Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4128

Experiment: LB_plus_SM_buffer with 6C2_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4127 and GFF4128 are separated by 259 nucleotidesGFF4128 and GFF4129 are separated by 165 nucleotides GFF4127 - putative inner membrane protein, at 6,253 to 7,575 GFF4127 GFF4128 - hypothetical protein, at 7,835 to 9,709 GFF4128 GFF4129 - FIG01046935: hypothetical protein, at 9,875 to 10,750 GFF4129 Position (kb) 7 8 9 10Strain fitness (log2 ratio) -2 -1 0 1at 8.249 kb on - strand, within GFF4128at 8.332 kb on + strand, within GFF4128at 8.579 kb on + strand, within GFF4128at 9.906 kb on + strandat 10.018 kb on - strand, within GFF4129at 10.039 kb on - strand, within GFF4129at 10.081 kb on - strand, within GFF4129at 10.081 kb on - strand, within GFF4129at 10.363 kb on + strand, within GFF4129at 10.466 kb on + strand, within GFF4129at 10.538 kb on + strand, within GFF4129at 10.538 kb on + strand, within GFF4129at 10.579 kb on + strand, within GFF4129at 10.579 kb on + strand, within GFF4129at 10.581 kb on + strand, within GFF4129at 10.581 kb on + strand, within GFF4129

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6C2_phage 15 MOI
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8,249 - GFF4128 0.22 -0.0
8,332 + GFF4128 0.27 -0.9
8,579 + GFF4128 0.40 -0.9
9,906 + -0.7
10,018 - GFF4129 0.16 +0.5
10,039 - GFF4129 0.19 -0.0
10,081 - GFF4129 0.24 -0.5
10,081 - GFF4129 0.24 +0.3
10,363 + GFF4129 0.56 -0.3
10,466 + GFF4129 0.67 -0.5
10,538 + GFF4129 0.76 -2.5
10,538 + GFF4129 0.76 +0.1
10,579 + GFF4129 0.80 -0.0
10,579 + GFF4129 0.80 +0.4
10,581 + GFF4129 0.81 +0.2
10,581 + GFF4129 0.81 -0.5

Or see this region's nucleotide sequence