Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF3749

Experiment: LB_plus_SM_buffer with 6C2_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3747 and GFF3748 are separated by 31 nucleotidesGFF3748 and GFF3749 are separated by 179 nucleotidesGFF3749 and GFF3750 are separated by 84 nucleotidesGFF3750 and GFF3751 are separated by 108 nucleotides GFF3747 - FIG001881: hydrolase of alkaline phosphatase superfamily, at 14,171 to 15,931 GFF3747 GFF3748 - FIG002927: hypothetical protein, at 15,963 to 16,190 GFF3748 GFF3749 - Nucleoid-associated protein NdpA, at 16,370 to 17,377 GFF3749 GFF3750 - Putative inner membrane protein, at 17,462 to 18,025 GFF3750 GFF3751 - LSU ribosomal protein L25p, at 18,134 to 18,418 GFF3751 Position (kb) 16 17 18Strain fitness (log2 ratio) -2 -1 0 1at 16.074 kb on - strand, within GFF3748at 16.170 kb on - strandat 16.226 kb on - strandat 16.229 kb on - strandat 16.509 kb on - strand, within GFF3749at 16.677 kb on + strand, within GFF3749at 16.678 kb on - strand, within GFF3749at 16.775 kb on - strand, within GFF3749at 17.222 kb on + strand, within GFF3749at 17.384 kb on - strandat 17.541 kb on - strand, within GFF3750at 17.542 kb on + strand, within GFF3750at 17.547 kb on - strand, within GFF3750at 17.646 kb on + strand, within GFF3750at 17.651 kb on + strand, within GFF3750at 17.763 kb on + strand, within GFF3750at 17.763 kb on + strand, within GFF3750at 17.763 kb on + strand, within GFF3750at 17.833 kb on - strand, within GFF3750at 17.880 kb on + strand, within GFF3750at 17.886 kb on + strand, within GFF3750at 17.978 kb on - strandat 18.024 kb on - strandat 18.024 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6C2_phage 15 MOI
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16,074 - GFF3748 0.49 +0.0
16,170 - +1.2
16,226 - +1.3
16,229 - +0.1
16,509 - GFF3749 0.14 -2.0
16,677 + GFF3749 0.30 -0.2
16,678 - GFF3749 0.31 -0.4
16,775 - GFF3749 0.40 +0.9
17,222 + GFF3749 0.85 -0.9
17,384 - -0.4
17,541 - GFF3750 0.14 +0.0
17,542 + GFF3750 0.14 +0.0
17,547 - GFF3750 0.15 -0.2
17,646 + GFF3750 0.33 +0.1
17,651 + GFF3750 0.34 -0.1
17,763 + GFF3750 0.53 -0.3
17,763 + GFF3750 0.53 +0.7
17,763 + GFF3750 0.53 -0.1
17,833 - GFF3750 0.66 -0.5
17,880 + GFF3750 0.74 -0.2
17,886 + GFF3750 0.75 -0.4
17,978 - -0.3
18,024 - +0.9
18,024 - -0.9

Or see this region's nucleotide sequence