Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF740

Experiment: LB_plus_SM_buffer with 6C2_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF739 and GFF740 are separated by 5 nucleotidesGFF740 and GFF741 are separated by 264 nucleotides GFF739 - Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1), at 97,594 to 99,081 GFF739 GFF740 - Putative LysR family transcriptional regulator, at 99,087 to 99,977 GFF740 GFF741 - D-beta-hydroxybutyrate permease, at 100,242 to 100,667 GFF741 Position (kb) 99 100Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 98.291 kb on - strand, within GFF739at 98.310 kb on + strand, within GFF739at 98.524 kb on + strand, within GFF739at 99.079 kb on + strandat 99.407 kb on - strand, within GFF740at 99.677 kb on + strand, within GFF740at 99.779 kb on + strand, within GFF740at 99.821 kb on + strand, within GFF740at 99.965 kb on + strandat 100.177 kb on + strandat 100.177 kb on + strandat 100.178 kb on - strandat 100.178 kb on - strandat 100.178 kb on - strandat 100.295 kb on + strand, within GFF741at 100.296 kb on - strand, within GFF741at 100.377 kb on + strand, within GFF741at 100.480 kb on - strand, within GFF741at 100.538 kb on + strand, within GFF741at 100.542 kb on + strand, within GFF741at 100.678 kb on - strandat 100.801 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6C2_phage 15 MOI
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98,291 - GFF739 0.47 -0.5
98,310 + GFF739 0.48 -0.4
98,524 + GFF739 0.62 -3.3
99,079 + +0.6
99,407 - GFF740 0.36 -1.3
99,677 + GFF740 0.66 -0.7
99,779 + GFF740 0.78 -0.2
99,821 + GFF740 0.82 +1.8
99,965 + -0.9
100,177 + +1.0
100,177 + +0.1
100,178 - +0.1
100,178 - -0.2
100,178 - -1.0
100,295 + GFF741 0.12 -2.0
100,296 - GFF741 0.13 +0.0
100,377 + GFF741 0.32 -2.3
100,480 - GFF741 0.56 -0.8
100,538 + GFF741 0.69 -0.2
100,542 + GFF741 0.70 +1.6
100,678 - -0.6
100,801 - -0.8

Or see this region's nucleotide sequence