.583 kb on - strand, within AO353_04320 at 931.703 kb on + strand, within AO353_04320 at 931.704 kb on - strand, within AO353_04320 at 931.704 kb on - strand, within AO353_04320 at 931.704 kb on - strand, within AO353_04320 at 931.717 kb on + strand, within AO353_04320 at 931.718 kb on - strand, within AO353_04320 at 932.021 kb on + strand, within AO353_04320 at 932.258 kb on - strand, within AO353_04320 at 932.258 kb on - strand, within AO353_04320 at 932.510 kb on - strand, within AO353_04320 at 932.533 kb on + strand, within AO353_04320 at 932.534 kb on - strand, within AO353_04320 at 932.534 kb on - strand, within AO353_04320 at 932.758 kb on + strand at 932.758 kb on + strand at 932.758 kb on + strand at 932.760 kb on + strand at 932.783 kb on + strand at 932.783 kb on + strand at 932.784 kb on - strand at 932.784 kb on - strand at 932.784 kb on - strand at 932.784 kb on - strand at 932.814 kb on + strand at 932.814 kb on + strand at 932.815 kb on - strand at 932.815 kb on - strand at 932.815 kb on - strand at 932.815 kb on - strand at 932.859 kb on + strand at 932.859 kb on + strand at 932.859 kb on + strand at 932.859 kb on + strand at 932.859 kb on + strand at 932.859 kb on + strand at 932.859 kb on + strand at 932.859 kb on + strand at 932.859 kb on + strand at 932.859 kb on + strand at 932.859 kb on + strand at 932.859 kb on + strand at 932.859 kb on + strand at 932.859 kb on + strand at 932.859 kb on + strand at 932.860 kb on - strand at 932.860 kb on - strand at 932.860 kb on - strand at 932.860 kb on - strand at 932.860 kb on - strand at 932.860 kb on - strand at 932.860 kb on - strand at 932.860 kb on - strand at 932.860 kb on - strand at 932.860 kb on - strand at 932.863 kb on + strand at 932.863 kb on + strand at 932.863 kb on + strand at 932.863 kb on + strand at 932.863 kb on + strand at 932.863 kb on + strand at 932.864 kb on - strand at 932.864 kb on - strand at 932.864 kb on - strand at 932.864 kb on - strand at 932.864 kb on - strand at 932.868 kb on + strand at 932.868 kb on + strand at 932.869 kb on - strand at 932.869 kb on - strand at 933.003 kb on - strand, within AO353_04325 at 933.292 kb on + strand, within AO353_04325 at 933.293 kb on - strand, within AO353_04325 at 933.305 kb on - strand, within AO353_04325 at 933.380 kb on - strand, within AO353_04325 at 933.421 kb on + strand at 933.421 kb on + strand at 933.421 kb on + strand at 933.421 kb on + strand at 933.421 kb on + strand at 933.421 kb on + strand at 933.421 kb on + strand at 933.421 kb on + strand at 933.421 kb on + strand at 933.421 kb on + strand at 933.422 kb on - strand at 933.422 kb on - strand at 933.422 kb on - strand at 933.459 kb on + strand at 933.460 kb on - strand at 933.546 kb on - strand at 933.550 kb on + strand at 933.550 kb on + strand at 933.550 kb on + strand at 933.551 kb on - strand at 933.560 kb on + strand at 933.560 kb on + strand at 933.560 kb on + strand at 933.561 kb on - strand at 933.580 kb on + strand at 933.581 kb on - strand at 933.673 kb on + strand at 933.673 kb on + strand at 933.673 kb on + strand at 933.674 kb on - strand at 933.674 kb on - strand at 933.674 kb on - strand at 933.674 kb on - strand at 933.674 kb on - strand at 933.755 kb on + strand, within AO353_04330 at 933.755 kb on + strand, within AO353_04330 at 933.756 kb on - strand, within AO353_04330 at 933.756 kb on - strand, within AO353_04330 at 933.756 kb on - strand, within AO353_04330 at 933.814 kb on - strand, within AO353_04330
Per-strain Table
Position Strand Gene LocusTag Fraction Lomefloxacin 0.001 mM remove 930,200 + AO353_04315 0.51 -0.7 930,201 - AO353_04315 0.51 +0.2 930,480 + AO353_04315 0.76 -0.4 930,481 - AO353_04315 0.76 +0.3 930,582 + AO353_04315 0.85 -0.0 930,582 + AO353_04315 0.85 +0.6 930,583 - AO353_04315 0.85 +1.4 930,586 + AO353_04315 0.86 +0.7 930,586 + AO353_04315 0.86 -1.1 930,586 + AO353_04315 0.86 -2.2 930,586 + AO353_04315 0.86 +1.0 930,587 - AO353_04315 0.86 -1.6 930,587 - AO353_04315 0.86 +2.1 930,587 - AO353_04315 0.86 +1.0 930,587 - AO353_04315 0.86 -1.6 930,665 + +0.4 930,665 + +1.8 930,665 + +1.9 930,666 - -0.5 930,666 - -1.1 930,720 + -1.3 930,721 - +0.2 930,721 - +0.8 930,721 - +0.4 930,721 - -0.6 930,721 - -0.5 930,722 + +2.4 930,722 + -0.5 930,722 + -1.0 930,723 - +0.4 930,723 - +0.8 930,723 - +2.1 930,723 - +1.6 930,723 - -1.2 930,723 - -2.4 930,723 - +0.0 930,723 - +0.4 930,791 + +0.0 930,792 - -1.2 930,879 - +2.1 930,879 - -2.5 930,879 - +0.5 930,886 - -0.6 930,886 - +0.0 930,934 + +0.4 930,934 + -1.6 930,934 + +0.1 930,934 + +1.1 930,934 + +0.6 930,935 - -0.6 930,935 - +0.0 930,935 - -0.3 930,935 - +0.0 930,935 - +0.0 930,937 + -1.2 930,937 + -0.2 930,937 + -0.2 930,937 + +0.4 930,937 + -1.5 930,938 - -0.5 930,938 - -0.6 931,010 + +1.5 931,010 + +1.4 931,049 - -0.9 931,049 - -1.6 931,152 + -2.5 931,153 - -1.2 931,153 - -1.0 931,198 + -0.5 931,198 + -2.3 931,198 + -3.4 931,198 + +1.0 931,198 + -1.0 931,199 - -1.1 931,302 + AO353_04320 0.10 +0.5 931,303 - AO353_04320 0.10 -1.5 931,303 - AO353_04320 0.10 -1.5 931,303 - AO353_04320 0.10 +0.4 931,303 - AO353_04320 0.10 -2.5 931,582 + AO353_04320 0.27 -0.6 931,582 + AO353_04320 0.27 -1.5 931,582 + AO353_04320 0.27 +1.0 931,582 + AO353_04320 0.27 +0.0 931,583 - AO353_04320 0.27 +0.0 931,583 - AO353_04320 0.27 +0.2 931,583 - AO353_04320 0.27 -1.7 931,703 + AO353_04320 0.34 +0.4 931,704 - AO353_04320 0.34 -1.0 931,704 - AO353_04320 0.34 +0.0 931,704 - AO353_04320 0.34 -1.0 931,717 + AO353_04320 0.35 -0.5 931,718 - AO353_04320 0.35 -2.9 932,021 + AO353_04320 0.52 -0.6 932,258 - AO353_04320 0.66 -1.3 932,258 - AO353_04320 0.66 +0.0 932,510 - AO353_04320 0.81 -1.6 932,533 + AO353_04320 0.82 -1.0 932,534 - AO353_04320 0.82 -0.2 932,534 - AO353_04320 0.82 +0.9 932,758 + -1.9 932,758 + -0.2 932,758 + -0.6 932,760 + +0.0 932,783 + -0.6 932,783 + -2.4 932,784 - -0.2 932,784 - -1.9 932,784 - +1.6 932,784 - +0.0 932,814 + +0.3 932,814 + -0.6 932,815 - -0.4 932,815 - +0.4 932,815 - -1.3 932,815 - +0.4 932,859 + -1.9 932,859 + +0.3 932,859 + +2.4 932,859 + -2.3 932,859 + +0.2 932,859 + -0.4 932,859 + +2.4 932,859 + +0.0 932,859 + +0.0 932,859 + +0.0 932,859 + -0.7 932,859 + +0.2 932,859 + -1.2 932,859 + +0.4 932,859 + +0.2 932,860 - -1.7 932,860 - +0.1 932,860 - -1.0 932,860 - -1.1 932,860 - -2.0 932,860 - -1.2 932,860 - -1.6 932,860 - -1.0 932,860 - -0.0 932,860 - -2.2 932,863 + +1.0 932,863 + -1.2 932,863 + -1.1 932,863 + +0.2 932,863 + -2.1 932,863 + -3.1 932,864 - -1.2 932,864 - +0.5 932,864 - -0.4 932,864 - -1.1 932,864 - +0.0 932,868 + -0.2 932,868 + -0.4 932,869 - +2.2 932,869 - +0.8 933,003 - AO353_04325 0.19 -0.8 933,292 + AO353_04325 0.72 -1.4 933,293 - AO353_04325 0.72 +0.0 933,305 - AO353_04325 0.74 -1.1 933,380 - AO353_04325 0.88 +0.8 933,421 + -0.2 933,421 + -1.0 933,421 + -1.1 933,421 + -1.8 933,421 + -0.4 933,421 + -0.2 933,421 + -0.8 933,421 + +2.5 933,421 + -0.4 933,421 + -1.6 933,422 - +1.1 933,422 - -1.0 933,422 - -0.9 933,459 + -1.7 933,460 - -0.8 933,546 - +0.2 933,550 + -0.2 933,550 + +0.0 933,550 + -1.8 933,551 - +0.0 933,560 + -0.3 933,560 + -1.0 933,560 + -0.6 933,561 - +0.7 933,580 + +0.2 933,581 - -1.9 933,673 + +0.1 933,673 + -0.8 933,673 + -1.1 933,674 - +1.0 933,674 - +2.2 933,674 - +0.6 933,674 - +0.7 933,674 - -0.8 933,755 + AO353_04330 0.14 -1.0 933,755 + AO353_04330 0.14 -0.6 933,756 - AO353_04330 0.14 -1.6 933,756 - AO353_04330 0.14 -0.8 933,756 - AO353_04330 0.14 -0.6 933,814 - AO353_04330 0.18 +0.6
Or see this region's nucleotide sequence