Experiment: LB_plus_SM_buffer with 6C2_phage 15 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF336 and GFF337 are separated by 54 nucleotides GFF337 and GFF338 are separated by 696 nucleotides GFF338 and GFF339 overlap by 8 nucleotides GFF339 and GFF340 are separated by 94 nucleotides
GFF336 - Nicotinamidase family protein YcaC, at 52,559 to 53,239
GFF336
GFF337 - hypothetical protein, at 53,294 to 53,419
GFF337
GFF338 - Putative sensory transducer, at 54,116 to 54,880
GFF338
GFF339 - YqeJ protein, at 54,873 to 55,355
GFF339
GFF340 - autotransporter, at 55,450 to 58,317
GFF340
Position (kb) 54
55 Strain fitness (log2 ratio) -2
-1
0
1 at 53.239 kb on + strand at 53.240 kb on - strand at 53.240 kb on - strand at 53.686 kb on + strand at 53.687 kb on - strand at 53.961 kb on + strand at 53.962 kb on - strand at 53.977 kb on - strand at 53.995 kb on + strand at 54.004 kb on + strand at 54.054 kb on - strand at 54.086 kb on + strand at 54.127 kb on - strand at 54.365 kb on - strand, within GFF338 at 54.502 kb on + strand, within GFF338 at 54.502 kb on + strand, within GFF338 at 54.527 kb on + strand, within GFF338 at 54.527 kb on + strand, within GFF338 at 54.528 kb on - strand, within GFF338 at 54.532 kb on - strand, within GFF338 at 54.583 kb on + strand, within GFF338 at 54.584 kb on - strand, within GFF338 at 54.585 kb on + strand, within GFF338 at 54.710 kb on - strand, within GFF338 at 55.138 kb on - strand, within GFF339 at 55.141 kb on + strand, within GFF339 at 55.141 kb on + strand, within GFF339 at 55.271 kb on + strand, within GFF339 at 55.272 kb on - strand, within GFF339 at 55.494 kb on - strand at 55.531 kb on + strand at 55.644 kb on + strand at 55.645 kb on - strand at 55.645 kb on - strand at 55.647 kb on + strand at 55.724 kb on + strand at 55.725 kb on - strand at 55.782 kb on + strand, within GFF340 at 55.783 kb on - strand, within GFF340 at 55.826 kb on - strand, within GFF340
Per-strain Table
Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6C2_phage 15 MOI remove 53,239 + +0.4 53,240 - -0.3 53,240 - +0.9 53,686 + +0.3 53,687 - -0.1 53,961 + +0.3 53,962 - -0.6 53,977 - -0.8 53,995 + -2.0 54,004 + -0.1 54,054 - +0.0 54,086 + -0.3 54,127 - +0.0 54,365 - GFF338 0.33 -0.7 54,502 + GFF338 0.50 -1.4 54,502 + GFF338 0.50 -0.8 54,527 + GFF338 0.54 -0.2 54,527 + GFF338 0.54 -1.1 54,528 - GFF338 0.54 -1.0 54,532 - GFF338 0.54 -0.0 54,583 + GFF338 0.61 -0.3 54,584 - GFF338 0.61 -0.7 54,585 + GFF338 0.61 -0.7 54,710 - GFF338 0.78 -0.5 55,138 - GFF339 0.55 -0.8 55,141 + GFF339 0.55 -0.7 55,141 + GFF339 0.55 -0.1 55,271 + GFF339 0.82 -0.2 55,272 - GFF339 0.83 -0.9 55,494 - -0.4 55,531 + +0.4 55,644 + -0.1 55,645 - +0.2 55,645 - -1.0 55,647 + -0.4 55,724 + -0.6 55,725 - -0.2 55,782 + GFF340 0.12 -0.3 55,783 - GFF340 0.12 -0.2 55,826 - GFF340 0.13 +0.2
Or see this region's nucleotide sequence