Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4096

Experiment: LB_plus_SM_buffer with 6C2_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4095 and GFF4096 are separated by 168 nucleotidesGFF4096 and GFF4097 overlap by 4 nucleotides GFF4095 - LysR-family transcriptional regulator SinR, at 54,020 to 54,967 GFF4095 GFF4096 - FIG01047254: hypothetical protein, at 55,136 to 55,306 GFF4096 GFF4097 - Peptide transport periplasmic protein sapA (TC 3.A.1.5.5), at 55,303 to 56,022 GFF4097 Position (kb) 55 56Strain fitness (log2 ratio) -1 0 1at 54.233 kb on + strand, within GFF4095at 54.234 kb on - strand, within GFF4095at 55.243 kb on - strand, within GFF4096at 55.318 kb on - strandat 55.428 kb on - strand, within GFF4097at 55.462 kb on + strand, within GFF4097at 55.463 kb on - strand, within GFF4097at 55.533 kb on + strand, within GFF4097at 55.766 kb on - strand, within GFF4097at 55.866 kb on + strand, within GFF4097at 55.871 kb on - strand, within GFF4097at 55.871 kb on - strand, within GFF4097at 55.904 kb on + strand, within GFF4097at 55.941 kb on + strand, within GFF4097at 55.943 kb on + strand, within GFF4097at 55.944 kb on - strand, within GFF4097at 56.038 kb on - strandat 56.069 kb on + strandat 56.089 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6C2_phage 15 MOI
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54,233 + GFF4095 0.22 +0.6
54,234 - GFF4095 0.23 -0.1
55,243 - GFF4096 0.63 -0.8
55,318 - -1.5
55,428 - GFF4097 0.17 -0.3
55,462 + GFF4097 0.22 -0.3
55,463 - GFF4097 0.22 -0.8
55,533 + GFF4097 0.32 -0.7
55,766 - GFF4097 0.64 +0.3
55,866 + GFF4097 0.78 +0.1
55,871 - GFF4097 0.79 -1.1
55,871 - GFF4097 0.79 +0.2
55,904 + GFF4097 0.83 -0.2
55,941 + GFF4097 0.89 +0.0
55,943 + GFF4097 0.89 +0.2
55,944 - GFF4097 0.89 -0.7
56,038 - -0.1
56,069 + -0.6
56,089 - +0.7

Or see this region's nucleotide sequence